Wall clock time and date at job start Mon Mar 30 2020 06:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47129 * 2 1 4 4 N 1.46907 * 109.47027 * 240.00521 * 2 1 3 5 5 C 1.46894 * 111.00043 * 66.29911 * 4 2 1 6 6 C 1.50706 * 109.47192 * 281.56085 * 5 4 2 7 7 H 1.07993 * 119.99966 * 356.93247 * 6 5 4 8 8 C 1.37875 * 119.99941 * 176.93836 * 6 5 4 9 9 N 1.31518 * 120.00083 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46771 * 59.99928 * 10 8 6 12 12 H 1.48499 * 109.46891 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47012 * 300.00249 * 10 8 6 14 14 C 1.46893 * 111.00212 * 190.25526 * 4 2 1 15 15 C 1.53002 * 109.47142 * 76.05236 * 14 4 2 16 16 C 1.52998 * 109.47276 * 185.02539 * 15 14 4 17 17 H 1.09005 * 109.46292 * 55.70420 * 16 15 14 18 18 C 1.53036 * 109.46611 * 295.72815 * 16 15 14 19 19 C 1.53123 * 109.28048 * 180.80334 * 18 16 15 20 20 C 1.53109 * 109.15999 * 57.65439 * 19 18 16 21 21 C 1.53037 * 109.27960 * 302.34487 * 20 19 18 22 22 N 1.46844 * 109.46407 * 175.67087 * 16 15 14 23 23 C 1.46893 * 111.00413 * 305.85798 * 22 16 15 24 24 H 1.08999 * 109.47123 * 171.88544 * 1 2 3 25 25 H 1.08998 * 109.47034 * 51.88088 * 1 2 3 26 26 H 1.09003 * 109.46378 * 291.88238 * 1 2 3 27 27 H 1.09002 * 109.47710 * 120.00304 * 2 1 3 28 28 H 1.09000 * 109.47028 * 66.65932 * 3 2 1 29 29 H 1.09006 * 109.47420 * 186.65707 * 3 2 1 30 30 H 1.09000 * 109.47581 * 306.66057 * 3 2 1 31 31 H 1.09002 * 109.47173 * 41.55841 * 5 4 2 32 32 H 1.09002 * 109.47484 * 161.56259 * 5 4 2 33 33 H 0.97000 * 119.99845 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.47363 * 196.05174 * 14 4 2 35 35 H 1.09000 * 109.47138 * 316.05709 * 14 4 2 36 36 H 1.09000 * 109.47373 * 305.02817 * 15 14 4 37 37 H 1.08999 * 109.46910 * 65.02785 * 15 14 4 38 38 H 1.08995 * 109.50578 * 300.74603 * 18 16 15 39 39 H 1.09009 * 109.50058 * 60.86174 * 18 16 15 40 40 H 1.08999 * 109.51769 * 177.56357 * 19 18 16 41 41 H 1.09000 * 109.51977 * 297.68159 * 19 18 16 42 42 H 1.09002 * 109.50583 * 62.28789 * 20 19 18 43 43 H 1.09007 * 109.50330 * 182.40694 * 20 19 18 44 44 H 1.09002 * 109.46437 * 179.19623 * 21 20 19 45 45 H 1.08996 * 109.46342 * 299.16310 * 21 20 19 46 46 H 1.09006 * 109.46780 * 67.01412 * 23 22 16 47 47 H 1.09001 * 109.47472 * 187.00919 * 23 22 16 48 48 H 1.08996 * 109.47016 * 307.01450 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 1.6754 0.0551 -2.4163 6 6 0.2287 -0.1868 -2.7621 7 1 -0.3613 -0.8700 -2.1692 8 6 -0.3417 0.4639 -3.8355 9 7 0.3767 1.2962 -4.5573 10 14 -2.1348 0.1635 -4.2647 11 1 -2.9905 0.5506 -3.1144 12 1 -2.5029 0.9774 -5.4509 13 1 -2.3364 -1.2758 -4.5693 14 6 3.4674 -0.9271 -1.1178 15 6 3.7425 -2.0891 -0.1612 16 6 5.2527 -2.2529 0.0213 17 1 5.6816 -1.3107 0.3628 18 6 5.8878 -2.6480 -1.3138 19 6 7.3960 -2.8304 -1.1219 20 6 7.6410 -3.8904 -0.0446 21 6 6.9551 -3.4593 1.2538 22 7 5.5145 -3.2990 1.0180 23 6 4.8035 -3.0205 2.2729 24 1 -0.3633 -1.0174 -0.1451 25 1 -0.3633 0.6344 -0.8085 26 1 -0.3632 0.3830 0.9537 27 1 1.8935 -0.5139 0.8899 28 1 1.7772 1.9208 0.9436 29 1 3.1235 1.4449 -0.1191 30 1 1.5827 1.9897 -0.8244 31 1 1.8351 1.1199 -2.2460 32 1 2.3066 -0.2798 -3.2394 33 1 -0.0247 1.7543 -5.3123 34 1 3.8522 -1.1726 -2.1076 35 1 3.9610 -0.0281 -0.7488 36 1 3.2802 -1.8823 0.8040 37 1 3.3249 -3.0070 -0.5749 38 1 5.4497 -3.5831 -1.6626 39 1 5.7067 -1.8639 -2.0491 40 1 7.8461 -3.1539 -2.0604 41 1 7.8406 -1.8847 -0.8117 42 1 7.2304 -4.8451 -0.3734 43 1 8.7124 -3.9941 0.1270 44 1 7.1156 -4.2188 2.0189 45 1 7.3758 -2.5114 1.5894 46 1 3.7292 -3.1034 2.1079 47 1 5.1110 -3.7396 3.0321 48 1 5.0426 -2.0118 2.6097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230202616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:47 Heat of formation + Delta-G solvation = -21.871368 kcal Electronic energy + Delta-G solvation = -22015.025660 eV Core-core repulsion = 19103.613844 eV Total energy + Delta-G solvation = -2911.411815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48339 -39.23515 -34.95227 -34.49392 -34.20621 -31.99238 -30.02285 -28.29628 -27.76172 -27.19649 -24.66822 -24.15792 -23.40911 -21.78105 -20.58038 -20.06633 -18.39425 -17.20874 -16.68877 -16.41563 -16.21979 -16.00456 -15.32865 -15.25530 -14.88437 -14.80081 -14.46711 -14.15883 -13.97540 -13.57134 -13.18964 -13.18448 -13.04862 -12.90538 -12.81395 -12.60550 -12.53723 -12.46567 -12.37924 -12.07909 -11.98459 -11.75742 -11.73799 -11.60025 -11.31178 -11.08361 -11.02061 -10.83893 -10.47948 -9.22738 -8.85214 -8.09960 -6.14412 1.43097 1.45250 1.52585 2.45063 2.91898 3.21333 3.37969 3.80733 3.92603 4.00010 4.11387 4.17706 4.30551 4.32289 4.37357 4.44728 4.50544 4.53766 4.60349 4.64670 4.69580 4.73421 4.82127 4.83853 4.91182 4.97180 5.04395 5.05645 5.09131 5.10313 5.13898 5.19255 5.25448 5.27205 5.33184 5.35507 5.39156 5.51300 5.61038 5.76509 5.80482 6.16909 6.21376 6.23666 6.52971 6.77044 6.98387 7.50492 8.99772 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.004303 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.674995 B = 6505.258839 C = 6982.369246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 C -0.175 4.175 4 N -0.539 5.539 5 C 0.200 3.800 6 C -0.499 4.499 7 H 0.069 0.931 8 C -0.001 4.001 9 N -0.939 5.939 10 Si 0.956 3.044 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.058 3.942 15 C -0.091 4.091 16 C 0.097 3.903 17 H 0.032 0.968 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.113 4.113 21 C 0.054 3.946 22 N -0.549 5.549 23 C 0.023 3.977 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.037 0.963 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.030 0.970 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 -7.509 13.397 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 C -0.233 4.233 4 N -0.263 5.263 5 C 0.074 3.926 6 C -0.537 4.537 7 H 0.087 0.913 8 C -0.198 4.198 9 N -0.581 5.581 10 Si 0.782 3.218 11 H -0.192 1.192 12 H -0.214 1.214 13 H -0.197 1.197 14 C -0.070 4.070 15 C -0.129 4.129 16 C -0.012 4.012 17 H 0.050 0.950 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.151 4.151 21 C -0.073 4.073 22 N -0.274 5.274 23 C -0.125 4.125 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.048 0.952 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.152 -8.304 13.043 19.666 hybrid contribution -0.247 1.802 -0.512 1.889 sum 11.905 -6.502 12.532 18.467 Atomic orbital electron populations 1.21933 0.94766 1.01614 1.00814 1.21576 0.96049 0.91798 0.92700 1.22350 1.00272 0.98969 1.01751 1.62250 1.12413 1.48715 1.02883 1.19529 0.95491 0.91174 0.86383 1.21571 0.96433 1.23957 1.11773 0.91315 1.25795 1.02152 0.95439 0.96418 1.70084 1.38065 1.30170 1.19757 0.85625 0.80374 0.78157 0.77636 1.19195 1.21387 1.19704 1.22101 0.88751 0.96979 0.99218 1.21492 0.94460 0.97848 0.99109 1.21498 0.94876 0.91942 0.92900 0.95002 1.21660 0.96192 1.01525 0.95875 1.21588 0.95079 0.99350 0.99743 1.21581 1.00517 0.98807 0.94195 1.22172 0.86609 1.00139 0.98398 1.61912 1.10078 1.45479 1.09936 1.22421 0.99621 0.99610 0.90838 0.93472 0.92863 0.92129 0.89923 0.90828 0.93326 0.94417 0.99462 0.99356 0.93162 0.92857 0.95487 0.91444 0.92182 0.91930 0.92326 0.91057 0.92293 0.91616 0.89817 0.89544 0.95213 0.91438 0.90141 0.95775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 7.80 71.98 0.56 -4.58 16 2 C 0.09 3.24 2.83 44.91 0.13 3.36 16 3 C -0.17 -6.28 8.41 71.98 0.61 -5.68 16 4 N -0.54 -23.01 4.38 -875.53 -3.83 -26.84 16 5 C 0.20 10.56 4.52 85.56 0.39 10.95 16 6 C -0.50 -27.81 6.71 25.60 0.17 -27.64 16 7 H 0.07 3.76 6.06 -2.91 -0.02 3.74 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.94 -56.84 13.29 21.45 0.28 -56.56 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 14 C 0.06 2.10 4.50 86.31 0.39 2.49 16 15 C -0.09 -2.71 4.59 30.59 0.14 -2.57 16 16 C 0.10 2.46 1.90 44.94 0.09 2.54 16 17 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 18 C -0.11 -2.85 5.09 30.65 0.16 -2.70 16 19 C -0.12 -2.35 6.00 30.67 0.18 -2.17 16 20 C -0.11 -1.93 6.09 30.64 0.19 -1.74 16 21 C 0.05 0.99 5.46 86.32 0.47 1.46 16 22 N -0.55 -12.37 4.75 -897.19 -4.26 -16.63 16 23 C 0.02 0.45 8.88 127.69 1.13 1.59 16 24 H 0.05 1.85 7.51 -2.39 -0.02 1.83 16 25 H 0.05 2.42 5.89 -2.39 -0.01 2.41 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.67 6.58 -2.39 -0.02 2.65 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.67 6.28 -2.38 -0.01 1.66 16 30 H 0.04 1.61 6.31 -2.39 -0.02 1.60 16 31 H -0.01 -0.69 5.43 -2.39 -0.01 -0.70 16 32 H -0.01 -0.68 7.54 -2.39 -0.02 -0.70 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.05 2.06 6.24 -2.39 -0.01 2.04 16 35 H 0.03 0.95 6.11 -2.39 -0.01 0.94 16 36 H 0.07 1.92 4.77 -2.39 -0.01 1.91 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.58 6.70 -2.38 -0.02 1.56 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.31 8.00 -2.39 -0.02 1.29 16 45 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 1.43 6.56 -2.38 -0.02 1.42 16 47 H 0.08 1.29 7.96 -2.39 -0.02 1.27 16 48 H 0.02 0.47 8.11 -2.39 -0.02 0.45 16 Total: -1.00 -62.07 347.27 0.18 -61.89 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.90 Total: 15.70 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 5.06 Total: -24.29 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -7.80 Total: -100.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -62.07 0.18 -61.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230202616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.017 kcal (2) G-P(sol) polarization free energy of solvation -62.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds