Wall clock time and date at job start Mon Mar 30 2020 06:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47657 * 2 1 4 4 N 1.46894 * 109.47628 * 180.78732 * 3 2 1 5 5 C 1.46897 * 111.00175 * 61.59671 * 4 3 2 6 6 C 1.53000 * 109.46723 * 66.05300 * 5 4 3 7 7 C 1.53007 * 109.47003 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46657 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00657 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99679 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99651 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47542 * 60.00122 * 12 10 8 14 14 H 1.48501 * 109.47377 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47117 * 299.99886 * 12 10 8 16 16 C 1.46908 * 110.99834 * 297.64628 * 4 3 2 17 17 C 1.52999 * 109.47193 * 288.22748 * 16 4 3 18 18 H 1.08997 * 109.50219 * 57.07436 * 17 16 4 19 19 C 1.53113 * 109.50375 * 177.19989 * 17 16 4 20 20 C 1.53114 * 109.16433 * 177.59472 * 19 17 16 21 21 C 1.53037 * 109.27559 * 302.34685 * 20 19 17 22 22 N 1.46843 * 109.53028 * 59.17570 * 21 20 19 23 23 C 1.46847 * 111.19464 * 298.26376 * 22 21 20 24 24 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47173 * 300.00363 * 1 2 3 26 26 H 1.08999 * 109.46537 * 60.00163 * 1 2 3 27 27 H 1.09004 * 109.47173 * 239.99637 * 2 1 3 28 28 H 1.09004 * 109.47279 * 120.00313 * 2 1 3 29 29 H 1.09005 * 109.47139 * 60.77895 * 3 2 1 30 30 H 1.09001 * 109.46623 * 300.78780 * 3 2 1 31 31 H 1.08998 * 109.47087 * 186.04772 * 5 4 3 32 32 H 1.08995 * 109.47718 * 306.05338 * 5 4 3 33 33 H 1.09012 * 109.47040 * 299.99503 * 6 5 4 34 34 H 1.08992 * 109.47699 * 59.99785 * 6 5 4 35 35 H 1.08998 * 109.46752 * 299.99438 * 7 6 5 36 36 H 1.08997 * 109.47052 * 59.99991 * 7 6 5 37 37 H 0.96998 * 119.99265 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.46846 * 48.22421 * 16 4 3 39 39 H 1.09003 * 109.47121 * 168.22012 * 16 4 3 40 40 H 1.09005 * 109.52218 * 297.49657 * 19 17 16 41 41 H 1.09001 * 109.52860 * 57.68459 * 19 17 16 42 42 H 1.08996 * 109.50983 * 182.40389 * 20 19 17 43 43 H 1.09000 * 109.53485 * 62.30169 * 20 19 17 44 44 H 1.09006 * 109.45925 * 299.15769 * 21 20 19 45 45 H 1.08998 * 109.46393 * 179.19485 * 21 20 19 46 46 H 1.00904 * 110.99921 * 62.34880 * 22 21 20 47 47 H 1.09004 * 109.46336 * 301.71679 * 23 22 21 48 48 H 1.08999 * 109.46477 * 181.75332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4425 -0.0190 5 6 4.0197 0.7957 -1.2350 6 6 3.6400 1.6347 -2.4568 7 6 4.1714 0.9607 -3.7235 8 6 3.7968 1.7869 -4.9269 9 1 3.2355 2.7009 -4.8010 10 6 4.1707 1.3758 -6.1888 11 7 4.8539 0.2625 -6.3421 12 14 3.7071 2.4001 -7.6804 13 1 4.3006 3.7554 -7.5542 14 1 4.2227 1.7460 -8.9098 15 1 2.2286 2.5129 -7.7633 16 6 4.0511 0.8005 1.1861 17 6 3.8282 1.7127 2.3940 18 1 2.7649 1.9304 2.4943 19 6 4.3298 1.0148 3.6611 20 6 4.1585 1.9573 4.8555 21 6 4.9214 3.2565 4.5873 22 7 4.4043 3.8863 3.3657 23 6 4.6008 3.0190 2.1972 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6883 1.9523 0.8969 30 1 1.6653 1.9603 -0.8829 31 1 5.1049 0.7130 -1.1741 32 1 3.5842 -0.1991 -1.3279 33 1 2.5547 1.7174 -2.5177 34 1 4.0755 2.6295 -2.3641 35 1 5.2565 0.8777 -3.6628 36 1 3.7354 -0.0339 -3.8160 37 1 5.1172 -0.0265 -7.2298 38 1 3.5442 -0.1504 1.3504 39 1 5.1189 0.6251 1.0552 40 1 3.7525 0.1055 3.8290 41 1 5.3837 0.7619 3.5449 42 1 4.5531 1.4823 5.7536 43 1 3.1005 2.1790 4.9960 44 1 5.9815 3.0358 4.4613 45 1 4.7897 3.9356 5.4297 46 1 3.4323 4.1360 3.4712 47 1 5.6623 2.7994 2.0823 48 1 4.2362 3.5254 1.3035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233040979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:25 Heat of formation + Delta-G solvation = -31.007550 kcal Electronic energy + Delta-G solvation = -21385.656714 eV Core-core repulsion = 18473.848724 eV Total energy + Delta-G solvation = -2911.807990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52469 -37.78329 -33.92388 -33.12151 -32.22859 -31.54807 -30.31809 -26.77187 -26.40597 -24.23849 -23.70596 -22.59154 -22.03464 -20.67904 -19.90467 -19.15209 -16.35866 -16.03094 -15.84314 -15.70153 -14.84830 -14.62321 -14.54075 -14.34494 -14.17292 -13.58847 -13.31498 -12.87043 -12.60590 -12.36901 -12.23200 -12.02551 -11.80431 -11.57029 -11.46421 -11.40615 -11.31344 -11.21347 -11.10132 -10.84151 -10.67034 -10.58978 -10.47261 -10.32689 -10.26514 -9.52102 -9.27317 -9.02108 -8.45025 -8.30459 -7.89201 -5.96215 -3.98004 3.36087 3.40058 3.42956 4.10938 4.24116 4.49971 4.56764 4.73527 4.85672 4.87474 5.04691 5.08823 5.16372 5.34660 5.37561 5.39584 5.40981 5.45704 5.53698 5.60528 5.67347 5.71212 5.75677 5.78989 5.89042 5.90210 5.91957 5.96270 6.05961 6.10921 6.15323 6.28154 6.33778 6.40793 6.44685 6.76286 6.84334 6.95818 7.17818 7.29024 7.42006 7.46066 7.72599 7.88251 8.04675 8.48235 9.09137 9.65730 11.15252 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.003628 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.475263 B = 7715.812084 C = 8300.422043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.053 3.947 4 N -0.533 5.533 5 C 0.052 3.948 6 C -0.103 4.103 7 C 0.023 3.977 8 C -0.518 4.518 9 H 0.054 0.946 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.056 3.944 17 C -0.116 4.116 18 H 0.067 0.933 19 C -0.115 4.115 20 C -0.156 4.156 21 C 0.056 3.944 22 N -0.688 5.688 23 C 0.069 3.931 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.260 0.740 38 H 0.036 0.964 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.337 0.663 47 H 0.068 0.932 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 1.113 21.953 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.205 4.205 3 C -0.075 4.075 4 N -0.255 5.255 5 C -0.075 4.075 6 C -0.141 4.141 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.072 0.928 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.072 4.072 17 C -0.136 4.136 18 H 0.086 0.914 19 C -0.154 4.154 20 C -0.195 4.195 21 C -0.074 4.074 22 N -0.316 5.316 23 C -0.060 4.060 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.154 0.846 47 H 0.086 0.914 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.080 1.891 21.691 21.990 hybrid contribution -1.203 -1.276 -0.708 1.891 sum -4.283 0.615 20.983 21.425 Atomic orbital electron populations 1.21656 0.95691 1.01320 1.01648 1.22189 0.96467 0.99681 1.02168 1.22254 0.87776 0.95070 1.02420 1.62279 1.06919 1.54389 1.01913 1.22341 0.99387 0.96257 0.89468 1.21629 0.99915 0.98909 0.93660 1.19060 0.96228 0.95620 0.90593 1.21224 1.34821 1.08108 0.91447 0.92757 1.25027 0.95267 0.95145 0.99066 1.69961 1.38687 1.22246 1.22791 0.86669 0.78786 0.80477 0.82135 1.20199 1.21353 1.20296 1.22131 0.99968 0.95117 0.90027 1.21841 1.00468 0.97469 0.93865 0.91427 1.21592 1.01456 0.98016 0.94293 1.22244 1.00895 0.97993 0.98380 1.22018 0.99307 0.93411 0.92702 1.60704 1.24076 1.43320 1.03465 1.22019 1.00008 0.90693 0.93281 0.93139 0.93188 0.92406 0.91115 0.92409 0.91598 0.90042 0.91511 0.94949 0.93515 0.92679 0.96707 0.96966 0.93031 0.94621 0.91165 0.92324 0.91844 0.91756 0.92241 0.91081 0.91185 0.84551 0.91383 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.25 16 2 C -0.17 -2.10 5.30 -26.73 -0.14 -2.24 16 3 C 0.05 0.70 4.98 -3.83 -0.02 0.68 16 4 N -0.53 -7.56 4.05 -234.63 -0.95 -8.51 16 5 C 0.05 0.90 4.74 -3.83 -0.02 0.88 16 6 C -0.10 -2.15 5.08 -26.73 -0.14 -2.28 16 7 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 9 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.62 5.46 -17.81 -0.10 1.53 16 11 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.06 0.68 4.25 -3.82 -0.02 0.66 16 17 C -0.12 -1.19 2.33 -90.54 -0.21 -1.40 16 18 H 0.07 0.72 6.61 -51.93 -0.34 0.38 16 19 C -0.12 -1.04 5.28 -26.61 -0.14 -1.18 16 20 C -0.16 -1.23 6.08 -26.65 -0.16 -1.39 16 21 C 0.06 0.47 6.55 -3.84 -0.03 0.45 16 22 N -0.69 -6.95 6.87 -113.82 -0.78 -7.74 16 23 C 0.07 0.77 5.70 -3.83 -0.02 0.75 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.04 6.27 -51.93 -0.33 0.71 16 28 H 0.06 0.69 6.26 -51.93 -0.33 0.37 16 29 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 30 H 0.08 1.20 6.40 -51.93 -0.33 0.87 16 31 H 0.07 1.16 7.86 -51.93 -0.41 0.76 16 32 H 0.03 0.57 6.03 -51.93 -0.31 0.25 16 33 H 0.05 0.96 6.52 -51.92 -0.34 0.62 16 34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.04 0.43 5.87 -51.93 -0.30 0.13 16 39 H 0.07 0.87 7.81 -51.93 -0.41 0.47 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.34 3.10 8.86 -39.29 -0.35 2.75 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.09 1.19 7.72 -51.93 -0.40 0.79 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -29.39 359.48 -10.90 -40.29 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -9.22 Total: -0.29 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -1.07 Total: -19.52 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -1.00 Total: -42.82 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.39 -10.90 -40.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233040979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.278 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds