Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 N 1.46900 * 109.47247 * 180.78121 * 3 2 1 5 5 C 1.46900 * 110.99751 * 195.86058 * 4 3 2 6 6 C 1.52999 * 109.47252 * 66.04878 * 5 4 3 7 7 C 1.52997 * 109.47077 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47272 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99600 * 359.72116 * 8 7 6 10 10 C 1.37876 * 120.00434 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00049 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99754 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46907 * 90.00348 * 12 10 8 14 14 H 1.48498 * 109.47130 * 210.00163 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00619 * 12 10 8 16 16 C 1.46895 * 110.99801 * 71.90909 * 4 3 2 17 17 C 1.53004 * 109.47308 * 199.85082 * 16 4 3 18 18 H 1.09006 * 109.46142 * 296.51481 * 17 16 4 19 19 C 1.53031 * 109.46286 * 176.54575 * 17 16 4 20 20 C 1.53120 * 109.27484 * 180.80620 * 19 17 16 21 21 C 1.53115 * 109.16395 * 57.65280 * 20 19 17 22 22 C 1.53032 * 109.27944 * 302.34762 * 21 20 19 23 23 N 1.46845 * 109.45754 * 56.49014 * 17 16 4 24 24 H 1.08994 * 109.47248 * 299.99263 * 1 2 3 25 25 H 1.08993 * 109.47699 * 60.00032 * 1 2 3 26 26 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46884 * 240.00396 * 2 1 3 28 28 H 1.08993 * 109.47699 * 119.99967 * 2 1 3 29 29 H 1.09003 * 109.47149 * 60.77964 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.78869 * 3 2 1 31 31 H 1.09002 * 109.47416 * 306.04411 * 5 4 3 32 32 H 1.09006 * 109.46857 * 186.04341 * 5 4 3 33 33 H 1.09002 * 109.47291 * 59.99457 * 6 5 4 34 34 H 1.08998 * 109.46907 * 299.99802 * 6 5 4 35 35 H 1.08999 * 109.47515 * 60.00196 * 7 6 5 36 36 H 1.08998 * 109.47370 * 299.99861 * 7 6 5 37 37 H 0.96995 * 119.99507 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47557 * 319.85246 * 16 4 3 39 39 H 1.09004 * 109.47188 * 79.85501 * 16 4 3 40 40 H 1.08997 * 109.50611 * 300.74096 * 19 17 16 41 41 H 1.09003 * 109.50529 * 60.86860 * 19 17 16 42 42 H 1.08999 * 109.52437 * 297.74640 * 20 19 17 43 43 H 1.09007 * 109.57447 * 177.59173 * 20 19 17 44 44 H 1.08995 * 109.50689 * 182.40434 * 21 20 19 45 45 H 1.09000 * 109.53255 * 62.30718 * 21 20 19 46 46 H 1.09004 * 109.46360 * 299.16348 * 22 21 20 47 47 H 1.09005 * 109.46324 * 179.19268 * 22 21 20 48 48 H 1.00904 * 111.00216 * 57.66948 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 -0.0189 5 6 4.0400 2.7602 0.3551 6 6 3.6947 3.0532 1.8166 7 6 4.2485 4.4251 2.2063 8 6 3.9090 4.7135 3.6460 9 1 3.3499 3.9923 4.2238 10 6 4.3067 5.9005 4.2238 11 7 4.0100 6.1522 5.4800 12 14 5.2670 7.1511 3.2221 13 1 4.3215 8.0808 2.5535 14 1 6.1653 7.9201 4.1203 15 1 6.0772 6.4467 2.1962 16 6 4.0184 1.0228 -1.3311 17 6 5.4699 0.5596 -1.1902 18 1 6.0889 1.3975 -0.8692 19 6 5.9731 0.0417 -2.5394 20 6 7.4190 -0.4392 -2.3889 21 6 7.4781 -1.5241 -1.3100 22 6 6.9312 -0.9608 0.0035 23 7 5.5457 -0.5152 -0.1926 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6881 1.9523 0.8969 30 1 1.6651 1.9604 -0.8829 31 1 3.5973 3.5250 -0.2831 32 1 5.1228 2.7644 0.2297 33 1 4.1374 2.2884 2.4548 34 1 2.6120 3.0489 1.9420 35 1 3.8062 5.1901 1.5681 36 1 5.3312 4.4290 2.0809 37 1 4.2901 6.9872 5.8865 38 1 3.4105 0.2019 -1.7113 39 1 3.9706 1.8621 -2.0250 40 1 5.3463 -0.7874 -2.8677 41 1 5.9313 0.8442 -3.2759 42 1 8.0531 0.3985 -2.0983 43 1 7.7683 -0.8486 -3.3368 44 1 8.5115 -1.8403 -1.1681 45 1 6.8754 -2.3782 -1.6187 46 1 7.5432 -0.1157 0.3191 47 1 6.9586 -1.7352 0.7702 48 1 4.9500 -1.2885 -0.4481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233040861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = -26.676835 kcal Electronic energy + Delta-G solvation = -21460.446474 eV Core-core repulsion = 18548.826279 eV Total energy + Delta-G solvation = -2911.620196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.33365 -37.48500 -34.04034 -33.18146 -32.02179 -31.65398 -30.67767 -27.23272 -26.56777 -24.30606 -23.35646 -22.09999 -21.45299 -20.45860 -20.27792 -19.66996 -16.63940 -15.96802 -15.47429 -15.27975 -14.98270 -14.64225 -14.43667 -14.26096 -14.06034 -13.86132 -13.25901 -13.00562 -12.61521 -12.50364 -12.38211 -12.06095 -11.86021 -11.72884 -11.63149 -11.47601 -11.23513 -11.18037 -10.92348 -10.84804 -10.76683 -10.57425 -10.34700 -10.28865 -9.84188 -9.51232 -9.44788 -9.06783 -8.46121 -8.14657 -7.87030 -5.96723 -3.93502 3.35149 3.42251 3.46815 4.03649 4.30554 4.51808 4.62319 4.70879 4.81080 4.94664 5.11267 5.14340 5.18630 5.28474 5.34474 5.37582 5.45436 5.50433 5.57446 5.62800 5.65917 5.72473 5.78924 5.80944 5.83805 5.85137 5.90342 5.94821 6.05247 6.06093 6.12305 6.16940 6.31321 6.36584 6.42513 6.71586 6.73170 7.04247 7.14254 7.41437 7.46680 7.50165 7.58487 7.61217 7.89491 8.64100 9.09845 9.66516 11.17071 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004722 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.068879 B = 5927.770112 C = 7193.071886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.050 3.950 4 N -0.516 5.516 5 C 0.058 3.942 6 C -0.095 4.095 7 C -0.013 4.013 8 C -0.514 4.514 9 H 0.072 0.928 10 C 0.065 3.935 11 N -0.906 5.906 12 Si 0.879 3.121 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.060 3.940 17 C 0.095 3.905 18 H 0.080 0.920 19 C -0.153 4.153 20 C -0.118 4.118 21 C -0.159 4.159 22 C 0.057 3.943 23 N -0.654 5.654 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.023 0.977 31 H 0.021 0.979 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.006 0.994 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -15.591 -18.024 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.078 4.078 4 N -0.239 5.239 5 C -0.070 4.070 6 C -0.133 4.133 7 C -0.051 4.051 8 C -0.553 4.553 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.546 5.546 12 Si 0.707 3.293 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.069 4.069 17 C -0.016 4.016 18 H 0.098 0.902 19 C -0.193 4.193 20 C -0.156 4.156 21 C -0.198 4.198 22 C -0.073 4.073 23 N -0.282 5.282 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.973 -15.349 -16.974 22.970 hybrid contribution 0.448 0.893 -1.968 2.207 sum 2.421 -14.457 -18.942 23.951 Atomic orbital electron populations 1.21752 0.96240 1.01252 1.01732 1.21480 0.94640 0.96889 1.02249 1.22228 0.87904 0.96658 1.01046 1.61906 1.06728 1.28537 1.26776 1.22279 0.99425 0.87217 0.98053 1.21450 1.00220 0.98953 0.92643 1.19552 0.95939 0.92558 0.97061 1.21171 1.35399 1.03697 0.94990 0.91033 1.25035 0.95720 0.98053 0.94781 1.69923 1.47375 1.25035 1.12241 0.86784 0.80502 0.81625 0.80395 1.20448 1.21477 1.19063 1.22146 0.94996 0.99064 0.90666 1.21567 0.96240 0.95002 0.88805 0.90158 1.22288 0.96696 1.01066 0.99260 1.21527 0.96690 0.98723 0.98632 1.22299 1.01669 0.98286 0.97572 1.22038 0.90018 0.99973 0.95303 1.60459 1.07409 1.12493 1.47821 0.92474 0.93280 0.92967 0.92815 0.90939 0.89874 0.95874 0.96106 0.91437 0.91778 0.93088 0.97544 0.96773 0.92874 0.91326 0.94910 0.92174 0.91724 0.91876 0.92378 0.91827 0.92326 0.91002 0.90882 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.11 -1.31 6.01 -26.73 -0.16 -1.47 16 3 C 0.05 0.67 4.83 -3.83 -0.02 0.66 16 4 N -0.52 -7.47 4.15 -234.62 -0.97 -8.44 16 5 C 0.06 0.98 4.78 -3.82 -0.02 0.96 16 6 C -0.09 -1.97 5.12 -26.73 -0.14 -2.11 16 7 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 8 C -0.51 -15.14 9.66 -34.44 -0.33 -15.48 16 9 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 10 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 11 N -0.91 -28.63 13.96 55.43 0.77 -27.86 16 12 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 16 C 0.06 0.71 4.46 -3.82 -0.02 0.70 16 17 C 0.09 1.07 2.45 -67.73 -0.17 0.90 16 18 H 0.08 1.06 6.91 -51.93 -0.36 0.71 16 19 C -0.15 -1.40 5.36 -26.65 -0.14 -1.54 16 20 C -0.12 -1.03 6.00 -26.61 -0.16 -1.19 16 21 C -0.16 -1.35 6.08 -26.66 -0.16 -1.51 16 22 C 0.06 0.58 6.55 -3.83 -0.03 0.56 16 23 N -0.65 -7.53 6.26 -106.76 -0.67 -8.20 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.57 6.51 -51.93 -0.34 0.23 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.28 5.94 -51.93 -0.31 0.97 16 30 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 31 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 1.16 6.70 -51.93 -0.35 0.81 16 33 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.05 1.06 6.28 -51.93 -0.33 0.73 16 35 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.07 0.74 6.23 -51.93 -0.32 0.41 16 39 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.33 3.51 8.79 -39.29 -0.35 3.17 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -30.65 361.77 -10.72 -41.37 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -9.45 Total: -0.66 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.18 Total: -19.31 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.87 Total: -44.50 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.65 -10.72 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233040861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.696 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds