Wall clock time and date at job start Mon Mar 30 2020 08:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47268 * 2 1 4 4 C 1.50696 * 109.47197 * 239.99862 * 2 1 3 5 5 H 1.08001 * 120.00002 * 240.00385 * 4 2 1 6 6 C 1.37877 * 120.00006 * 59.99698 * 4 2 1 7 7 N 1.31505 * 119.99978 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99799 * 179.72686 * 6 4 2 9 9 H 1.48499 * 109.47310 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46782 * 120.00266 * 8 6 4 11 11 H 1.48501 * 109.46798 * 240.00162 * 8 6 4 12 12 N 1.46907 * 109.46948 * 119.99496 * 2 1 3 13 13 C 1.46899 * 111.00342 * 274.99752 * 12 2 1 14 14 C 1.52996 * 109.47084 * 180.02562 * 13 12 2 15 15 N 1.46904 * 109.47045 * 54.28716 * 14 13 12 16 16 C 1.46897 * 111.00071 * 64.01266 * 15 14 13 17 17 C 1.46902 * 110.99454 * 187.96355 * 15 14 13 18 18 C 1.53003 * 109.47105 * 294.28626 * 14 13 12 19 19 C 1.52998 * 109.47235 * 299.99958 * 18 14 13 20 20 C 1.53006 * 109.47291 * 300.00220 * 19 18 14 21 21 C 1.53003 * 109.47160 * 59.99735 * 20 19 18 22 22 H 1.09002 * 109.47055 * 60.00069 * 21 20 19 23 23 C 1.52989 * 109.47106 * 179.97438 * 21 20 19 24 24 C 1.52998 * 109.47076 * 174.28528 * 14 13 12 25 25 H 1.08994 * 109.47032 * 59.99724 * 1 2 3 26 26 H 1.08995 * 109.47467 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46944 * 300.00202 * 1 2 3 28 28 H 0.97002 * 120.00139 * 179.97438 * 7 6 4 29 29 H 1.00900 * 110.99991 * 38.95488 * 12 2 1 30 30 H 1.08996 * 109.46850 * 300.00271 * 13 12 2 31 31 H 1.09002 * 109.46786 * 59.99744 * 13 12 2 32 32 H 1.09003 * 109.47313 * 65.23239 * 16 15 14 33 33 H 1.08994 * 109.47261 * 185.23357 * 16 15 14 34 34 H 1.09004 * 109.46995 * 305.23216 * 16 15 14 35 35 H 1.08997 * 109.47328 * 60.00396 * 17 15 14 36 36 H 1.09003 * 109.46636 * 180.02562 * 17 15 14 37 37 H 1.08997 * 109.47668 * 299.99904 * 17 15 14 38 38 H 1.08999 * 109.47029 * 60.00091 * 18 14 13 39 39 H 1.09002 * 109.47055 * 180.02562 * 18 14 13 40 40 H 1.09002 * 109.46911 * 60.00142 * 19 18 14 41 41 H 1.08998 * 109.47199 * 179.97438 * 19 18 14 42 42 H 1.08999 * 109.46966 * 179.97438 * 20 19 18 43 43 H 1.08994 * 109.46540 * 300.00141 * 20 19 18 44 44 H 1.09002 * 109.47002 * 60.00165 * 23 21 20 45 45 H 1.08998 * 109.47198 * 179.97438 * 23 21 20 46 46 H 1.08997 * 109.47408 * 300.00502 * 23 21 20 47 47 H 1.09002 * 109.47255 * 179.97438 * 24 14 13 48 48 H 1.08998 * 109.47325 * 300.00008 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3282 -1.1156 -4.0079 9 1 3.1572 -2.2796 -3.6037 10 1 1.1765 -1.5864 -4.8186 11 1 3.1505 -0.1777 -4.8138 12 7 2.0196 -0.6924 1.1996 13 6 2.0825 0.2227 2.3470 14 6 2.5962 -0.5327 3.5742 15 7 3.8760 -1.1779 3.2518 16 6 4.9080 -0.1777 2.9480 17 6 4.3071 -2.0652 4.3404 18 6 1.5762 -1.5980 3.9813 19 6 0.2433 -0.9261 4.3171 20 6 0.4442 0.0559 5.4731 21 6 1.4642 1.1212 5.0661 22 1 1.0982 1.6594 4.1917 23 6 1.6645 2.1034 6.2219 24 6 2.7971 0.4491 4.7303 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1616 -3.4844 29 1 1.4495 -1.4978 1.4102 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6165 2.5525 32 1 5.1179 0.4108 3.8412 33 1 5.8181 -0.6818 2.6229 34 1 4.5539 0.4802 2.1543 35 1 3.5556 -2.8388 4.4977 36 1 5.2571 -2.5295 4.0759 37 1 4.4287 -1.4854 5.2552 38 1 1.4331 -2.2975 3.1577 39 1 1.9420 -2.1359 4.8559 40 1 -0.1226 -0.3879 3.4427 41 1 -0.4834 -1.6850 4.6066 42 1 -0.5053 0.5349 5.7120 43 1 0.8102 -0.4823 6.3474 44 1 2.0303 1.5655 7.0965 45 1 2.3915 2.8621 5.9321 46 1 0.7148 2.5820 6.4607 47 1 3.1627 -0.0891 5.6048 48 1 3.5238 1.2081 4.4403 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226702608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:20 Heat of formation + Delta-G solvation = -23.742718 kcal Electronic energy + Delta-G solvation = -22780.205736 eV Core-core repulsion = 19868.712773 eV Total energy + Delta-G solvation = -2911.492963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35994 -37.37892 -36.89209 -34.43339 -33.20920 -31.47069 -29.59926 -28.67969 -27.20994 -27.01812 -25.61310 -24.61150 -22.67260 -22.00460 -21.36370 -19.22924 -18.12262 -17.21592 -16.79117 -16.11549 -16.01167 -15.79684 -15.36860 -15.08053 -14.77754 -14.51603 -14.36617 -14.04723 -13.87853 -13.56824 -13.30115 -13.18730 -12.93098 -12.77788 -12.73051 -12.65039 -12.54502 -12.39773 -12.31911 -12.19486 -12.11950 -11.93636 -11.69802 -11.40566 -11.27879 -11.16925 -10.89509 -10.77652 -10.45473 -8.86044 -8.67556 -8.05411 -6.15604 1.42497 1.44090 1.57188 2.46997 3.10702 3.22554 3.66643 3.76513 3.87900 4.00590 4.09845 4.27950 4.38626 4.39765 4.49372 4.50807 4.60456 4.63605 4.69640 4.73878 4.75955 4.81981 4.82701 4.88883 4.90936 4.92461 5.02295 5.03052 5.10379 5.15397 5.19188 5.20320 5.21389 5.33347 5.37480 5.43610 5.47722 5.50408 5.60441 5.73783 5.88116 6.32669 6.37664 6.43886 6.78346 6.97250 7.06611 7.54884 9.00157 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.005373 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.699306 B = 5209.823084 C = 5727.542833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.217 3.783 3 H -0.007 1.007 4 C -0.505 4.505 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.663 5.663 13 C 0.081 3.919 14 C 0.125 3.875 15 N -0.533 5.533 16 C 0.034 3.966 17 C 0.022 3.978 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.105 4.105 21 C -0.093 4.093 22 H 0.051 0.949 23 C -0.141 4.141 24 C -0.130 4.130 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.021 0.979 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.037 0.963 31 H 0.024 0.976 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -1.985 19.499 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 H 0.011 0.989 4 C -0.543 4.543 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.293 5.293 13 C -0.049 4.049 14 C 0.035 3.965 15 N -0.255 5.255 16 C -0.114 4.114 17 C -0.126 4.126 18 C -0.142 4.142 19 C -0.160 4.160 20 C -0.142 4.142 21 C -0.112 4.112 22 H 0.070 0.930 23 C -0.198 4.198 24 C -0.170 4.170 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.145 0.855 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.451 -2.099 18.765 19.040 hybrid contribution -0.586 0.619 -0.505 0.991 sum 1.865 -1.480 18.260 18.414 Atomic orbital electron populations 1.22216 1.00362 0.98950 0.99683 1.18903 0.89658 0.92308 0.88296 0.98943 1.21479 1.29700 1.12095 0.91059 0.92985 1.25703 0.95624 0.95920 1.01824 1.70023 1.38525 1.24426 1.23700 0.85492 0.78046 0.78579 0.79380 1.19420 1.20609 1.20888 1.60524 1.57355 1.08724 1.02662 1.21949 0.97466 0.94680 0.90797 1.20977 0.89969 0.93327 0.92191 1.61995 1.02372 1.20564 1.40616 1.22251 0.94871 0.94909 0.99396 1.22484 1.01280 0.96827 0.91985 1.21608 0.94365 0.97044 1.01196 1.21600 0.96964 0.98908 0.98503 1.21539 0.98781 0.96097 0.97799 1.21126 0.95129 0.96490 0.98435 0.93002 1.21777 1.01784 0.98544 0.97693 1.22155 0.97785 0.98558 0.98463 0.92234 0.95109 0.96018 0.93190 0.85502 0.94453 0.95831 0.94898 0.91709 0.93490 0.90823 0.91559 0.95006 0.92510 0.90239 0.93754 0.90672 0.91459 0.90793 0.91821 0.93130 0.92143 0.90674 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 8.94 71.98 0.64 -6.95 16 2 C 0.22 11.40 2.57 44.17 0.11 11.51 16 3 H -0.01 -0.44 7.80 -2.39 -0.02 -0.45 16 4 C -0.50 -29.04 8.84 25.60 0.23 -28.81 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.93 -54.91 11.32 21.45 0.24 -54.67 16 8 Si 0.96 45.43 29.54 68.60 2.03 47.45 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 N -0.66 -28.94 5.94 -495.46 -2.94 -31.88 16 13 C 0.08 2.96 3.32 86.30 0.29 3.25 16 14 C 0.13 3.52 0.22 3.53 0.00 3.52 16 15 N -0.53 -15.62 4.54 -898.69 -4.08 -19.70 16 16 C 0.03 0.99 8.73 127.69 1.12 2.11 16 17 C 0.02 0.49 8.75 127.69 1.12 1.61 16 18 C -0.10 -2.62 4.01 30.59 0.12 -2.50 16 19 C -0.12 -2.82 5.65 30.60 0.17 -2.65 16 20 C -0.10 -2.04 5.20 30.60 0.16 -1.88 16 21 C -0.09 -2.02 2.45 -10.79 -0.03 -2.04 16 22 H 0.05 1.37 6.56 -2.39 -0.02 1.36 16 23 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 24 C -0.13 -3.04 3.29 30.60 0.10 -2.94 16 25 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 26 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 27 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.81 16 29 H 0.33 13.82 6.76 -89.69 -0.61 13.21 16 30 H 0.04 1.51 6.59 -2.39 -0.02 1.49 16 31 H 0.02 0.88 4.13 -2.39 -0.01 0.87 16 32 H 0.03 0.82 6.55 -2.39 -0.02 0.81 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.05 1.65 6.29 -2.38 -0.02 1.63 16 35 H 0.07 1.56 6.20 -2.39 -0.01 1.54 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.03 0.62 6.54 -2.39 -0.02 0.61 16 38 H 0.06 1.65 6.70 -2.39 -0.02 1.63 16 39 H 0.08 1.69 6.32 -2.39 -0.02 1.67 16 40 H 0.04 1.25 6.31 -2.39 -0.02 1.23 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.55 6.62 -2.39 -0.02 1.53 16 48 H 0.05 1.38 6.46 -2.39 -0.02 1.37 16 Total: -1.00 -61.88 341.85 0.70 -61.18 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.32 Total: 24.38 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 5.14 Total: -26.75 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -6.78 Total: -106.26 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -61.88 0.70 -61.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226702608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.435 kcal (2) G-P(sol) polarization free energy of solvation -61.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds