Wall clock time and date at job start Mon Mar 30 2020 08:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47268 * 2 1 4 4 C 1.50696 * 109.47197 * 239.99862 * 2 1 3 5 5 H 1.08001 * 120.00002 * 240.00385 * 4 2 1 6 6 C 1.37877 * 120.00006 * 59.99698 * 4 2 1 7 7 N 1.31505 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99799 * 179.72686 * 6 4 2 9 9 H 1.48499 * 109.47310 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46782 * 120.00266 * 8 6 4 11 11 H 1.48501 * 109.46798 * 240.00162 * 8 6 4 12 12 N 1.46907 * 109.46948 * 119.99496 * 2 1 3 13 13 C 1.46899 * 111.00342 * 274.99752 * 12 2 1 14 14 C 1.52996 * 109.47084 * 180.02562 * 13 12 2 15 15 N 1.46904 * 109.47045 * 54.28716 * 14 13 12 16 16 C 1.46897 * 111.00071 * 64.01266 * 15 14 13 17 17 C 1.46902 * 110.99454 * 187.96355 * 15 14 13 18 18 C 1.53003 * 109.47105 * 294.28626 * 14 13 12 19 19 C 1.52998 * 109.47235 * 299.99958 * 18 14 13 20 20 C 1.53006 * 109.47291 * 300.00220 * 19 18 14 21 21 C 1.53003 * 109.47160 * 59.99735 * 20 19 18 22 22 H 1.09002 * 109.47055 * 60.00069 * 21 20 19 23 23 C 1.52989 * 109.47106 * 179.97438 * 21 20 19 24 24 C 1.52998 * 109.47076 * 174.28528 * 14 13 12 25 25 H 1.08994 * 109.47032 * 59.99724 * 1 2 3 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46944 * 300.00202 * 1 2 3 28 28 H 0.97002 * 120.00139 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99991 * 38.95488 * 12 2 1 30 30 H 1.08996 * 109.46850 * 300.00271 * 13 12 2 31 31 H 1.09002 * 109.46786 * 59.99744 * 13 12 2 32 32 H 1.09003 * 109.47313 * 65.23239 * 16 15 14 33 33 H 1.08994 * 109.47261 * 185.23357 * 16 15 14 34 34 H 1.09004 * 109.46995 * 305.23216 * 16 15 14 35 35 H 1.08997 * 109.47328 * 60.00396 * 17 15 14 36 36 H 1.09003 * 109.46636 * 180.02562 * 17 15 14 37 37 H 1.08997 * 109.47668 * 299.99904 * 17 15 14 38 38 H 1.08999 * 109.47029 * 60.00091 * 18 14 13 39 39 H 1.09002 * 109.47055 * 180.02562 * 18 14 13 40 40 H 1.09002 * 109.46911 * 60.00142 * 19 18 14 41 41 H 1.08998 * 109.47199 * 179.97438 * 19 18 14 42 42 H 1.08999 * 109.46966 * 179.97438 * 20 19 18 43 43 H 1.08994 * 109.46540 * 300.00141 * 20 19 18 44 44 H 1.09002 * 109.47002 * 60.00165 * 23 21 20 45 45 H 1.08998 * 109.47198 * 179.97438 * 23 21 20 46 46 H 1.08997 * 109.47408 * 300.00502 * 23 21 20 47 47 H 1.09002 * 109.47255 * 179.97438 * 24 14 13 48 48 H 1.08998 * 109.47325 * 300.00008 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 3.1572 -2.2796 -3.6037 10 1 1.1765 -1.5864 -4.8186 11 1 3.1505 -0.1777 -4.8138 12 7 2.0196 -0.6924 1.1996 13 6 2.0825 0.2227 2.3470 14 6 2.5962 -0.5327 3.5742 15 7 3.8760 -1.1779 3.2518 16 6 4.9080 -0.1777 2.9480 17 6 4.3071 -2.0652 4.3404 18 6 1.5762 -1.5980 3.9813 19 6 0.2433 -0.9261 4.3171 20 6 0.4442 0.0559 5.4731 21 6 1.4642 1.1212 5.0661 22 1 1.0982 1.6594 4.1917 23 6 1.6645 2.1034 6.2219 24 6 2.7971 0.4491 4.7303 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1616 -3.4844 29 1 1.4495 -1.4978 1.4102 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6165 2.5525 32 1 5.1179 0.4108 3.8412 33 1 5.8181 -0.6818 2.6229 34 1 4.5539 0.4802 2.1543 35 1 3.5556 -2.8388 4.4977 36 1 5.2571 -2.5295 4.0759 37 1 4.4287 -1.4854 5.2552 38 1 1.4331 -2.2975 3.1577 39 1 1.9420 -2.1359 4.8559 40 1 -0.1226 -0.3879 3.4427 41 1 -0.4834 -1.6850 4.6066 42 1 -0.5053 0.5349 5.7120 43 1 0.8102 -0.4823 6.3474 44 1 2.0303 1.5655 7.0965 45 1 2.3915 2.8621 5.9321 46 1 0.7148 2.5820 6.4607 47 1 3.1627 -0.0891 5.6048 48 1 3.5238 1.2081 4.4403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226702608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:21 Heat of formation + Delta-G solvation = -5.984040 kcal Electronic energy + Delta-G solvation = -22779.435662 eV Core-core repulsion = 19868.712773 eV Total energy + Delta-G solvation = -2910.722889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.22312 -35.95735 -35.43828 -32.67411 -31.95258 -30.05382 -28.13675 -27.48626 -26.05584 -25.06675 -24.30966 -23.27429 -21.64351 -20.41013 -20.00229 -17.92116 -16.16415 -16.05703 -15.05915 -14.86100 -14.70514 -14.37595 -14.34381 -13.60603 -13.51157 -13.23591 -12.89128 -12.85909 -12.52700 -12.36476 -11.95162 -11.72977 -11.58597 -11.55145 -11.40566 -11.31128 -11.15362 -10.91426 -10.80046 -10.72300 -10.52587 -10.23324 -10.19833 -10.15370 -9.99569 -9.83200 -9.59812 -8.83854 -8.26769 -7.74400 -6.90356 -5.88516 -3.90237 3.37845 3.45376 3.51888 4.22244 4.53223 4.72562 4.77380 4.94259 5.12929 5.22313 5.36847 5.42689 5.43248 5.46524 5.51775 5.55915 5.63160 5.68784 5.71346 5.80117 5.83924 5.85633 5.89216 5.97520 6.07021 6.09660 6.15397 6.23409 6.26904 6.30213 6.33945 6.41548 6.50122 6.61326 6.64714 6.78620 6.94221 7.21916 7.45206 7.51066 7.58704 7.84817 8.03235 8.42690 8.74954 8.81668 9.19277 9.75056 11.18671 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.005373 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.699306 B = 5209.823084 C = 5727.542833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.028 0.972 4 C -0.485 4.485 5 H 0.063 0.937 6 C 0.052 3.948 7 N -0.901 5.901 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.663 5.663 13 C 0.075 3.925 14 C 0.119 3.881 15 N -0.507 5.507 16 C 0.028 3.972 17 C 0.019 3.981 18 C -0.109 4.109 19 C -0.124 4.124 20 C -0.110 4.110 21 C -0.092 4.092 22 H 0.075 0.925 23 C -0.145 4.145 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.002 0.998 28 H 0.257 0.743 29 H 0.323 0.677 30 H 0.058 0.942 31 H 0.025 0.975 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -0.953 17.612 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.046 0.954 4 C -0.524 4.524 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.213 1.213 12 N -0.293 5.293 13 C -0.056 4.056 14 C 0.029 3.971 15 N -0.229 5.229 16 C -0.120 4.120 17 C -0.129 4.129 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.111 4.111 22 H 0.093 0.907 23 C -0.203 4.203 24 C -0.178 4.178 25 H 0.105 0.895 26 H 0.045 0.955 27 H 0.021 0.979 28 H 0.067 0.933 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.246 -1.063 16.859 17.041 hybrid contribution -0.534 0.277 0.067 0.606 sum 1.711 -0.786 16.926 17.031 Atomic orbital electron populations 1.22434 1.01140 0.98966 1.00188 1.19161 0.89214 0.94257 0.87119 0.95369 1.21238 1.29442 1.12159 0.89559 0.91855 1.24948 0.95529 0.95266 0.98975 1.69898 1.37879 1.23401 1.22969 0.86496 0.78475 0.79680 0.83065 1.19736 1.21390 1.21312 1.60658 1.57783 1.08304 1.02557 1.21973 0.97827 0.95320 0.90464 1.21093 0.89819 0.92803 0.93412 1.62053 1.02150 1.20033 1.38669 1.22366 0.94912 0.95084 0.99622 1.22470 1.00882 0.97174 0.92410 1.21638 0.94180 0.97698 1.01127 1.21621 0.97276 0.98432 0.98820 1.21566 0.98508 0.96649 0.98047 1.21137 0.95472 0.95989 0.98483 0.90658 1.21824 1.01304 0.98957 0.98174 1.22248 0.97380 0.99189 0.99009 0.89496 0.95508 0.97893 0.93346 0.85936 0.92371 0.95699 0.96693 0.92119 0.90365 0.91442 0.92074 0.96469 0.90608 0.92312 0.91236 0.92166 0.92368 0.92499 0.93142 0.92890 0.92891 0.92298 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.94 37.16 0.33 -3.75 16 2 C 0.21 5.33 2.57 -68.86 -0.18 5.15 16 3 H 0.03 0.79 7.80 -51.93 -0.40 0.39 16 4 C -0.49 -13.63 8.84 -34.44 -0.30 -13.94 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.48 5.30 -17.82 -0.09 1.38 16 7 N -0.90 -26.21 11.32 55.43 0.63 -25.59 16 8 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.66 -14.08 5.94 -107.95 -0.64 -14.72 16 13 C 0.07 1.32 3.32 -3.83 -0.01 1.31 16 14 C 0.12 1.71 0.22 -131.60 -0.03 1.68 16 15 N -0.51 -7.67 4.54 -235.40 -1.07 -8.74 16 16 C 0.03 0.42 8.73 60.06 0.52 0.94 16 17 C 0.02 0.24 8.75 60.07 0.53 0.76 16 18 C -0.11 -1.45 4.01 -26.73 -0.11 -1.56 16 19 C -0.12 -1.54 5.65 -26.73 -0.15 -1.69 16 20 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 21 C -0.09 -1.08 2.45 -90.62 -0.22 -1.30 16 22 H 0.08 1.00 6.56 -51.93 -0.34 0.66 16 23 C -0.15 -1.45 9.19 37.15 0.34 -1.11 16 24 C -0.14 -1.74 3.29 -26.73 -0.09 -1.83 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 26 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.32 6.72 6.76 -39.29 -0.27 6.45 16 30 H 0.06 1.11 6.59 -51.93 -0.34 0.77 16 31 H 0.03 0.45 4.13 -51.93 -0.21 0.24 16 32 H 0.01 0.19 6.55 -51.93 -0.34 -0.15 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.32 6.29 -51.93 -0.33 0.99 16 35 H 0.07 0.81 6.20 -51.93 -0.32 0.49 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.20 6.54 -51.93 -0.34 -0.14 16 38 H 0.08 1.14 6.70 -51.93 -0.35 0.79 16 39 H 0.06 0.72 6.32 -51.93 -0.33 0.39 16 40 H 0.07 1.00 6.31 -51.93 -0.33 0.67 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.71 6.62 -51.93 -0.34 0.37 16 48 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -28.46 341.85 -9.18 -37.65 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.63 Total: 4.61 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 0.40 Total: -15.29 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -1.08 Total: -49.04 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.46 -9.18 -37.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226702608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.661 kcal (2) G-P(sol) polarization free energy of solvation -28.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds