Wall clock time and date at job start Mon Mar 30 2020 06:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47657 * 2 1 4 4 N 1.46894 * 109.47628 * 180.78732 * 3 2 1 5 5 C 1.46897 * 111.00175 * 61.59671 * 4 3 2 6 6 C 1.53000 * 109.46723 * 66.05300 * 5 4 3 7 7 C 1.53007 * 109.47003 * 180.02562 * 6 5 4 8 8 C 1.50702 * 109.46657 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00657 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99679 * 179.97438 * 8 7 6 11 11 N 1.31519 * 119.99651 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00063 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47542 * 60.00122 * 12 10 8 14 14 H 1.48501 * 109.47377 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47117 * 299.99886 * 12 10 8 16 16 C 1.46908 * 110.99834 * 297.64628 * 4 3 2 17 17 C 1.52999 * 109.47193 * 288.22748 * 16 4 3 18 18 H 1.08997 * 109.50219 * 57.07436 * 17 16 4 19 19 C 1.53113 * 109.50375 * 177.19989 * 17 16 4 20 20 C 1.53114 * 109.16433 * 177.59472 * 19 17 16 21 21 C 1.53037 * 109.27559 * 302.34685 * 20 19 17 22 22 N 1.46843 * 109.53028 * 59.17570 * 21 20 19 23 23 C 1.46847 * 111.19464 * 298.26376 * 22 21 20 24 24 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47173 * 300.00363 * 1 2 3 26 26 H 1.08999 * 109.46537 * 60.00163 * 1 2 3 27 27 H 1.09004 * 109.47173 * 239.99637 * 2 1 3 28 28 H 1.09004 * 109.47279 * 120.00313 * 2 1 3 29 29 H 1.09005 * 109.47139 * 60.77895 * 3 2 1 30 30 H 1.09001 * 109.46623 * 300.78780 * 3 2 1 31 31 H 1.08998 * 109.47087 * 186.04772 * 5 4 3 32 32 H 1.08995 * 109.47718 * 306.05338 * 5 4 3 33 33 H 1.09012 * 109.47040 * 299.99503 * 6 5 4 34 34 H 1.08992 * 109.47699 * 59.99785 * 6 5 4 35 35 H 1.08998 * 109.46752 * 299.99438 * 7 6 5 36 36 H 1.08997 * 109.47052 * 59.99991 * 7 6 5 37 37 H 0.96998 * 119.99265 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.46846 * 48.22421 * 16 4 3 39 39 H 1.09003 * 109.47121 * 168.22012 * 16 4 3 40 40 H 1.09005 * 109.52218 * 297.49657 * 19 17 16 41 41 H 1.09001 * 109.52860 * 57.68459 * 19 17 16 42 42 H 1.08996 * 109.50983 * 182.40389 * 20 19 17 43 43 H 1.09000 * 109.53485 * 62.30169 * 20 19 17 44 44 H 1.09006 * 109.45925 * 299.15769 * 21 20 19 45 45 H 1.08998 * 109.46393 * 179.19485 * 21 20 19 46 46 H 1.00904 * 110.99921 * 62.34880 * 22 21 20 47 47 H 1.09004 * 109.46336 * 301.71679 * 23 22 21 48 48 H 1.08999 * 109.46477 * 181.75332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4425 -0.0190 5 6 4.0197 0.7957 -1.2350 6 6 3.6400 1.6347 -2.4568 7 6 4.1714 0.9607 -3.7235 8 6 3.7968 1.7869 -4.9269 9 1 3.2355 2.7009 -4.8010 10 6 4.1707 1.3758 -6.1888 11 7 4.8539 0.2625 -6.3421 12 14 3.7071 2.4001 -7.6804 13 1 4.3006 3.7554 -7.5542 14 1 4.2227 1.7460 -8.9098 15 1 2.2286 2.5129 -7.7633 16 6 4.0511 0.8005 1.1861 17 6 3.8282 1.7127 2.3940 18 1 2.7649 1.9304 2.4943 19 6 4.3298 1.0148 3.6611 20 6 4.1585 1.9573 4.8555 21 6 4.9214 3.2565 4.5873 22 7 4.4043 3.8863 3.3657 23 6 4.6008 3.0190 2.1972 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6883 1.9523 0.8969 30 1 1.6653 1.9603 -0.8829 31 1 5.1049 0.7130 -1.1741 32 1 3.5842 -0.1991 -1.3279 33 1 2.5547 1.7174 -2.5177 34 1 4.0755 2.6295 -2.3641 35 1 5.2565 0.8777 -3.6628 36 1 3.7354 -0.0339 -3.8160 37 1 5.1172 -0.0265 -7.2298 38 1 3.5442 -0.1504 1.3504 39 1 5.1189 0.6251 1.0552 40 1 3.7525 0.1055 3.8290 41 1 5.3837 0.7619 3.5449 42 1 4.5531 1.4823 5.7536 43 1 3.1005 2.1790 4.9960 44 1 5.9815 3.0358 4.4613 45 1 4.7897 3.9356 5.4297 46 1 3.4323 4.1360 3.4712 47 1 5.6623 2.7994 2.0823 48 1 4.2362 3.5254 1.3035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233040979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:24 Heat of formation + Delta-G solvation = -48.919356 kcal Electronic energy + Delta-G solvation = -21386.433428 eV Core-core repulsion = 18473.848724 eV Total energy + Delta-G solvation = -2912.584704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47285 -38.81959 -35.84621 -34.08426 -33.82847 -32.48941 -31.59132 -28.50464 -27.40172 -25.72207 -24.52687 -23.89846 -23.15085 -21.90963 -21.03460 -20.36270 -18.46016 -17.07254 -16.91603 -16.77395 -16.48799 -15.69345 -15.53263 -15.48571 -15.27052 -14.82972 -14.38303 -14.37302 -13.81380 -13.72116 -13.21834 -13.12935 -13.07930 -12.96992 -12.73286 -12.60156 -12.49807 -12.39931 -12.32254 -12.13717 -12.08169 -11.92176 -11.67939 -11.51250 -11.35237 -11.29350 -11.14817 -10.90835 -10.53905 -9.29227 -8.99619 -8.19838 -6.30779 1.39563 1.42942 1.50788 2.41057 2.98929 3.13127 3.46503 3.75727 3.92683 3.99498 4.03486 4.12727 4.14865 4.26844 4.31656 4.36793 4.46298 4.54600 4.61811 4.63395 4.70038 4.72307 4.75937 4.80863 4.86531 4.98187 5.04107 5.06001 5.08402 5.09490 5.14229 5.17959 5.22209 5.25446 5.28510 5.34503 5.41450 5.49025 5.54196 5.76060 5.86859 6.12891 6.18823 6.25780 6.29942 6.56847 6.85924 7.38297 8.91946 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023145 B = 0.003628 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.475263 B = 7715.812084 C = 8300.422043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.161 4.161 3 C 0.055 3.945 4 N -0.535 5.535 5 C 0.065 3.935 6 C -0.086 4.086 7 C 0.028 3.972 8 C -0.543 4.543 9 H 0.058 0.942 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.266 1.266 16 C 0.058 3.942 17 C -0.104 4.104 18 H 0.071 0.929 19 C -0.113 4.113 20 C -0.149 4.149 21 C 0.055 3.945 22 N -0.697 5.697 23 C 0.076 3.924 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.049 0.951 35 H -0.010 1.010 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.344 0.656 47 H 0.056 0.944 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 1.870 23.414 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.200 4.200 3 C -0.073 4.073 4 N -0.257 5.257 5 C -0.062 4.062 6 C -0.124 4.124 7 C -0.010 4.010 8 C -0.581 4.581 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.191 1.191 16 C -0.070 4.070 17 C -0.124 4.124 18 H 0.089 0.911 19 C -0.152 4.152 20 C -0.188 4.188 21 C -0.075 4.075 22 N -0.325 5.325 23 C -0.054 4.054 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.162 0.838 47 H 0.074 0.926 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.184 2.655 23.178 23.702 hybrid contribution -0.838 -1.520 -1.122 2.067 sum -5.022 1.134 22.056 22.649 Atomic orbital electron populations 1.21636 0.94332 1.01934 1.02117 1.22119 0.97653 0.98869 1.01338 1.22264 0.86908 0.95561 1.02566 1.62211 1.07786 1.54255 1.01447 1.22031 0.99108 0.95458 0.89643 1.21352 0.99581 0.98498 0.92966 1.18952 0.94533 0.94697 0.92831 1.21666 1.35092 1.08603 0.92712 0.92350 1.25988 0.94969 0.96355 1.02531 1.70096 1.39639 1.23952 1.23753 0.85511 0.78956 0.78845 0.77817 1.19155 1.20758 1.19132 1.22175 0.99550 0.95688 0.89589 1.21729 1.00482 0.96613 0.93615 0.91106 1.21578 1.01277 0.98393 0.93909 1.22186 1.01146 0.97235 0.98253 1.22063 0.98976 0.94100 0.92316 1.60671 1.24694 1.43394 1.03732 1.21839 0.99253 0.91122 0.93181 0.92495 0.91373 0.93266 0.93740 0.91361 0.89519 0.91786 0.92020 0.95336 0.93306 0.93217 0.99204 0.99346 0.92783 0.94096 0.91719 0.91683 0.92185 0.90432 0.91717 0.91721 0.89857 0.83841 0.92559 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.91 71.98 0.71 -2.22 16 2 C -0.16 -3.90 5.30 30.59 0.16 -3.74 16 3 C 0.05 1.40 4.98 86.30 0.43 1.83 16 4 N -0.53 -15.00 4.05 -896.23 -3.63 -18.63 16 5 C 0.07 2.30 4.74 86.30 0.41 2.71 16 6 C -0.09 -3.68 5.08 30.60 0.16 -3.52 16 7 C 0.03 1.49 4.97 29.85 0.15 1.64 16 8 C -0.54 -31.79 9.11 25.60 0.23 -31.55 16 9 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 10 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 11 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 12 Si 0.96 45.10 29.54 68.60 2.03 47.12 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 C 0.06 1.35 4.25 86.30 0.37 1.71 16 17 C -0.10 -1.96 2.33 -10.74 -0.03 -1.98 16 18 H 0.07 1.32 6.61 -2.39 -0.02 1.31 16 19 C -0.11 -1.78 5.28 30.67 0.16 -1.62 16 20 C -0.15 -1.95 6.08 30.64 0.19 -1.76 16 21 C 0.06 0.83 6.55 86.33 0.57 1.39 16 22 N -0.70 -13.05 6.87 -514.00 -3.53 -16.58 16 23 C 0.08 1.63 5.70 86.33 0.49 2.12 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.31 6.27 -2.39 -0.01 1.30 16 28 H 0.07 1.51 6.26 -2.38 -0.01 1.49 16 29 H 0.09 1.87 6.56 -2.38 -0.02 1.85 16 30 H 0.06 1.86 6.40 -2.39 -0.02 1.85 16 31 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 32 H 0.03 1.03 6.03 -2.39 -0.01 1.01 16 33 H 0.05 2.05 6.52 -2.38 -0.02 2.03 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 38 H 0.04 0.92 5.87 -2.39 -0.01 0.91 16 39 H 0.06 1.58 7.81 -2.39 -0.02 1.56 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.34 5.66 8.86 -89.69 -0.79 4.87 16 47 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.07 1.83 7.72 -2.39 -0.02 1.81 16 Total: -1.00 -63.65 359.48 -0.29 -63.94 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.10 Total: 16.41 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.46 Total: -34.59 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -6.88 Total: -92.88 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -63.65 -0.29 -63.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233040979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.020 kcal (2) G-P(sol) polarization free energy of solvation -63.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds