Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47536 * 2 1 4 4 N 1.46907 * 109.47118 * 120.00244 * 2 1 3 5 5 C 1.46895 * 111.00219 * 150.17997 * 4 2 1 6 6 C 1.53003 * 109.47196 * 286.69038 * 5 4 2 7 7 C 1.52997 * 109.46982 * 185.42252 * 6 5 4 8 8 C 1.50701 * 109.47101 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00120 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00223 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99792 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47415 * 89.99887 * 12 10 8 14 14 H 1.48503 * 109.46847 * 209.99934 * 12 10 8 15 15 H 1.48502 * 109.47006 * 329.99775 * 12 10 8 16 16 C 1.46902 * 110.99576 * 274.13455 * 4 2 1 17 17 C 1.52994 * 109.47188 * 77.14688 * 16 4 2 18 18 H 1.09006 * 109.46223 * 292.75410 * 17 16 4 19 19 C 1.53034 * 109.45553 * 172.78090 * 17 16 4 20 20 C 1.53119 * 109.27946 * 180.80821 * 19 17 16 21 21 C 1.53118 * 109.16121 * 57.65647 * 20 19 17 22 22 C 1.53043 * 109.27523 * 302.34227 * 21 20 19 23 23 N 1.46843 * 109.52216 * 59.18157 * 22 21 20 24 24 H 1.09005 * 109.46996 * 313.23555 * 1 2 3 25 25 H 1.08997 * 109.47298 * 73.22889 * 1 2 3 26 26 H 1.08993 * 109.47666 * 193.23123 * 1 2 3 27 27 H 1.08998 * 109.46778 * 239.99693 * 2 1 3 28 28 H 1.09002 * 109.47579 * 169.71265 * 3 2 1 29 29 H 1.08997 * 109.47411 * 289.71262 * 3 2 1 30 30 H 1.09000 * 109.47285 * 49.71107 * 3 2 1 31 31 H 1.09001 * 109.46880 * 46.68450 * 5 4 2 32 32 H 1.08997 * 109.47580 * 166.68795 * 5 4 2 33 33 H 1.08999 * 109.46749 * 305.41873 * 6 5 4 34 34 H 1.08994 * 109.47435 * 65.41721 * 6 5 4 35 35 H 1.08999 * 109.47069 * 299.99424 * 7 6 5 36 36 H 1.08994 * 109.47469 * 59.99489 * 7 6 5 37 37 H 0.96998 * 120.00061 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47200 * 317.14358 * 16 4 2 39 39 H 1.08999 * 109.46675 * 197.14035 * 16 4 2 40 40 H 1.09003 * 109.50500 * 300.74951 * 19 17 16 41 41 H 1.09002 * 109.50618 * 60.86677 * 19 17 16 42 42 H 1.09000 * 109.52223 * 297.74714 * 20 19 17 43 43 H 1.09006 * 109.52488 * 177.55647 * 20 19 17 44 44 H 1.08999 * 109.50319 * 182.40865 * 21 20 19 45 45 H 1.08996 * 109.50659 * 62.28271 * 21 20 19 46 46 H 1.09004 * 109.46139 * 179.19930 * 22 21 20 47 47 H 1.08999 * 109.46052 * 299.17296 * 22 21 20 48 48 H 1.00902 * 111.00195 * 62.35493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3169 -1.3330 0.9449 6 6 3.1120 -2.5682 0.0655 7 6 4.4408 -3.3108 -0.0883 8 6 4.2389 -4.5278 -0.9539 9 1 3.2607 -4.7492 -1.3547 10 6 5.3031 -5.3581 -1.2351 11 7 5.1270 -6.4198 -1.9910 12 14 6.9951 -4.9749 -0.5426 13 1 7.1502 -5.6346 0.7788 14 1 8.0366 -5.4794 -1.4731 15 1 7.1435 -3.5059 -0.3829 16 6 2.1019 0.2274 2.3418 17 6 0.7003 0.4644 2.9077 18 1 0.1034 1.0152 2.1807 19 6 0.8034 1.2748 4.2017 20 6 -0.5996 1.4923 4.7751 21 6 -1.2620 0.1323 5.0122 22 6 -1.3053 -0.6450 3.6946 23 7 0.0606 -0.8275 3.1874 24 1 -0.3633 0.7040 0.7487 25 1 -0.3634 0.2965 -0.9839 26 1 -0.3634 -1.0003 0.2352 27 1 1.8932 -0.5139 -0.8900 28 1 3.1145 1.4479 0.1835 29 1 1.8344 1.9005 -0.9674 30 1 1.5347 2.0065 0.7839 31 1 3.9755 -0.6296 0.4355 32 1 3.7667 -1.6317 1.8917 33 1 2.3790 -3.2275 0.5303 34 1 2.7524 -2.2598 -0.9161 35 1 5.1738 -2.6515 -0.5531 36 1 4.8004 -3.6192 0.8933 37 1 5.8756 -7.0041 -2.1885 38 1 2.5267 1.1763 2.0143 39 1 2.7365 -0.2078 3.1137 40 1 1.4116 0.7308 4.9244 41 1 1.2640 2.2400 3.9909 42 1 -1.1961 2.0700 4.0691 43 1 -0.5275 2.0318 5.7196 44 1 -2.2771 0.2812 5.3803 45 1 -0.6863 -0.4297 5.7475 46 1 -1.7636 -1.6196 3.8628 47 1 -1.8926 -0.0888 2.9639 48 1 0.6148 -1.3739 3.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232625880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = -11.363365 kcal Electronic energy + Delta-G solvation = -21805.043688 eV Core-core repulsion = 18894.087534 eV Total energy + Delta-G solvation = -2910.956154 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.66149 -37.75803 -34.06002 -32.21104 -32.10350 -31.66783 -30.24109 -27.39181 -26.84974 -25.09915 -23.35987 -22.35707 -21.67782 -20.53443 -19.98889 -19.02441 -16.67140 -16.19763 -15.61674 -15.35913 -14.82341 -14.64400 -14.35151 -14.07373 -14.05341 -13.37729 -13.29493 -12.92212 -12.61200 -12.40933 -12.34957 -12.27756 -11.90308 -11.80845 -11.55092 -11.37029 -11.23647 -11.12312 -10.91539 -10.80145 -10.69471 -10.57211 -10.54366 -10.18537 -9.79734 -9.54598 -9.45516 -9.07673 -8.46097 -8.13733 -7.79909 -5.96557 -3.93379 3.35407 3.42260 3.46425 4.04174 4.32039 4.51789 4.59303 4.69305 4.78819 4.94382 5.01386 5.19043 5.23733 5.25122 5.33922 5.37557 5.48072 5.53021 5.58860 5.59171 5.72108 5.73828 5.78091 5.79396 5.81171 5.85249 5.89507 5.97088 6.00746 6.09143 6.09738 6.16945 6.33521 6.43647 6.64159 6.71590 6.76540 7.06095 7.14828 7.43104 7.47449 7.52662 7.60557 7.64491 7.89783 8.64381 9.10228 9.66597 11.17230 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025336 B = 0.003892 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.902068 B = 7193.216444 C = 7400.754227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 C -0.179 4.179 4 N -0.509 5.509 5 C 0.054 3.946 6 C -0.092 4.092 7 C -0.013 4.013 8 C -0.515 4.515 9 H 0.072 0.928 10 C 0.064 3.936 11 N -0.906 5.906 12 Si 0.880 3.120 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.267 1.267 16 C 0.050 3.950 17 C 0.090 3.910 18 H 0.087 0.913 19 C -0.156 4.156 20 C -0.116 4.116 21 C -0.160 4.160 22 C 0.058 3.942 23 N -0.653 5.653 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.009 0.991 37 H 0.262 0.738 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 18.643 12.636 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.035 4.035 3 C -0.237 4.237 4 N -0.232 5.232 5 C -0.074 4.074 6 C -0.130 4.130 7 C -0.051 4.051 8 C -0.553 4.553 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.546 5.546 12 Si 0.708 3.292 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.079 4.079 17 C -0.021 4.021 18 H 0.105 0.895 19 C -0.196 4.196 20 C -0.154 4.154 21 C -0.199 4.199 22 C -0.072 4.072 23 N -0.281 5.281 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.086 0.914 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.477 17.999 11.998 24.488 hybrid contribution 1.786 1.111 1.128 2.387 sum -9.690 19.110 13.126 25.128 Atomic orbital electron populations 1.21920 0.94474 1.03077 0.99653 1.21727 0.96087 0.91799 0.93870 1.22452 1.00900 0.98740 1.01639 1.62145 1.27340 1.30168 1.03504 1.22338 0.88591 0.96457 0.99976 1.21417 0.99599 0.94408 0.97619 1.19555 0.93383 0.95840 0.96348 1.21176 0.97306 1.06910 1.29871 0.91023 1.25042 0.98900 0.94854 0.94852 1.69921 1.31646 1.14734 1.38279 0.86776 0.84411 0.79090 0.78963 1.20367 1.21530 1.19133 1.22331 0.95628 0.95981 0.93965 1.21789 0.95604 0.89952 0.94731 0.89542 1.22328 0.97039 1.01204 0.99028 1.21514 0.96205 0.97154 1.00543 1.22311 1.00801 0.97088 0.99738 1.22022 0.91945 0.99661 0.93620 1.60466 1.02203 1.15797 1.49629 0.93084 0.93865 0.90931 0.90068 0.92926 0.92572 0.92550 0.95835 0.91767 0.91809 0.93214 0.97102 0.97244 0.92875 0.93455 0.91785 0.92080 0.91882 0.92123 0.92435 0.91947 0.92187 0.90927 0.91384 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.83 37.15 0.33 -1.31 16 2 C 0.07 0.98 2.68 -67.72 -0.18 0.80 16 3 C -0.18 -2.02 7.76 37.15 0.29 -1.73 16 4 N -0.51 -7.18 3.95 -226.66 -0.90 -8.07 16 5 C 0.05 0.89 4.88 -3.83 -0.02 0.88 16 6 C -0.09 -1.90 5.16 -26.73 -0.14 -2.04 16 7 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 8 C -0.51 -15.11 9.66 -34.44 -0.33 -15.44 16 9 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 10 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 11 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 12 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 15 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 16 C 0.05 0.58 4.16 -3.83 -0.02 0.56 16 17 C 0.09 0.91 1.79 -67.73 -0.12 0.79 16 18 H 0.09 0.93 4.64 -51.93 -0.24 0.69 16 19 C -0.16 -1.35 5.35 -26.65 -0.14 -1.49 16 20 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 21 C -0.16 -1.27 6.08 -26.65 -0.16 -1.43 16 22 C 0.06 0.53 6.55 -3.83 -0.03 0.50 16 23 N -0.65 -7.08 6.17 -106.76 -0.66 -7.74 16 24 H 0.05 0.57 5.02 -51.93 -0.26 0.31 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.24 6.35 -51.93 -0.33 0.91 16 28 H 0.05 0.63 7.17 -51.93 -0.37 0.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.58 6.14 -51.93 -0.32 0.26 16 31 H 0.02 0.39 7.52 -51.93 -0.39 0.00 16 32 H 0.06 1.06 7.64 -51.93 -0.40 0.66 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.05 1.04 6.81 -51.93 -0.35 0.68 16 35 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 36 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.05 0.53 5.13 -51.93 -0.27 0.26 16 39 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.34 3.75 8.79 -39.29 -0.35 3.41 16 LS Contribution 352.29 15.07 5.31 5.31 Total: -1.00 -30.33 352.29 -10.13 -40.45 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -9.10 Total: -0.06 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -0.89 Total: -19.62 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.78 Total: -43.65 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.33 -10.13 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232625880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.090 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds