Wall clock time and date at job start Mon Mar 30 2020 09:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47615 * 2 1 4 4 N 1.46900 * 109.46919 * 120.00155 * 2 1 3 5 5 C 1.46903 * 111.00237 * 72.71402 * 4 2 1 6 6 C 1.50694 * 109.47214 * 66.04194 * 5 4 2 7 7 H 1.08003 * 120.00355 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00053 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46894 * 90.00212 * 10 8 6 12 12 H 1.48493 * 109.46813 * 210.00466 * 10 8 6 13 13 H 1.48500 * 109.46847 * 330.00252 * 10 8 6 14 14 C 1.46900 * 111.00098 * 308.75729 * 4 2 1 15 15 H 1.08999 * 109.46728 * 326.39682 * 14 4 2 16 16 C 1.53000 * 109.46926 * 86.39563 * 14 4 2 17 17 C 1.52997 * 109.47178 * 206.39679 * 14 4 2 18 18 C 1.53005 * 109.47276 * 65.03827 * 17 14 4 19 19 H 1.08993 * 109.46411 * 303.88420 * 18 17 14 20 20 C 1.53043 * 109.46258 * 183.90291 * 18 17 14 21 21 C 1.53118 * 109.27654 * 180.80712 * 20 18 17 22 22 C 1.53122 * 109.16084 * 57.65307 * 21 20 18 23 23 C 1.53033 * 109.28025 * 302.34802 * 22 21 20 24 24 N 1.46844 * 109.52437 * 59.17611 * 23 22 21 25 25 H 1.08998 * 109.47118 * 307.36270 * 1 2 3 26 26 H 1.08998 * 109.47103 * 67.35914 * 1 2 3 27 27 H 1.09004 * 109.47637 * 187.36015 * 1 2 3 28 28 H 1.09005 * 109.46898 * 239.99990 * 2 1 3 29 29 H 1.08999 * 109.47150 * 182.61078 * 3 2 1 30 30 H 1.08994 * 109.46589 * 302.61589 * 3 2 1 31 31 H 1.08997 * 109.46410 * 62.61106 * 3 2 1 32 32 H 1.09003 * 109.47318 * 186.04789 * 5 4 2 33 33 H 1.09007 * 109.46440 * 306.04450 * 5 4 2 34 34 H 0.96996 * 119.99969 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47277 * 299.99699 * 16 14 4 36 36 H 1.08999 * 109.47320 * 60.00481 * 16 14 4 37 37 H 1.09002 * 109.46753 * 180.02562 * 16 14 4 38 38 H 1.08995 * 109.47329 * 185.04080 * 17 14 4 39 39 H 1.09007 * 109.47232 * 305.04196 * 17 14 4 40 40 H 1.08995 * 109.50109 * 300.75123 * 20 18 17 41 41 H 1.08997 * 109.50146 * 60.86487 * 20 18 17 42 42 H 1.08995 * 109.51903 * 177.55967 * 21 20 18 43 43 H 1.09002 * 109.52478 * 297.68610 * 21 20 18 44 44 H 1.08996 * 109.50164 * 62.28606 * 22 21 20 45 45 H 1.08994 * 109.50350 * 182.40319 * 22 21 20 46 46 H 1.08998 * 109.46317 * 179.19873 * 23 22 21 47 47 H 1.09000 * 109.46192 * 299.17199 * 23 22 21 48 48 H 1.00906 * 110.99840 * 174.16356 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.8109 -2.1427 1.0922 6 6 2.6709 -2.6934 -0.0160 7 1 3.3091 -2.0324 -0.5836 8 6 2.6430 -4.0412 -0.3053 9 7 1.8655 -4.8461 0.3855 10 14 3.7096 -4.7240 -1.6785 11 1 5.0299 -5.1227 -1.1281 12 1 3.0453 -5.9087 -2.2787 13 1 3.9014 -3.6833 -2.7203 14 6 1.3856 -0.1577 2.4118 15 1 1.1996 0.9087 2.2843 16 6 0.0597 -0.8811 2.6555 17 6 2.3123 -0.3740 3.6098 18 6 3.5877 0.4505 3.4235 19 1 4.0574 0.1840 2.4768 20 6 4.5555 0.1594 4.5728 21 6 5.8216 1.0016 4.3930 22 6 5.4367 2.4827 4.3405 23 6 4.4434 2.7065 3.1981 24 7 3.2497 1.8795 3.4167 25 1 -0.3633 0.6236 0.8168 26 1 -0.3633 0.3956 -0.9484 27 1 -0.3634 -1.0192 0.1316 28 1 1.8933 -0.5139 -0.8900 29 1 3.1291 1.4427 -0.0468 30 1 1.6390 1.9696 -0.8656 31 1 1.7155 1.9425 0.9125 32 1 2.0824 -2.6195 2.0340 33 1 0.7623 -2.3435 0.8723 34 1 1.8457 -5.7943 0.1817 35 1 -0.6006 -0.7269 1.8021 36 1 0.2457 -1.9475 2.7831 37 1 -0.4110 -0.4839 3.5549 38 1 1.8062 -0.0591 4.5223 39 1 2.5703 -1.4305 3.6835 40 1 4.0813 0.4129 5.5209 41 1 4.8183 -0.8984 4.5681 42 1 6.4954 0.8298 5.2323 43 1 6.3176 0.7200 3.4641 44 1 4.9765 2.7728 5.2850 45 1 6.3292 3.0848 4.1699 46 1 4.1564 3.7575 3.1670 47 1 4.9090 2.4290 2.2524 48 1 2.5400 2.0799 2.7280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157085592.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:15:01 Heat of formation + Delta-G solvation = -24.961556 kcal Electronic energy + Delta-G solvation = -22791.538770 eV Core-core repulsion = 19879.992954 eV Total energy + Delta-G solvation = -2911.545816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65638 -39.04365 -34.95971 -34.59253 -32.87446 -32.15591 -31.01800 -28.76725 -27.75687 -27.01159 -24.73888 -24.07999 -22.86560 -21.96959 -20.46911 -19.56303 -18.35817 -17.53345 -16.96429 -16.53282 -16.00235 -15.49511 -15.28227 -15.21564 -14.83806 -14.50456 -14.26471 -14.05929 -13.97968 -13.79289 -13.55357 -13.19951 -13.11264 -12.79105 -12.65976 -12.63973 -12.59120 -12.33906 -12.21109 -12.04429 -11.84783 -11.77675 -11.61539 -11.49620 -11.21247 -11.14939 -10.97657 -10.74597 -10.55574 -9.24832 -8.75022 -8.16588 -6.24598 1.38278 1.39046 1.49556 2.40223 3.15440 3.31226 3.44367 3.83838 3.99818 4.07905 4.11963 4.23325 4.31383 4.36020 4.44765 4.55473 4.58792 4.64788 4.72170 4.75776 4.76491 4.81039 4.86100 4.89471 4.97750 5.03654 5.07224 5.09774 5.10952 5.15169 5.19033 5.25756 5.29815 5.34201 5.38387 5.43759 5.47873 5.50050 5.58774 5.61850 5.72467 6.16708 6.27657 6.54210 6.60580 6.83937 6.95222 7.44363 8.93508 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.006172 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.824614 B = 4535.861655 C = 5107.032172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 C -0.127 4.127 4 N -0.525 5.525 5 C 0.216 3.784 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.959 3.041 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.081 3.919 15 H 0.090 0.910 16 C -0.194 4.194 17 C -0.093 4.093 18 C 0.105 3.895 19 H 0.027 0.973 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.110 4.110 23 C 0.055 3.945 24 N -0.682 5.682 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.062 0.938 32 H -0.005 1.005 33 H -0.024 1.024 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.017 0.983 48 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.238 15.779 5.637 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.035 4.035 3 C -0.184 4.184 4 N -0.249 5.249 5 C 0.090 3.910 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.784 3.216 11 H -0.202 1.202 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.027 4.027 15 H 0.108 0.892 16 C -0.252 4.252 17 C -0.131 4.131 18 C -0.005 4.005 19 H 0.045 0.955 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.074 4.074 24 N -0.316 5.316 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.014 0.986 33 H -0.006 1.006 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.036 0.964 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.736 15.749 6.362 17.205 hybrid contribution -0.360 -1.671 -1.711 2.419 sum 2.376 14.078 4.651 15.015 Atomic orbital electron populations 1.22611 0.97718 1.00616 1.02246 1.21637 0.92745 0.95345 0.93762 1.21772 1.00630 0.94016 1.02010 1.62343 1.56601 1.04542 1.01396 1.19257 0.93303 0.83882 0.94560 1.21525 1.24092 0.92887 1.16993 0.92633 1.25793 0.97066 0.97493 0.99081 1.70080 1.40522 1.04489 1.42353 0.85543 0.78726 0.77884 0.79431 1.20241 1.20906 1.19062 1.21716 0.91596 0.98777 0.90653 0.89207 1.22879 0.99199 1.00337 1.02826 1.21539 0.95793 0.98479 0.97334 1.21160 0.94684 0.87711 0.96896 0.95488 1.21606 0.95841 0.98929 0.98634 1.21564 0.96866 0.95867 1.01443 1.21546 0.98540 0.95632 0.99049 1.21960 0.91089 0.97750 0.96592 1.60507 1.11527 1.04416 1.55113 0.90924 0.91844 0.94702 0.92492 0.93509 0.91015 0.91963 0.98648 1.00650 0.92982 0.91030 0.95023 0.91339 0.90689 0.94396 0.91188 0.93195 0.90916 0.93464 0.91133 0.90381 0.89531 0.96423 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 7.31 71.98 0.53 -5.17 16 2 C 0.07 2.69 2.75 44.92 0.12 2.81 16 3 C -0.13 -3.51 9.25 71.98 0.67 -2.84 16 4 N -0.53 -21.38 3.71 -850.40 -3.15 -24.53 16 5 C 0.22 11.25 3.22 85.55 0.28 11.52 16 6 C -0.52 -29.27 8.33 25.60 0.21 -29.06 16 7 H 0.06 3.13 7.21 -2.91 -0.02 3.11 16 8 C 0.00 0.19 5.46 84.66 0.46 0.65 16 9 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 10 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 C 0.08 2.74 1.53 44.91 0.07 2.81 16 15 H 0.09 2.62 4.03 -2.39 -0.01 2.61 16 16 C -0.19 -6.75 7.60 71.98 0.55 -6.20 16 17 C -0.09 -3.09 4.47 30.59 0.14 -2.96 16 18 C 0.11 3.22 2.44 44.94 0.11 3.32 16 19 H 0.03 1.01 7.65 -2.39 -0.02 0.99 16 20 C -0.11 -3.10 5.37 30.65 0.16 -2.93 16 21 C -0.12 -2.80 6.00 30.67 0.18 -2.62 16 22 C -0.11 -2.20 6.09 30.65 0.19 -2.01 16 23 C 0.06 1.22 6.55 86.32 0.57 1.78 16 24 N -0.68 -17.34 6.50 -491.69 -3.20 -20.54 16 25 H 0.07 2.06 5.95 -2.39 -0.01 2.05 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.03 1.36 5.41 -2.39 -0.01 1.35 16 28 H 0.06 2.45 6.61 -2.38 -0.02 2.43 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.51 5.06 -2.39 -0.01 1.50 16 32 H 0.00 -0.26 6.65 -2.39 -0.02 -0.28 16 33 H -0.02 -1.35 5.39 -2.38 -0.01 -1.36 16 34 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.07 2.45 4.01 -2.39 -0.01 2.45 16 36 H 0.03 1.31 6.40 -2.39 -0.02 1.29 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.04 1.49 7.09 -2.38 -0.02 1.48 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.34 8.44 5.61 -89.69 -0.50 7.94 16 Total: -1.00 -62.27 341.96 0.61 -61.66 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.42 Total: 23.62 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 4.23 Total: -30.89 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -6.06 Total: -101.47 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.27 0.61 -61.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157085592.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.699 kcal (2) G-P(sol) polarization free energy of solvation -62.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds