Wall clock time and date at job start Mon Mar 30 2020 08:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.45554 * 2 1 4 4 C 1.53044 * 109.46214 * 119.97152 * 2 1 3 5 5 C 1.53117 * 109.27988 * 179.19829 * 4 2 1 6 6 C 1.53120 * 109.16091 * 302.34518 * 5 4 2 7 7 C 1.53037 * 109.27846 * 57.65633 * 6 5 4 8 8 H 1.09004 * 109.45509 * 180.81423 * 7 6 5 9 9 C 1.52998 * 109.46409 * 60.83688 * 7 6 5 10 10 N 1.46847 * 109.46609 * 240.02378 * 2 1 3 11 11 N 1.45404 * 110.99820 * 54.14938 * 10 2 1 12 12 C 1.46902 * 110.99395 * 244.21059 * 11 10 2 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 299.99665 * 13 12 11 15 15 C 1.52992 * 109.47223 * 60.00170 * 13 12 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 60.00096 * 21 19 17 23 23 H 1.48503 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47360 * 299.97465 * 1 2 3 27 27 H 1.09000 * 109.46591 * 59.97594 * 1 2 3 28 28 H 1.09001 * 109.50151 * 59.25698 * 4 2 1 29 29 H 1.09000 * 109.53038 * 299.15917 * 4 2 1 30 30 H 1.08995 * 109.52409 * 182.44189 * 5 4 2 31 31 H 1.08999 * 109.57458 * 62.27771 * 5 4 2 32 32 H 1.09000 * 109.50492 * 297.71884 * 6 5 4 33 33 H 1.08996 * 109.54027 * 177.61584 * 6 5 4 34 34 H 1.09004 * 109.47045 * 299.94759 * 9 7 6 35 35 H 1.08997 * 109.47131 * 59.94920 * 9 7 6 36 36 H 1.09004 * 109.47207 * 179.97438 * 9 7 6 37 37 H 1.00899 * 111.00117 * 120.26065 * 11 10 2 38 38 H 1.08993 * 109.47737 * 60.00075 * 12 11 10 39 39 H 1.09000 * 109.47263 * 299.99637 * 12 11 10 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 42 42 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 43 43 H 1.09001 * 109.47066 * 299.99881 * 15 13 12 44 44 H 1.08996 * 109.47747 * 59.99547 * 15 13 12 45 45 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.47486 * 299.99829 * 16 13 12 47 47 H 1.09001 * 109.47362 * 60.00551 * 16 13 12 48 48 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5709 -0.7360 1.2357 6 6 4.0548 -1.4188 -0.0465 7 6 3.4866 -0.6777 -1.2589 8 1 3.8176 -1.1701 -2.1733 9 6 3.9833 0.7694 -1.2507 10 7 2.0193 -0.6918 -1.1993 11 7 1.4434 -0.1165 -2.4041 12 6 0.5949 -1.0931 -3.1000 13 6 0.0075 -0.4525 -4.3593 14 6 -0.8321 0.7652 -3.9679 15 6 1.1434 -0.0127 -5.2850 16 6 -0.8757 -1.4699 -5.0844 17 6 -1.4547 -0.8388 -6.3244 18 1 -1.2162 0.1853 -6.5709 19 6 -2.2889 -1.5688 -7.1443 20 7 -2.5789 -2.8160 -6.8445 21 14 -3.0072 -0.7863 -8.6810 22 1 -1.9053 -0.3584 -9.5798 23 1 -3.8644 -1.7738 -9.3849 24 1 -3.8224 0.3950 -8.3001 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8901 27 1 -0.3632 0.5142 -0.8898 28 1 1.6659 -1.7447 1.2577 29 1 1.6893 -0.1987 2.1403 30 1 3.9378 -1.2862 2.1021 31 1 3.9465 0.2867 1.2678 32 1 3.7125 -2.4535 -0.0593 33 1 5.1439 -1.3953 -0.0833 34 1 3.6519 1.2621 -0.3365 35 1 5.0723 0.7801 -1.2950 36 1 3.5790 1.2973 -2.1144 37 1 2.1635 0.2376 -3.0158 38 1 -0.2147 -1.4062 -2.4408 39 1 1.1929 -1.9608 -3.3785 40 1 -1.2509 1.2213 -4.8650 41 1 -0.2025 1.4898 -3.4515 42 1 -1.6414 0.4517 -3.3084 43 1 1.7730 0.7119 -4.7686 44 1 1.7416 -0.8801 -5.5638 45 1 0.7250 0.4433 -6.1823 46 1 -0.2772 -2.3372 -5.3633 47 1 -1.6850 -1.7836 -4.4251 48 1 -3.1655 -3.3298 -7.4215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229701891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:46 Heat of formation + Delta-G solvation = 2.390693 kcal Electronic energy + Delta-G solvation = -22243.366641 eV Core-core repulsion = 19333.006908 eV Total energy + Delta-G solvation = -2910.359733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.62863 -37.13209 -33.92033 -33.15826 -32.27735 -30.06608 -27.68911 -26.72611 -26.64119 -26.26379 -24.71160 -22.85449 -22.06888 -21.23128 -18.79129 -17.76009 -16.35190 -16.19316 -15.61026 -15.12515 -14.51752 -14.39994 -14.09605 -13.73597 -13.52284 -13.29367 -12.80696 -12.70986 -12.51804 -12.39528 -11.96649 -11.91002 -11.82161 -11.72332 -11.52704 -11.01202 -10.90211 -10.86325 -10.77332 -10.63415 -10.48834 -10.41611 -10.39329 -10.18174 -10.04474 -9.66545 -9.03089 -8.96772 -8.74962 -8.28393 -7.68648 -5.92968 -3.93218 3.36499 3.41188 3.42630 3.48199 4.50995 4.55975 4.71912 4.81490 4.99016 5.09917 5.20424 5.30375 5.42638 5.44284 5.48863 5.52421 5.65586 5.75125 5.79854 5.82592 5.86203 5.88548 5.94046 5.98835 6.01762 6.08595 6.15703 6.21558 6.35975 6.43226 6.49617 6.55577 6.64089 6.66897 6.82795 6.84603 7.05117 7.23497 7.29012 7.31383 7.49284 7.74365 7.89152 7.97655 8.07488 8.51364 9.11958 9.69310 11.18611 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.004043 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.378802 B = 6923.756234 C = 7089.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.107 4.107 7 C 0.059 3.941 8 H 0.078 0.922 9 C -0.184 4.184 10 N -0.374 5.374 11 N -0.524 5.524 12 C 0.083 3.917 13 C -0.057 4.057 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.036 3.964 17 C -0.508 4.508 18 H 0.058 0.942 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.328 0.672 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.041 0.959 45 H 0.064 0.936 46 H 0.013 0.987 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 5.535 15.015 20.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.013 4.013 3 H 0.061 0.939 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.146 4.146 7 C -0.051 4.051 8 H 0.096 0.904 9 C -0.243 4.243 10 N -0.188 5.188 11 N -0.247 5.247 12 C -0.046 4.046 13 C -0.059 4.059 14 C -0.174 4.174 15 C -0.187 4.187 16 C -0.001 4.001 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.031 0.969 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.661 5.182 15.313 19.933 hybrid contribution 0.583 0.517 -1.432 1.631 sum 12.244 5.699 13.880 19.367 Atomic orbital electron populations 1.21737 0.93955 1.02132 1.01808 1.21488 0.95941 0.95517 0.88403 0.93934 1.21686 0.95043 1.01636 0.96823 1.21622 0.96224 1.00644 0.97513 1.21558 0.99454 0.99975 0.93634 1.22091 0.88660 0.95149 0.99218 0.90381 1.22472 1.01304 0.97980 1.02542 1.65326 1.04285 1.50323 0.98912 1.63961 1.21761 1.34009 1.04943 1.22081 0.95367 0.92545 0.94584 1.20666 0.95591 0.97278 0.92325 1.21616 0.98473 0.96923 1.00347 1.21784 0.97425 0.99431 1.00052 1.19096 0.93626 0.92919 0.94496 1.21198 1.27643 0.98350 1.07395 0.92402 1.25004 0.96734 0.94868 0.97904 1.69957 1.36932 1.08499 1.38297 0.86739 0.79132 0.79017 0.83579 1.20404 1.21451 1.20328 0.92633 0.93453 0.90781 0.91190 0.91635 0.92064 0.92105 0.91130 0.91719 0.91759 0.92437 0.92327 0.85233 0.91120 0.95602 0.92685 0.94168 0.94016 0.95159 0.94028 0.91665 0.96878 0.96588 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.71 37.15 0.32 -1.48 16 2 C 0.10 1.16 2.37 -67.72 -0.16 1.00 16 3 H 0.04 0.53 6.19 -51.92 -0.32 0.21 16 4 C -0.11 -1.15 5.37 -26.65 -0.14 -1.29 16 5 C -0.12 -1.10 5.69 -26.61 -0.15 -1.25 16 6 C -0.11 -1.05 5.61 -26.65 -0.15 -1.19 16 7 C 0.06 0.67 2.87 -67.72 -0.19 0.47 16 8 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.18 -1.89 8.33 37.16 0.31 -1.58 16 10 N -0.37 -5.01 4.44 -99.76 -0.44 -5.46 16 11 N -0.52 -7.85 4.64 -10.37 -0.05 -7.90 16 12 C 0.08 1.49 4.98 -3.82 -0.02 1.47 16 13 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 14 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 15 C -0.13 -2.42 7.89 37.15 0.29 -2.12 16 16 C 0.04 0.92 4.04 -27.88 -0.11 0.81 16 17 C -0.51 -13.91 7.65 -34.44 -0.26 -14.17 16 18 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 21 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.10 7.42 -51.93 -0.39 0.72 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.66 4.80 -51.93 -0.25 0.41 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 37 H 0.33 4.79 4.95 -174.65 -0.86 3.93 16 38 H 0.07 1.34 7.82 -51.93 -0.41 0.94 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 41 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.48 6.57 -51.93 -0.34 0.14 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 46 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -28.51 350.89 -9.35 -37.86 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -9.70 Total: 0.82 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -0.16 Total: -21.03 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.25 Total: -39.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.51 -9.35 -37.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229701891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.250 kcal (2) G-P(sol) polarization free energy of solvation -28.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds