Wall clock time and date at job start Mon Mar 30 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47536 * 2 1 4 4 N 1.46907 * 109.47118 * 120.00244 * 2 1 3 5 5 C 1.46895 * 111.00219 * 150.17997 * 4 2 1 6 6 C 1.53003 * 109.47196 * 286.69038 * 5 4 2 7 7 C 1.52997 * 109.46982 * 185.42252 * 6 5 4 8 8 C 1.50701 * 109.47101 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00120 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00337 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00223 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99792 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47415 * 89.99887 * 12 10 8 14 14 H 1.48503 * 109.46847 * 209.99934 * 12 10 8 15 15 H 1.48502 * 109.47006 * 329.99775 * 12 10 8 16 16 C 1.46902 * 110.99576 * 274.13455 * 4 2 1 17 17 C 1.52994 * 109.47188 * 77.14688 * 16 4 2 18 18 H 1.09006 * 109.46223 * 292.75410 * 17 16 4 19 19 C 1.53034 * 109.45553 * 172.78090 * 17 16 4 20 20 C 1.53119 * 109.27946 * 180.80821 * 19 17 16 21 21 C 1.53118 * 109.16121 * 57.65647 * 20 19 17 22 22 C 1.53043 * 109.27523 * 302.34227 * 21 20 19 23 23 N 1.46843 * 109.52216 * 59.18157 * 22 21 20 24 24 H 1.09005 * 109.46996 * 313.23555 * 1 2 3 25 25 H 1.08997 * 109.47298 * 73.22889 * 1 2 3 26 26 H 1.08993 * 109.47666 * 193.23123 * 1 2 3 27 27 H 1.08998 * 109.46778 * 239.99693 * 2 1 3 28 28 H 1.09002 * 109.47579 * 169.71265 * 3 2 1 29 29 H 1.08997 * 109.47411 * 289.71262 * 3 2 1 30 30 H 1.09000 * 109.47285 * 49.71107 * 3 2 1 31 31 H 1.09001 * 109.46880 * 46.68450 * 5 4 2 32 32 H 1.08997 * 109.47580 * 166.68795 * 5 4 2 33 33 H 1.08999 * 109.46749 * 305.41873 * 6 5 4 34 34 H 1.08994 * 109.47435 * 65.41721 * 6 5 4 35 35 H 1.08999 * 109.47069 * 299.99424 * 7 6 5 36 36 H 1.08994 * 109.47469 * 59.99489 * 7 6 5 37 37 H 0.96998 * 120.00061 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47200 * 317.14358 * 16 4 2 39 39 H 1.08999 * 109.46675 * 197.14035 * 16 4 2 40 40 H 1.09003 * 109.50500 * 300.74951 * 19 17 16 41 41 H 1.09002 * 109.50618 * 60.86677 * 19 17 16 42 42 H 1.09000 * 109.52223 * 297.74714 * 20 19 17 43 43 H 1.09006 * 109.52488 * 177.55647 * 20 19 17 44 44 H 1.08999 * 109.50319 * 182.40865 * 21 20 19 45 45 H 1.08996 * 109.50659 * 62.28271 * 21 20 19 46 46 H 1.09004 * 109.46139 * 179.19930 * 22 21 20 47 47 H 1.08999 * 109.46052 * 299.17296 * 22 21 20 48 48 H 1.00902 * 111.00195 * 62.35493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 3.3169 -1.3330 0.9449 6 6 3.1120 -2.5682 0.0655 7 6 4.4408 -3.3108 -0.0883 8 6 4.2389 -4.5278 -0.9539 9 1 3.2607 -4.7492 -1.3547 10 6 5.3031 -5.3581 -1.2351 11 7 5.1270 -6.4198 -1.9910 12 14 6.9951 -4.9749 -0.5426 13 1 7.1502 -5.6346 0.7788 14 1 8.0366 -5.4794 -1.4731 15 1 7.1435 -3.5059 -0.3829 16 6 2.1019 0.2274 2.3418 17 6 0.7003 0.4644 2.9077 18 1 0.1034 1.0152 2.1807 19 6 0.8034 1.2748 4.2017 20 6 -0.5996 1.4923 4.7751 21 6 -1.2620 0.1323 5.0122 22 6 -1.3053 -0.6450 3.6946 23 7 0.0606 -0.8275 3.1874 24 1 -0.3633 0.7040 0.7487 25 1 -0.3634 0.2965 -0.9839 26 1 -0.3634 -1.0003 0.2352 27 1 1.8932 -0.5139 -0.8900 28 1 3.1145 1.4479 0.1835 29 1 1.8344 1.9005 -0.9674 30 1 1.5347 2.0065 0.7839 31 1 3.9755 -0.6296 0.4355 32 1 3.7667 -1.6317 1.8917 33 1 2.3790 -3.2275 0.5303 34 1 2.7524 -2.2598 -0.9161 35 1 5.1738 -2.6515 -0.5531 36 1 4.8004 -3.6192 0.8933 37 1 5.8756 -7.0041 -2.1885 38 1 2.5267 1.1763 2.0143 39 1 2.7365 -0.2078 3.1137 40 1 1.4116 0.7308 4.9244 41 1 1.2640 2.2400 3.9909 42 1 -1.1961 2.0700 4.0691 43 1 -0.5275 2.0318 5.7196 44 1 -2.2771 0.2812 5.3803 45 1 -0.6863 -0.4297 5.7475 46 1 -1.7636 -1.6196 3.8628 47 1 -1.8926 -0.0888 2.9639 48 1 0.6148 -1.3739 3.8296 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232625880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:59 Heat of formation + Delta-G solvation = -30.796699 kcal Electronic energy + Delta-G solvation = -21805.886381 eV Core-core repulsion = 18894.087534 eV Total energy + Delta-G solvation = -2911.798847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56712 -38.71433 -35.90872 -34.02147 -33.04611 -32.40879 -31.63329 -28.74065 -27.97336 -26.33871 -24.20227 -23.83488 -22.69267 -21.62092 -21.26488 -20.14623 -18.84668 -17.24989 -16.61651 -16.40934 -16.12379 -15.77053 -15.42301 -15.33325 -15.05519 -14.76481 -14.47959 -14.32583 -13.77919 -13.65717 -13.37617 -13.31883 -13.15173 -13.01009 -12.73734 -12.62010 -12.29333 -12.17907 -12.07251 -12.04962 -11.83048 -11.71805 -11.61358 -11.49026 -11.30474 -11.29016 -11.05846 -11.01850 -10.73749 -8.91695 -8.89612 -8.27367 -6.31325 1.36402 1.38711 1.51004 2.38028 3.00544 3.07719 3.52015 3.84846 3.98257 4.01944 4.11090 4.17566 4.28827 4.32529 4.37122 4.44512 4.48871 4.56310 4.62705 4.75959 4.77097 4.80200 4.82547 4.89265 4.94571 4.96492 4.98682 5.04422 5.07279 5.11723 5.14808 5.17961 5.20239 5.23067 5.27025 5.40128 5.48675 5.58513 5.64880 5.69553 5.70573 6.29882 6.32797 6.40968 6.54373 6.71465 6.77202 7.32949 8.89955 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.025336 B = 0.003892 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.902068 B = 7193.216444 C = 7400.754227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.070 3.930 3 C -0.171 4.171 4 N -0.517 5.517 5 C 0.067 3.933 6 C -0.081 4.081 7 C -0.008 4.008 8 C -0.531 4.531 9 H 0.026 0.974 10 C 0.000 4.000 11 N -0.954 5.954 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.246 1.246 16 C 0.050 3.950 17 C 0.097 3.903 18 H 0.084 0.916 19 C -0.150 4.150 20 C -0.115 4.115 21 C -0.154 4.154 22 C 0.060 3.940 23 N -0.670 5.670 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.017 0.983 36 H 0.018 0.982 37 H 0.266 0.734 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 21.143 14.474 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.038 4.038 3 C -0.229 4.229 4 N -0.240 5.240 5 C -0.061 4.061 6 C -0.119 4.119 7 C -0.046 4.046 8 C -0.569 4.569 9 H 0.045 0.955 10 C -0.196 4.196 11 N -0.595 5.595 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.169 1.169 16 C -0.078 4.078 17 C -0.013 4.013 18 H 0.101 0.899 19 C -0.190 4.190 20 C -0.152 4.152 21 C -0.193 4.193 22 C -0.070 4.070 23 N -0.299 5.299 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.717 20.524 13.846 26.977 hybrid contribution 1.418 0.270 0.490 1.525 sum -9.298 20.794 14.336 26.914 Atomic orbital electron populations 1.21818 0.93670 1.02071 1.00603 1.21739 0.96681 0.92888 0.92540 1.22360 1.00616 0.97176 1.02752 1.62074 1.25781 1.31569 1.04609 1.22052 0.90029 0.94831 0.99188 1.21211 0.97048 0.95688 0.97934 1.19485 0.95484 0.94155 0.95494 1.21522 0.95663 1.09099 1.30659 0.95528 1.26081 1.03973 0.94416 0.95098 1.70084 1.33375 1.16132 1.39940 0.85585 0.78017 0.80099 0.78476 1.19024 1.20939 1.16950 1.22405 0.96801 0.95747 0.92806 1.21685 0.94418 0.89827 0.95392 0.89863 1.22259 0.97600 1.01204 0.97969 1.21509 0.95669 0.97054 1.00995 1.22237 1.01377 0.96944 0.98773 1.21993 0.91005 0.99755 0.94263 1.60465 1.02921 1.16394 1.50079 0.91673 0.92991 0.93239 0.92659 0.93324 0.91727 0.91006 0.95366 0.91138 0.93648 0.94386 0.96482 0.96337 0.92535 0.92344 0.91821 0.92275 0.91002 0.91909 0.91538 0.91021 0.92422 0.91251 0.91627 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.83 71.98 0.64 -2.30 16 2 C 0.07 1.81 2.68 44.91 0.12 1.93 16 3 C -0.17 -3.48 7.76 71.98 0.56 -2.92 16 4 N -0.52 -14.10 3.95 -871.01 -3.44 -17.55 16 5 C 0.07 2.16 4.88 86.31 0.42 2.58 16 6 C -0.08 -3.37 5.16 30.59 0.16 -3.21 16 7 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 8 C -0.53 -32.14 9.66 25.60 0.25 -31.89 16 9 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 10 C 0.00 0.03 5.47 84.65 0.46 0.49 16 11 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 12 Si 0.96 45.43 27.47 68.60 1.88 47.32 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 15 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 16 C 0.05 1.07 4.16 86.30 0.36 1.43 16 17 C 0.10 1.77 1.79 44.93 0.08 1.85 16 18 H 0.08 1.58 4.64 -2.38 -0.01 1.57 16 19 C -0.15 -2.21 5.35 30.65 0.16 -2.04 16 20 C -0.11 -1.52 6.00 30.67 0.18 -1.34 16 21 C -0.15 -2.15 6.08 30.65 0.19 -1.96 16 22 C 0.06 1.03 6.55 86.33 0.57 1.59 16 23 N -0.67 -13.85 6.17 -491.68 -3.04 -16.88 16 24 H 0.06 1.34 5.02 -2.38 -0.01 1.33 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.71 6.35 -2.39 -0.02 1.69 16 28 H 0.05 1.04 7.17 -2.39 -0.02 1.02 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.24 6.14 -2.39 -0.01 1.23 16 31 H 0.03 0.89 7.52 -2.39 -0.02 0.87 16 32 H 0.07 2.19 7.64 -2.39 -0.02 2.17 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 1.64 6.81 -2.39 -0.02 1.63 16 35 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 36 H 0.02 0.86 7.57 -2.39 -0.02 0.85 16 37 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.06 1.13 5.13 -2.39 -0.01 1.12 16 39 H 0.06 1.37 7.60 -2.39 -0.02 1.35 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.34 7.16 8.79 -89.69 -0.79 6.37 16 Total: -1.00 -66.65 352.29 0.03 -66.62 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.06 Total: 18.07 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.26 Total: -36.07 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -6.18 Total: -95.94 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -66.65 0.03 -66.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232625880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.824 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds