Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 N 1.46900 * 109.47247 * 180.78121 * 3 2 1 5 5 C 1.46900 * 110.99751 * 195.86058 * 4 3 2 6 6 C 1.52999 * 109.47252 * 66.04878 * 5 4 3 7 7 C 1.52997 * 109.47077 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47272 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99600 * 359.72116 * 8 7 6 10 10 C 1.37876 * 120.00434 * 180.02562 * 8 7 6 11 11 N 1.31516 * 120.00049 * 179.97438 * 10 8 7 12 12 Si 1.86804 * 119.99754 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46907 * 90.00348 * 12 10 8 14 14 H 1.48498 * 109.47130 * 210.00163 * 12 10 8 15 15 H 1.48501 * 109.47263 * 330.00619 * 12 10 8 16 16 C 1.46895 * 110.99801 * 71.90909 * 4 3 2 17 17 C 1.53004 * 109.47308 * 199.85082 * 16 4 3 18 18 H 1.09006 * 109.46142 * 296.51481 * 17 16 4 19 19 C 1.53031 * 109.46286 * 176.54575 * 17 16 4 20 20 C 1.53120 * 109.27484 * 180.80620 * 19 17 16 21 21 C 1.53115 * 109.16395 * 57.65280 * 20 19 17 22 22 C 1.53032 * 109.27944 * 302.34762 * 21 20 19 23 23 N 1.46845 * 109.45754 * 56.49014 * 17 16 4 24 24 H 1.08994 * 109.47248 * 299.99263 * 1 2 3 25 25 H 1.08993 * 109.47699 * 60.00032 * 1 2 3 26 26 H 1.09002 * 109.46804 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46884 * 240.00396 * 2 1 3 28 28 H 1.08993 * 109.47699 * 119.99967 * 2 1 3 29 29 H 1.09003 * 109.47149 * 60.77964 * 3 2 1 30 30 H 1.09004 * 109.47224 * 300.78869 * 3 2 1 31 31 H 1.09002 * 109.47416 * 306.04411 * 5 4 3 32 32 H 1.09006 * 109.46857 * 186.04341 * 5 4 3 33 33 H 1.09002 * 109.47291 * 59.99457 * 6 5 4 34 34 H 1.08998 * 109.46907 * 299.99802 * 6 5 4 35 35 H 1.08999 * 109.47515 * 60.00196 * 7 6 5 36 36 H 1.08998 * 109.47370 * 299.99861 * 7 6 5 37 37 H 0.96995 * 119.99507 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.47557 * 319.85246 * 16 4 3 39 39 H 1.09004 * 109.47188 * 79.85501 * 16 4 3 40 40 H 1.08997 * 109.50611 * 300.74096 * 19 17 16 41 41 H 1.09003 * 109.50529 * 60.86860 * 19 17 16 42 42 H 1.08999 * 109.52437 * 297.74640 * 20 19 17 43 43 H 1.09007 * 109.57447 * 177.59173 * 20 19 17 44 44 H 1.08995 * 109.50689 * 182.40434 * 21 20 19 45 45 H 1.09000 * 109.53255 * 62.30718 * 21 20 19 46 46 H 1.09004 * 109.46360 * 299.16348 * 22 21 20 47 47 H 1.09005 * 109.46324 * 179.19268 * 22 21 20 48 48 H 1.00904 * 111.00216 * 57.66948 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5088 1.4426 -0.0189 5 6 4.0400 2.7602 0.3551 6 6 3.6947 3.0532 1.8166 7 6 4.2485 4.4251 2.2063 8 6 3.9090 4.7135 3.6460 9 1 3.3499 3.9923 4.2238 10 6 4.3067 5.9005 4.2238 11 7 4.0100 6.1522 5.4800 12 14 5.2670 7.1511 3.2221 13 1 4.3215 8.0808 2.5535 14 1 6.1653 7.9201 4.1203 15 1 6.0772 6.4467 2.1962 16 6 4.0184 1.0228 -1.3311 17 6 5.4699 0.5596 -1.1902 18 1 6.0889 1.3975 -0.8692 19 6 5.9731 0.0417 -2.5394 20 6 7.4190 -0.4392 -2.3889 21 6 7.4781 -1.5241 -1.3100 22 6 6.9312 -0.9608 0.0035 23 7 5.5457 -0.5152 -0.1926 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6881 1.9523 0.8969 30 1 1.6651 1.9604 -0.8829 31 1 3.5973 3.5250 -0.2831 32 1 5.1228 2.7644 0.2297 33 1 4.1374 2.2884 2.4548 34 1 2.6120 3.0489 1.9420 35 1 3.8062 5.1901 1.5681 36 1 5.3312 4.4290 2.0809 37 1 4.2901 6.9872 5.8865 38 1 3.4105 0.2019 -1.7113 39 1 3.9706 1.8621 -2.0250 40 1 5.3463 -0.7874 -2.8677 41 1 5.9313 0.8442 -3.2759 42 1 8.0531 0.3985 -2.0983 43 1 7.7683 -0.8486 -3.3368 44 1 8.5115 -1.8403 -1.1681 45 1 6.8754 -2.3782 -1.6187 46 1 7.5432 -0.1157 0.3191 47 1 6.9586 -1.7352 0.7702 48 1 4.9500 -1.2885 -0.4481 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233040861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = -46.136023 kcal Electronic energy + Delta-G solvation = -21461.290288 eV Core-core repulsion = 18548.826279 eV Total energy + Delta-G solvation = -2912.464010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.24369 -38.56543 -35.83269 -34.37186 -33.64591 -32.47769 -31.93263 -28.92954 -27.49551 -25.69158 -24.27280 -23.40414 -22.39701 -21.87678 -21.21433 -20.99619 -18.86929 -16.96980 -16.60076 -16.36219 -16.17023 -15.83211 -15.65422 -15.36666 -15.22688 -15.00245 -14.74466 -14.31516 -13.88408 -13.61514 -13.50444 -13.25930 -13.22674 -12.86718 -12.78098 -12.65116 -12.54701 -12.22308 -12.03334 -11.96161 -11.80965 -11.78901 -11.59554 -11.48752 -11.35772 -11.30410 -11.17487 -11.01834 -10.74778 -9.01891 -8.96693 -8.28443 -6.32321 1.34869 1.37414 1.49873 2.36910 2.97045 3.06615 3.46668 3.80802 3.96514 4.01250 4.10447 4.14832 4.20987 4.28027 4.35966 4.44309 4.50722 4.54288 4.60648 4.66384 4.68852 4.75849 4.79296 4.84332 4.92003 4.93927 4.97607 5.01033 5.06313 5.12195 5.13639 5.17462 5.19652 5.22208 5.26493 5.41374 5.42419 5.50485 5.56370 5.65135 5.68719 6.21862 6.28666 6.35402 6.44873 6.73345 6.75768 7.31988 8.88829 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.004722 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.068879 B = 5927.770112 C = 7193.071886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.049 3.951 4 N -0.524 5.524 5 C 0.071 3.929 6 C -0.083 4.083 7 C -0.008 4.008 8 C -0.531 4.531 9 H 0.028 0.972 10 C 0.003 3.997 11 N -0.953 5.953 12 Si 0.953 3.047 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.248 1.248 16 C 0.063 3.937 17 C 0.098 3.902 18 H 0.057 0.943 19 C -0.145 4.145 20 C -0.118 4.118 21 C -0.151 4.151 22 C 0.057 3.943 23 N -0.671 5.671 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -16.115 -21.092 26.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.079 4.079 4 N -0.247 5.247 5 C -0.057 4.057 6 C -0.121 4.121 7 C -0.046 4.046 8 C -0.569 4.569 9 H 0.046 0.954 10 C -0.194 4.194 11 N -0.594 5.594 12 Si 0.776 3.224 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.171 1.171 16 C -0.065 4.065 17 C -0.013 4.013 18 H 0.075 0.925 19 C -0.185 4.185 20 C -0.156 4.156 21 C -0.190 4.190 22 C -0.073 4.073 23 N -0.301 5.301 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.576 -15.899 -20.057 25.724 hybrid contribution 0.198 0.986 -0.914 1.359 sum 2.774 -14.913 -20.971 25.882 Atomic orbital electron populations 1.21732 0.95170 1.02197 1.01604 1.21399 0.95485 0.95195 1.02295 1.22243 0.87416 0.98056 1.00160 1.61852 1.07287 1.26746 1.28863 1.21984 0.99540 0.88967 0.95179 1.21246 0.99383 0.96316 0.95179 1.19480 0.96174 0.94849 0.94104 1.21500 1.35057 1.03130 0.97234 0.95393 1.26049 0.96847 1.00488 0.95982 1.70081 1.48886 1.26070 1.14368 0.85618 0.79182 0.78602 0.78998 1.19003 1.20804 1.17113 1.22210 0.95510 0.99684 0.89124 1.21468 0.95458 0.94334 0.89992 0.92521 1.22200 0.96984 1.01517 0.97804 1.21537 0.96316 0.98479 0.99264 1.22211 1.02128 0.98343 0.96328 1.21997 0.89364 0.99378 0.96529 1.60417 1.08234 1.12976 1.48432 0.93613 0.92416 0.91494 0.91175 0.92369 0.92405 0.95002 0.95617 0.91456 0.93766 0.93743 0.96578 0.96472 0.92505 0.89549 0.94467 0.91022 0.91233 0.92837 0.91016 0.91101 0.91428 0.92791 0.90673 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.11 -2.27 6.01 30.59 0.18 -2.08 16 3 C 0.05 1.29 4.83 86.30 0.42 1.71 16 4 N -0.52 -14.66 4.15 -896.22 -3.72 -18.38 16 5 C 0.07 2.38 4.78 86.30 0.41 2.80 16 6 C -0.08 -3.53 5.12 30.59 0.16 -3.37 16 7 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 8 C -0.53 -32.25 9.66 25.60 0.25 -32.00 16 9 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 10 C 0.00 0.16 5.47 84.65 0.46 0.62 16 11 N -0.95 -61.75 13.96 21.45 0.30 -61.46 16 12 Si 0.95 45.70 27.47 68.60 1.88 47.58 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 15 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 16 C 0.06 1.36 4.46 86.31 0.38 1.74 16 17 C 0.10 2.06 2.45 44.94 0.11 2.17 16 18 H 0.06 1.46 6.91 -2.38 -0.02 1.45 16 19 C -0.15 -2.28 5.36 30.64 0.16 -2.12 16 20 C -0.12 -1.80 6.00 30.67 0.18 -1.62 16 21 C -0.15 -2.26 6.08 30.64 0.19 -2.08 16 22 C 0.06 1.12 6.55 86.32 0.57 1.69 16 23 N -0.67 -14.70 6.26 -491.67 -3.08 -17.78 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.28 6.51 -2.38 -0.02 1.26 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.81 5.94 -2.39 -0.01 1.79 16 30 H 0.03 0.78 8.05 -2.38 -0.02 0.76 16 31 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 32 H 0.07 2.26 6.70 -2.38 -0.02 2.25 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.91 6.28 -2.39 -0.02 1.90 16 35 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 36 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 37 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.09 1.58 6.23 -2.39 -0.01 1.57 16 39 H 0.04 0.79 8.00 -2.38 -0.02 0.77 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.34 6.55 8.79 -89.69 -0.79 5.76 16 Total: -1.00 -67.42 361.77 -0.26 -67.68 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.04 Total: 17.25 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.31 Total: -34.90 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -6.50 Total: -97.61 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -67.42 -0.26 -67.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233040861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.542 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds