Wall clock time and date at job start Mon Mar 30 2020 07:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46975 * 2 1 4 4 N 1.46906 * 109.47176 * 184.39948 * 3 2 1 5 5 C 1.46891 * 110.99989 * 196.45431 * 4 3 2 6 6 C 1.53003 * 109.47249 * 164.53255 * 5 4 3 7 7 H 1.09003 * 109.50016 * 56.89412 * 6 5 4 8 8 C 1.53117 * 109.50605 * 177.01219 * 6 5 4 9 9 C 1.53116 * 109.15961 * 177.59605 * 8 6 5 10 10 C 1.53033 * 109.28015 * 302.34339 * 9 8 6 11 11 N 1.46854 * 109.52282 * 59.18119 * 10 9 8 12 12 C 1.46843 * 111.19717 * 298.26055 * 11 10 9 13 13 C 1.46900 * 110.99975 * 72.50013 * 4 3 2 14 14 H 1.09006 * 109.46993 * 327.25581 * 13 4 3 15 15 C 1.50699 * 109.46913 * 207.26014 * 13 4 3 16 16 H 1.07990 * 120.00371 * 354.83427 * 15 13 4 17 17 C 1.37882 * 119.99627 * 174.83576 * 15 13 4 18 18 N 1.31513 * 119.99665 * 179.97438 * 17 15 13 19 19 Si 1.86795 * 120.00114 * 0.02562 * 17 15 13 20 20 H 1.48507 * 109.47375 * 89.99904 * 19 17 15 21 21 H 1.48506 * 109.46842 * 209.99579 * 19 17 15 22 22 H 1.48498 * 109.47283 * 329.99344 * 19 17 15 23 23 C 1.52991 * 109.47206 * 87.25644 * 13 4 3 24 24 C 1.53002 * 109.47226 * 297.04071 * 23 13 4 25 25 H 1.08995 * 109.47247 * 300.00225 * 1 2 3 26 26 H 1.08995 * 109.46892 * 60.00543 * 1 2 3 27 27 H 1.09003 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47562 * 239.99337 * 2 1 3 29 29 H 1.09004 * 109.47073 * 119.99649 * 2 1 3 30 30 H 1.08994 * 109.47544 * 64.39777 * 3 2 1 31 31 H 1.09000 * 109.47464 * 304.39772 * 3 2 1 32 32 H 1.08995 * 109.47592 * 44.53029 * 5 4 3 33 33 H 1.09002 * 109.47415 * 284.52715 * 5 4 3 34 34 H 1.08999 * 109.52228 * 297.49704 * 8 6 5 35 35 H 1.09000 * 109.52320 * 57.69307 * 8 6 5 36 36 H 1.09004 * 109.50589 * 182.40342 * 9 8 6 37 37 H 1.09000 * 109.53906 * 62.31251 * 9 8 6 38 38 H 1.09001 * 109.46306 * 299.16611 * 10 9 8 39 39 H 1.09003 * 109.46535 * 179.19286 * 10 9 8 40 40 H 1.00901 * 110.99451 * 62.35204 * 11 10 9 41 41 H 1.09007 * 109.45870 * 301.72528 * 12 11 10 42 42 H 1.08993 * 109.45332 * 181.75150 * 12 11 10 43 43 H 0.97002 * 119.99882 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.47239 * 57.04031 * 23 13 4 45 45 H 1.09003 * 109.47189 * 177.04336 * 23 13 4 46 46 H 1.09003 * 109.47178 * 189.67270 * 24 23 13 47 47 H 1.08996 * 109.46888 * 309.66651 * 24 23 13 48 48 H 1.08992 * 109.47229 * 69.67003 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5052 1.4439 -0.1062 5 6 4.0595 2.7492 0.2766 6 6 5.5624 2.6113 0.5278 7 1 6.0448 2.2088 -0.3630 8 6 6.1544 3.9851 0.8542 9 6 7.6460 3.8291 1.1629 10 6 7.8217 2.8487 2.3246 11 7 7.2400 1.5497 1.9629 12 6 5.7985 1.6660 1.7080 13 6 3.9353 1.0656 -1.4590 14 1 3.2269 0.3514 -1.8790 15 6 5.3033 0.4369 -1.3936 16 1 5.8385 0.4045 -0.4563 17 6 5.8717 -0.0969 -2.5308 18 7 7.0658 -0.6450 -2.4739 19 14 4.9463 -0.0401 -4.1525 20 1 5.2848 1.2141 -4.8721 21 1 5.3332 -1.2079 -4.9843 22 1 3.4852 -0.0815 -3.8903 23 6 3.9885 2.3120 -2.3445 24 6 2.5851 2.9083 -2.4706 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7424 1.9331 0.9267 31 1 1.6137 1.9786 -0.8479 32 1 3.5699 3.0995 1.1852 33 1 3.8898 3.4659 -0.5270 34 1 6.0269 4.6491 -0.0008 35 1 5.6449 4.4046 1.7216 36 1 8.0641 4.7976 1.4376 37 1 8.1624 3.4466 0.2825 38 1 7.3174 3.2389 3.2087 39 1 8.8835 2.7243 2.5376 40 1 7.7164 1.1488 1.1689 41 1 5.3037 2.0618 2.5949 42 1 5.3910 0.6828 1.4730 43 1 7.4658 -1.0202 -3.2740 44 1 4.6569 3.0476 -1.8968 45 1 4.3578 2.0398 -3.3333 46 1 2.5887 3.6880 -3.2323 47 1 1.8821 2.1256 -2.7554 48 1 2.2848 3.3361 -1.5142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233058085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:09 Heat of formation + Delta-G solvation = 1.129596 kcal Electronic energy + Delta-G solvation = -23159.112080 eV Core-core repulsion = 20248.697662 eV Total energy + Delta-G solvation = -2910.414419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.25980 -37.42861 -33.74620 -32.52138 -31.76032 -31.02740 -29.95233 -28.00203 -25.88131 -23.56085 -23.01422 -22.50849 -21.26700 -20.65867 -19.53567 -18.73396 -16.95660 -15.95214 -15.28851 -14.71650 -14.33895 -14.29762 -14.09493 -14.00868 -13.80094 -13.02273 -12.82478 -12.50190 -12.44453 -12.03020 -11.87452 -11.77999 -11.62450 -11.45521 -11.35950 -11.09434 -10.93492 -10.76487 -10.73096 -10.71309 -10.53096 -10.28194 -10.04410 -9.91230 -9.68739 -9.50478 -9.34021 -8.89086 -8.52419 -7.72564 -7.11004 -6.03943 -3.99013 3.24962 3.36619 3.37446 4.41345 4.70668 4.96952 5.22752 5.25330 5.40067 5.40664 5.47274 5.54085 5.63132 5.68839 5.78416 5.80796 5.82568 5.94187 5.95528 6.01794 6.04474 6.09042 6.12783 6.20757 6.25992 6.29290 6.31351 6.38044 6.42390 6.47471 6.53843 6.56382 6.60290 6.69082 6.78572 6.81371 6.91331 7.05144 7.19743 7.36760 7.71631 7.74394 8.01252 8.05702 8.17794 8.71937 9.07924 9.59460 11.07688 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.008985 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.177348 B = 3115.683349 C = 4170.251924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.039 3.961 4 N -0.516 5.516 5 C 0.065 3.935 6 C -0.131 4.131 7 H 0.118 0.882 8 C -0.113 4.113 9 C -0.155 4.155 10 C 0.059 3.941 11 N -0.691 5.691 12 C 0.079 3.921 13 C 0.183 3.817 14 H 0.038 0.962 15 C -0.496 4.496 16 H 0.097 0.903 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.871 3.129 20 H -0.282 1.282 21 H -0.296 1.296 22 H -0.267 1.267 23 C -0.164 4.164 24 C -0.159 4.159 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.349 0.651 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.262 0.738 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.038 0.962 47 H 0.048 0.952 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 7.533 5.241 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.089 4.089 4 N -0.239 5.239 5 C -0.064 4.064 6 C -0.151 4.151 7 H 0.136 0.864 8 C -0.151 4.151 9 C -0.194 4.194 10 C -0.071 4.071 11 N -0.319 5.319 12 C -0.050 4.050 13 C 0.076 3.924 14 H 0.056 0.944 15 C -0.534 4.534 16 H 0.114 0.886 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.209 1.209 21 H -0.224 1.224 22 H -0.192 1.192 23 C -0.203 4.203 24 C -0.216 4.216 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.167 0.833 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.067 0.933 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.035 6.855 6.146 11.009 hybrid contribution -0.779 1.252 -2.612 3.000 sum -6.815 8.107 3.534 11.165 Atomic orbital electron populations 1.21745 0.96876 1.01021 1.00971 1.21504 0.93790 0.97393 1.03056 1.22429 0.89965 0.96566 0.99960 1.62167 1.06224 1.27339 1.28121 1.22087 0.95158 0.90940 0.98171 1.22183 0.95810 0.94556 1.02565 0.86418 1.21583 0.95199 0.98158 1.00131 1.22229 0.97120 0.99917 1.00178 1.21941 0.99175 0.89332 0.96646 1.60734 1.04766 1.22273 1.44144 1.21886 0.87219 1.00976 0.94902 1.19879 0.97632 0.91482 0.83430 0.94444 1.21193 0.99320 1.35523 0.97339 0.88569 1.24907 0.94738 0.95159 0.98272 1.69865 1.15202 1.39589 1.28952 0.87083 0.81105 0.76653 0.85059 1.20876 1.22364 1.19241 1.22640 0.94992 1.01321 1.01338 1.22158 0.99068 0.99972 1.00391 0.93293 0.93387 0.93099 0.91519 0.91590 0.92682 0.94108 0.93462 0.94369 0.92976 0.93210 0.92697 0.91791 0.91968 0.91780 0.83251 0.93369 0.88726 0.92822 0.91304 0.93069 0.94290 0.93293 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.90 6.05 -26.73 -0.16 -2.06 16 3 C 0.04 0.64 4.47 -3.82 -0.02 0.62 16 4 N -0.52 -9.72 3.72 -228.05 -0.85 -10.56 16 5 C 0.07 1.13 3.56 -3.83 -0.01 1.11 16 6 C -0.13 -2.33 1.47 -90.54 -0.13 -2.47 16 7 H 0.12 2.56 4.81 -51.93 -0.25 2.31 16 8 C -0.11 -1.73 5.29 -26.61 -0.14 -1.87 16 9 C -0.16 -2.27 6.08 -26.65 -0.16 -2.43 16 10 C 0.06 0.88 6.55 -3.83 -0.03 0.85 16 11 N -0.69 -12.09 6.87 -113.81 -0.78 -12.87 16 12 C 0.08 1.43 5.09 -3.84 -0.02 1.41 16 13 C 0.18 3.98 1.32 -68.87 -0.09 3.89 16 14 H 0.04 0.88 4.90 -51.93 -0.25 0.62 16 15 C -0.50 -12.60 7.21 -34.44 -0.25 -12.84 16 16 H 0.10 2.59 4.97 -52.49 -0.26 2.32 16 17 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 18 N -0.90 -25.95 13.96 55.43 0.77 -25.18 16 19 Si 0.87 21.16 24.66 -169.99 -4.19 16.97 16 20 H -0.28 -6.79 6.86 56.52 0.39 -6.40 16 21 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.27 -6.28 6.40 56.52 0.36 -5.92 16 23 C -0.16 -3.35 4.40 -26.73 -0.12 -3.47 16 24 C -0.16 -2.72 7.99 37.16 0.30 -2.42 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.20 6.51 -51.93 -0.34 0.87 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 31 H 0.04 0.66 4.18 -51.93 -0.22 0.44 16 32 H 0.05 0.76 7.73 -51.93 -0.40 0.36 16 33 H 0.04 0.67 4.22 -51.93 -0.22 0.45 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.35 6.69 8.86 -39.29 -0.35 6.35 16 41 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.09 1.97 6.74 -51.93 -0.35 1.62 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.07 1.40 5.41 -51.93 -0.28 1.12 16 45 H 0.05 1.14 3.95 -51.93 -0.21 0.93 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.84 7.61 -51.93 -0.39 0.44 16 48 H 0.05 0.87 5.01 -51.93 -0.26 0.61 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -26.26 333.02 -9.03 -35.29 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.44 Total: 10.72 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.56 Total: -19.39 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.86 Total: -48.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.19 Total: 16.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.26 -9.03 -35.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233058085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.424 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds