Wall clock time and date at job start Mon Mar 30 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 N 1.46907 * 109.47027 * 240.00521 * 2 1 3 5 5 C 1.46894 * 111.00043 * 66.29911 * 4 2 1 6 6 C 1.50706 * 109.47192 * 281.56085 * 5 4 2 7 7 H 1.07993 * 119.99966 * 356.93247 * 6 5 4 8 8 C 1.37875 * 119.99941 * 176.93836 * 6 5 4 9 9 N 1.31518 * 120.00083 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46771 * 59.99928 * 10 8 6 12 12 H 1.48499 * 109.46891 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47012 * 300.00249 * 10 8 6 14 14 C 1.46893 * 111.00212 * 190.25526 * 4 2 1 15 15 C 1.53002 * 109.47142 * 76.05236 * 14 4 2 16 16 C 1.52998 * 109.47276 * 185.02539 * 15 14 4 17 17 H 1.09005 * 109.46292 * 55.70420 * 16 15 14 18 18 C 1.53036 * 109.46611 * 295.72815 * 16 15 14 19 19 C 1.53123 * 109.28048 * 180.80334 * 18 16 15 20 20 C 1.53109 * 109.15999 * 57.65439 * 19 18 16 21 21 C 1.53037 * 109.27960 * 302.34487 * 20 19 18 22 22 N 1.46844 * 109.46407 * 175.67087 * 16 15 14 23 23 C 1.46893 * 111.00413 * 305.85798 * 22 16 15 24 24 H 1.08999 * 109.47123 * 171.88544 * 1 2 3 25 25 H 1.08998 * 109.47034 * 51.88088 * 1 2 3 26 26 H 1.09003 * 109.46378 * 291.88238 * 1 2 3 27 27 H 1.09002 * 109.47710 * 120.00304 * 2 1 3 28 28 H 1.09000 * 109.47028 * 66.65932 * 3 2 1 29 29 H 1.09006 * 109.47420 * 186.65707 * 3 2 1 30 30 H 1.09000 * 109.47581 * 306.66057 * 3 2 1 31 31 H 1.09002 * 109.47173 * 41.55841 * 5 4 2 32 32 H 1.09002 * 109.47484 * 161.56259 * 5 4 2 33 33 H 0.97000 * 119.99845 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.47363 * 196.05174 * 14 4 2 35 35 H 1.09000 * 109.47138 * 316.05709 * 14 4 2 36 36 H 1.09000 * 109.47373 * 305.02817 * 15 14 4 37 37 H 1.08999 * 109.46910 * 65.02785 * 15 14 4 38 38 H 1.08995 * 109.50578 * 300.74603 * 18 16 15 39 39 H 1.09009 * 109.50058 * 60.86174 * 18 16 15 40 40 H 1.08999 * 109.51769 * 177.56357 * 19 18 16 41 41 H 1.09000 * 109.51977 * 297.68159 * 19 18 16 42 42 H 1.09002 * 109.50583 * 62.28789 * 20 19 18 43 43 H 1.09007 * 109.50330 * 182.40694 * 20 19 18 44 44 H 1.09002 * 109.46437 * 179.19623 * 21 20 19 45 45 H 1.08996 * 109.46342 * 299.16310 * 21 20 19 46 46 H 1.09006 * 109.46780 * 67.01412 * 23 22 16 47 47 H 1.09001 * 109.47472 * 187.00919 * 23 22 16 48 48 H 1.08996 * 109.47016 * 307.01450 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 1.6754 0.0551 -2.4163 6 6 0.2287 -0.1868 -2.7621 7 1 -0.3613 -0.8700 -2.1692 8 6 -0.3417 0.4639 -3.8355 9 7 0.3767 1.2962 -4.5573 10 14 -2.1348 0.1635 -4.2647 11 1 -2.9905 0.5506 -3.1144 12 1 -2.5029 0.9774 -5.4509 13 1 -2.3364 -1.2758 -4.5693 14 6 3.4674 -0.9271 -1.1178 15 6 3.7425 -2.0891 -0.1612 16 6 5.2527 -2.2529 0.0213 17 1 5.6816 -1.3107 0.3628 18 6 5.8878 -2.6480 -1.3138 19 6 7.3960 -2.8304 -1.1219 20 6 7.6410 -3.8904 -0.0446 21 6 6.9551 -3.4593 1.2538 22 7 5.5145 -3.2990 1.0180 23 6 4.8035 -3.0205 2.2729 24 1 -0.3633 -1.0174 -0.1451 25 1 -0.3633 0.6344 -0.8085 26 1 -0.3632 0.3830 0.9537 27 1 1.8935 -0.5139 0.8899 28 1 1.7772 1.9208 0.9436 29 1 3.1235 1.4449 -0.1191 30 1 1.5827 1.9897 -0.8244 31 1 1.8351 1.1199 -2.2460 32 1 2.3066 -0.2798 -3.2394 33 1 -0.0247 1.7543 -5.3123 34 1 3.8522 -1.1726 -2.1076 35 1 3.9610 -0.0281 -0.7488 36 1 3.2802 -1.8823 0.8040 37 1 3.3249 -3.0070 -0.5749 38 1 5.4497 -3.5831 -1.6626 39 1 5.7067 -1.8639 -2.0491 40 1 7.8461 -3.1539 -2.0604 41 1 7.8406 -1.8847 -0.8117 42 1 7.2304 -4.8451 -0.3734 43 1 8.7124 -3.9941 0.1270 44 1 7.1156 -4.2188 2.0189 45 1 7.3758 -2.5114 1.5894 46 1 3.7292 -3.1034 2.1079 47 1 5.1110 -3.7396 3.0321 48 1 5.0426 -2.0118 2.6097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230202616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:48 Heat of formation + Delta-G solvation = -4.582456 kcal Electronic energy + Delta-G solvation = -22014.275956 eV Core-core repulsion = 19103.613844 eV Total energy + Delta-G solvation = -2910.662112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42165 -37.68382 -33.70035 -33.28226 -32.45446 -30.50377 -28.43445 -26.92029 -26.45022 -25.76944 -23.43212 -22.53584 -22.09544 -20.65307 -19.59969 -18.43489 -16.31098 -15.94545 -15.34787 -15.04620 -14.84486 -14.48630 -14.34758 -14.19346 -13.65077 -13.15873 -13.14495 -12.92193 -12.50746 -12.23829 -12.03115 -11.92786 -11.69058 -11.37316 -11.32727 -11.19637 -11.05759 -10.83373 -10.68628 -10.66797 -10.63326 -10.52195 -10.31244 -10.19185 -10.05107 -9.84768 -9.24588 -9.05279 -8.32605 -8.30035 -7.10192 -5.95075 -3.92511 3.36943 3.41210 3.44305 3.87405 4.47403 4.73065 4.78534 4.88008 5.01677 5.08207 5.29838 5.37932 5.39059 5.45527 5.49028 5.54926 5.58737 5.71219 5.73135 5.84036 5.85718 5.89434 5.91357 5.93733 5.97730 6.08423 6.12449 6.16192 6.21044 6.36261 6.40584 6.53692 6.59722 6.65519 6.75500 6.76330 7.00520 7.09663 7.16228 7.29371 7.46692 7.53585 7.92904 8.23230 8.31928 8.65567 9.13176 9.67978 11.15193 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.004303 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.674995 B = 6505.258839 C = 6982.369246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.091 3.909 3 C -0.184 4.184 4 N -0.530 5.530 5 C 0.185 3.815 6 C -0.495 4.495 7 H 0.069 0.931 8 C 0.051 3.949 9 N -0.902 5.902 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.054 3.946 15 C -0.106 4.106 16 C 0.089 3.911 17 H 0.035 0.965 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.116 4.116 21 C 0.056 3.944 22 N -0.538 5.538 23 C 0.023 3.977 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.028 0.972 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.008 0.992 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.182 -6.582 11.371 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.018 4.018 3 C -0.243 4.243 4 N -0.254 5.254 5 C 0.060 3.940 6 C -0.534 4.534 7 H 0.087 0.913 8 C -0.149 4.149 9 N -0.543 5.543 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.203 1.203 14 C -0.075 4.075 15 C -0.145 4.145 16 C -0.020 4.020 17 H 0.053 0.947 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.072 4.072 22 N -0.263 5.263 23 C -0.125 4.125 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.750 -7.363 10.991 17.694 hybrid contribution -0.169 1.528 0.067 1.539 sum 11.581 -5.835 11.058 17.042 Atomic orbital electron populations 1.22049 0.94396 1.02815 1.00444 1.21442 0.96288 0.91199 0.92903 1.22470 1.00374 0.99758 1.01691 1.62309 1.10267 1.49259 1.03560 1.19882 0.96734 0.92047 0.85358 1.21300 0.95614 1.24476 1.11980 0.91327 1.24981 0.97880 0.95617 0.96408 1.69951 1.36199 1.28969 1.19136 0.86652 0.85396 0.78200 0.77726 1.20312 1.21559 1.20272 1.22097 0.90699 0.95685 0.98993 1.21671 0.92690 1.00063 1.00038 1.21666 0.96664 0.91509 0.92121 0.94718 1.21683 0.94421 1.02588 0.96447 1.21600 0.96917 0.98714 0.98775 1.21581 0.99249 0.99642 0.94938 1.22075 0.87928 0.99538 0.97650 1.61914 1.08582 1.46177 1.09597 1.22393 1.00190 0.98938 0.90941 0.92673 0.89390 0.95328 0.92663 0.93732 0.93764 0.90932 0.97476 0.96163 0.93090 0.91455 0.95939 0.92047 0.90696 0.90896 0.91016 0.91869 0.92562 0.91092 0.91958 0.91123 0.95381 0.90607 0.91955 0.95900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 7.80 37.16 0.29 -2.47 16 2 C 0.09 1.73 2.83 -67.71 -0.19 1.54 16 3 C -0.18 -3.39 8.41 37.16 0.31 -3.08 16 4 N -0.53 -11.19 4.38 -228.08 -1.00 -12.19 16 5 C 0.18 4.69 4.52 -4.98 -0.02 4.66 16 6 C -0.49 -13.49 6.71 -34.44 -0.23 -13.72 16 7 H 0.07 1.86 6.06 -52.49 -0.32 1.54 16 8 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 9 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.05 0.97 4.50 -3.83 -0.02 0.96 16 15 C -0.11 -1.62 4.59 -26.73 -0.12 -1.74 16 16 C 0.09 1.17 1.90 -67.73 -0.13 1.05 16 17 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 18 C -0.11 -1.43 5.09 -26.65 -0.14 -1.56 16 19 C -0.12 -1.29 6.00 -26.61 -0.16 -1.45 16 20 C -0.12 -1.13 6.09 -26.66 -0.16 -1.29 16 21 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 22 N -0.54 -6.57 4.75 -234.93 -1.11 -7.69 16 23 C 0.02 0.26 8.88 60.06 0.53 0.79 16 24 H 0.05 1.11 7.51 -51.93 -0.39 0.72 16 25 H 0.09 2.00 5.89 -51.93 -0.31 1.69 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.97 6.58 -51.93 -0.34 0.62 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.78 6.28 -51.93 -0.33 0.45 16 30 H 0.07 1.53 6.31 -51.93 -0.33 1.21 16 31 H 0.01 0.20 5.43 -51.93 -0.28 -0.08 16 32 H 0.02 0.56 7.54 -51.93 -0.39 0.17 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.25 6.24 -51.93 -0.32 0.92 16 35 H 0.02 0.40 6.11 -51.93 -0.32 0.08 16 36 H 0.06 0.93 4.77 -51.93 -0.25 0.68 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.94 6.70 -51.92 -0.35 0.59 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.07 0.65 8.00 -51.93 -0.42 0.24 16 45 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.88 6.56 -51.93 -0.34 0.54 16 47 H 0.06 0.59 7.96 -51.93 -0.41 0.18 16 48 H 0.02 0.25 8.11 -51.93 -0.42 -0.17 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -28.42 347.27 -10.19 -38.61 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.87 Total: -0.30 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.15 Total: -14.40 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -1.38 Total: -45.69 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.42 -10.19 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230202616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.030 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds