Wall clock time and date at job start Mon Mar 30 2020 08:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.45554 * 2 1 4 4 C 1.53044 * 109.46214 * 119.97152 * 2 1 3 5 5 C 1.53117 * 109.27988 * 179.19829 * 4 2 1 6 6 C 1.53120 * 109.16091 * 302.34518 * 5 4 2 7 7 C 1.53037 * 109.27846 * 57.65633 * 6 5 4 8 8 H 1.09004 * 109.45509 * 180.81423 * 7 6 5 9 9 C 1.52998 * 109.46409 * 60.83688 * 7 6 5 10 10 N 1.46847 * 109.46609 * 240.02378 * 2 1 3 11 11 N 1.45404 * 110.99820 * 54.14938 * 10 2 1 12 12 C 1.46902 * 110.99395 * 244.21059 * 11 10 2 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 299.99665 * 13 12 11 15 15 C 1.52992 * 109.47223 * 60.00170 * 13 12 11 16 16 C 1.52999 * 109.46623 * 179.97438 * 13 12 11 17 17 C 1.50706 * 109.46953 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99816 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00344 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 60.00096 * 21 19 17 23 23 H 1.48503 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 H 1.09002 * 109.47214 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47360 * 299.97465 * 1 2 3 27 27 H 1.09000 * 109.46591 * 59.97594 * 1 2 3 28 28 H 1.09001 * 109.50151 * 59.25698 * 4 2 1 29 29 H 1.09000 * 109.53038 * 299.15917 * 4 2 1 30 30 H 1.08995 * 109.52409 * 182.44189 * 5 4 2 31 31 H 1.08999 * 109.57458 * 62.27771 * 5 4 2 32 32 H 1.09000 * 109.50492 * 297.71884 * 6 5 4 33 33 H 1.08996 * 109.54027 * 177.61584 * 6 5 4 34 34 H 1.09004 * 109.47045 * 299.94759 * 9 7 6 35 35 H 1.08997 * 109.47131 * 59.94920 * 9 7 6 36 36 H 1.09004 * 109.47207 * 179.97438 * 9 7 6 37 37 H 1.00899 * 111.00117 * 120.26065 * 11 10 2 38 38 H 1.08993 * 109.47737 * 60.00075 * 12 11 10 39 39 H 1.09000 * 109.47263 * 299.99637 * 12 11 10 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 42 42 H 1.09004 * 109.47261 * 300.00303 * 14 13 12 43 43 H 1.09001 * 109.47066 * 299.99881 * 15 13 12 44 44 H 1.08996 * 109.47747 * 59.99547 * 15 13 12 45 45 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 46 46 H 1.09000 * 109.47486 * 299.99829 * 16 13 12 47 47 H 1.09001 * 109.47362 * 60.00551 * 16 13 12 48 48 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5709 -0.7360 1.2357 6 6 4.0548 -1.4188 -0.0465 7 6 3.4866 -0.6777 -1.2589 8 1 3.8176 -1.1701 -2.1733 9 6 3.9833 0.7694 -1.2507 10 7 2.0193 -0.6918 -1.1993 11 7 1.4434 -0.1165 -2.4041 12 6 0.5949 -1.0931 -3.1000 13 6 0.0075 -0.4525 -4.3593 14 6 -0.8321 0.7652 -3.9679 15 6 1.1434 -0.0127 -5.2850 16 6 -0.8757 -1.4699 -5.0844 17 6 -1.4547 -0.8388 -6.3244 18 1 -1.2162 0.1853 -6.5709 19 6 -2.2889 -1.5688 -7.1443 20 7 -2.5789 -2.8160 -6.8445 21 14 -3.0072 -0.7863 -8.6810 22 1 -1.9053 -0.3584 -9.5798 23 1 -3.8644 -1.7738 -9.3849 24 1 -3.8224 0.3950 -8.3001 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5134 0.8901 27 1 -0.3632 0.5142 -0.8898 28 1 1.6659 -1.7447 1.2577 29 1 1.6893 -0.1987 2.1403 30 1 3.9378 -1.2862 2.1021 31 1 3.9465 0.2867 1.2678 32 1 3.7125 -2.4535 -0.0593 33 1 5.1439 -1.3953 -0.0833 34 1 3.6519 1.2621 -0.3365 35 1 5.0723 0.7801 -1.2950 36 1 3.5790 1.2973 -2.1144 37 1 2.1635 0.2376 -3.0158 38 1 -0.2147 -1.4062 -2.4408 39 1 1.1929 -1.9608 -3.3785 40 1 -1.2509 1.2213 -4.8650 41 1 -0.2025 1.4898 -3.4515 42 1 -1.6414 0.4517 -3.3084 43 1 1.7730 0.7119 -4.7686 44 1 1.7416 -0.8801 -5.5638 45 1 0.7250 0.4433 -6.1823 46 1 -0.2772 -2.3372 -5.3633 47 1 -1.6850 -1.7836 -4.4251 48 1 -3.1655 -3.3298 -7.4215 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229701891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:31:45 Heat of formation + Delta-G solvation = -12.607947 kcal Electronic energy + Delta-G solvation = -22244.017031 eV Core-core repulsion = 19333.006908 eV Total energy + Delta-G solvation = -2911.010123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.60564 -38.72174 -35.28896 -34.15714 -34.07403 -31.25431 -29.12460 -28.34736 -27.93665 -27.41556 -26.30778 -24.29525 -23.32266 -22.21726 -19.83174 -19.30793 -18.32551 -17.43131 -16.74109 -16.44689 -16.01784 -15.56548 -15.27553 -15.05427 -14.93908 -14.45436 -14.15375 -13.95965 -13.87899 -13.74500 -13.34743 -13.26348 -12.88671 -12.79280 -12.71098 -12.60838 -12.47603 -12.44922 -12.26657 -12.16179 -11.92929 -11.76043 -11.52419 -11.41435 -11.24963 -11.16155 -10.87145 -10.71244 -10.49042 -10.08568 -8.84117 -8.12501 -6.19998 1.41584 1.44007 1.51257 2.34824 2.47013 3.21221 3.65976 3.88870 4.00924 4.07207 4.16916 4.23901 4.26515 4.33401 4.38777 4.47861 4.55515 4.65258 4.66474 4.78815 4.79037 4.88336 4.95402 4.98202 5.00355 5.03848 5.07058 5.14561 5.16182 5.18857 5.20275 5.26153 5.30800 5.37029 5.49743 5.52473 5.54984 5.58076 5.59907 5.65850 5.85850 5.93356 6.00454 6.27250 6.37099 6.81936 6.94996 7.47308 8.99760 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.035507 B = 0.004043 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.378802 B = 6923.756234 C = 7089.002613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.046 0.954 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.105 4.105 7 C 0.055 3.945 8 H 0.067 0.933 9 C -0.177 4.177 10 N -0.388 5.388 11 N -0.518 5.518 12 C 0.102 3.898 13 C -0.052 4.052 14 C -0.105 4.105 15 C -0.122 4.122 16 C 0.043 3.957 17 C -0.515 4.515 18 H 0.067 0.933 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.956 3.044 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.268 1.268 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.333 0.667 38 H 0.054 0.946 39 H 0.010 0.990 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.050 0.950 46 H -0.018 1.018 47 H -0.017 1.017 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.030 7.489 15.891 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.013 4.013 3 H 0.064 0.936 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.144 4.144 7 C -0.054 4.054 8 H 0.085 0.915 9 C -0.236 4.236 10 N -0.203 5.203 11 N -0.240 5.240 12 C -0.028 4.028 13 C -0.053 4.053 14 C -0.162 4.162 15 C -0.179 4.179 16 C 0.006 3.994 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.193 1.193 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.000 1.000 47 H 0.002 0.998 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.253 7.157 16.195 22.116 hybrid contribution 0.119 -0.129 -1.629 1.639 sum 13.371 7.028 14.566 20.984 Atomic orbital electron populations 1.21706 0.94878 1.01048 1.01722 1.21557 0.95207 0.95912 0.88626 0.93586 1.21677 0.96118 1.00835 0.96248 1.21610 0.95049 1.01321 0.97560 1.21561 1.00492 0.99065 0.93249 1.22174 0.87211 0.96329 0.99720 0.91475 1.22400 1.02317 0.96612 1.02241 1.65300 1.05868 1.50823 0.98318 1.63834 1.22165 1.32656 1.05316 1.21680 0.95176 0.92374 0.93521 1.20492 0.95514 0.96192 0.93126 1.21497 0.98363 0.96748 0.99637 1.21687 0.97017 0.99896 0.99321 1.18964 0.93064 0.93283 0.94136 1.21579 1.27213 0.98716 1.07784 0.91495 1.25921 0.97352 0.95331 1.01424 1.70111 1.37921 1.10133 1.39771 0.85627 0.78530 0.78167 0.79499 1.19249 1.21392 1.19284 0.94187 0.91489 0.92890 0.92363 0.89930 0.90488 0.91175 0.92345 0.89835 0.91416 0.90763 0.93252 0.84757 0.92771 0.97195 0.94068 0.91614 0.95009 0.91787 0.94572 0.93116 0.99982 0.99844 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.71 71.98 0.63 -2.81 16 2 C 0.10 2.17 2.37 44.94 0.11 2.27 16 3 H 0.05 1.04 6.19 -2.38 -0.01 1.02 16 4 C -0.11 -1.99 5.37 30.65 0.16 -1.83 16 5 C -0.12 -1.76 5.69 30.67 0.17 -1.58 16 6 C -0.10 -1.80 5.61 30.65 0.17 -1.63 16 7 C 0.05 1.16 2.87 44.94 0.13 1.29 16 8 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 9 C -0.18 -3.15 8.33 71.98 0.60 -2.55 16 10 N -0.39 -10.05 4.44 -469.54 -2.08 -12.14 16 11 N -0.52 -15.13 4.64 -186.71 -0.87 -15.99 16 12 C 0.10 3.75 4.98 86.31 0.43 4.18 16 13 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 14 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 15 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 16 C 0.04 2.29 4.04 29.85 0.12 2.41 16 17 C -0.51 -28.76 7.65 25.60 0.20 -28.57 16 18 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 21 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.55 7.42 -2.39 -0.02 1.54 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.95 6.56 -2.39 -0.02 0.94 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.17 4.80 -2.38 -0.01 1.16 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 0.97 6.91 -2.39 -0.02 0.95 16 37 H 0.33 9.18 4.95 -204.85 -1.01 8.17 16 38 H 0.05 2.15 7.82 -2.39 -0.02 2.14 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.04 1.67 6.62 -2.39 -0.02 1.66 16 41 H 0.06 2.17 7.60 -2.39 -0.02 2.15 16 42 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.06 1.91 6.57 -2.39 -0.02 1.89 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 46 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 47 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -62.96 350.89 3.55 -59.42 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.11 Total: 17.82 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 4.30 Total: -38.05 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.66 Total: -85.94 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -62.96 3.55 -59.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229701891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.809 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds