Wall clock time and date at job start Mon Mar 30 2020 07:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46975 * 2 1 4 4 N 1.46906 * 109.47176 * 184.39948 * 3 2 1 5 5 C 1.46891 * 110.99989 * 196.45431 * 4 3 2 6 6 C 1.53003 * 109.47249 * 164.53255 * 5 4 3 7 7 H 1.09003 * 109.50016 * 56.89412 * 6 5 4 8 8 C 1.53117 * 109.50605 * 177.01219 * 6 5 4 9 9 C 1.53116 * 109.15961 * 177.59605 * 8 6 5 10 10 C 1.53033 * 109.28015 * 302.34339 * 9 8 6 11 11 N 1.46854 * 109.52282 * 59.18119 * 10 9 8 12 12 C 1.46843 * 111.19717 * 298.26055 * 11 10 9 13 13 C 1.46900 * 110.99975 * 72.50013 * 4 3 2 14 14 H 1.09006 * 109.46993 * 327.25581 * 13 4 3 15 15 C 1.50699 * 109.46913 * 207.26014 * 13 4 3 16 16 H 1.07990 * 120.00371 * 354.83427 * 15 13 4 17 17 C 1.37882 * 119.99627 * 174.83576 * 15 13 4 18 18 N 1.31513 * 119.99665 * 179.97438 * 17 15 13 19 19 Si 1.86795 * 120.00114 * 0.02562 * 17 15 13 20 20 H 1.48507 * 109.47375 * 89.99904 * 19 17 15 21 21 H 1.48506 * 109.46842 * 209.99579 * 19 17 15 22 22 H 1.48498 * 109.47283 * 329.99344 * 19 17 15 23 23 C 1.52991 * 109.47206 * 87.25644 * 13 4 3 24 24 C 1.53002 * 109.47226 * 297.04071 * 23 13 4 25 25 H 1.08995 * 109.47247 * 300.00225 * 1 2 3 26 26 H 1.08995 * 109.46892 * 60.00543 * 1 2 3 27 27 H 1.09003 * 109.46771 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47562 * 239.99337 * 2 1 3 29 29 H 1.09004 * 109.47073 * 119.99649 * 2 1 3 30 30 H 1.08994 * 109.47544 * 64.39777 * 3 2 1 31 31 H 1.09000 * 109.47464 * 304.39772 * 3 2 1 32 32 H 1.08995 * 109.47592 * 44.53029 * 5 4 3 33 33 H 1.09002 * 109.47415 * 284.52715 * 5 4 3 34 34 H 1.08999 * 109.52228 * 297.49704 * 8 6 5 35 35 H 1.09000 * 109.52320 * 57.69307 * 8 6 5 36 36 H 1.09004 * 109.50589 * 182.40342 * 9 8 6 37 37 H 1.09000 * 109.53906 * 62.31251 * 9 8 6 38 38 H 1.09001 * 109.46306 * 299.16611 * 10 9 8 39 39 H 1.09003 * 109.46535 * 179.19286 * 10 9 8 40 40 H 1.00901 * 110.99451 * 62.35204 * 11 10 9 41 41 H 1.09007 * 109.45870 * 301.72528 * 12 11 10 42 42 H 1.08993 * 109.45332 * 181.75150 * 12 11 10 43 43 H 0.97002 * 119.99882 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.47239 * 57.04031 * 23 13 4 45 45 H 1.09003 * 109.47189 * 177.04336 * 23 13 4 46 46 H 1.09003 * 109.47178 * 189.67270 * 24 23 13 47 47 H 1.08996 * 109.46888 * 309.66651 * 24 23 13 48 48 H 1.08992 * 109.47229 * 69.67003 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5052 1.4439 -0.1062 5 6 4.0595 2.7492 0.2766 6 6 5.5624 2.6113 0.5278 7 1 6.0448 2.2088 -0.3630 8 6 6.1544 3.9851 0.8542 9 6 7.6460 3.8291 1.1629 10 6 7.8217 2.8487 2.3246 11 7 7.2400 1.5497 1.9629 12 6 5.7985 1.6660 1.7080 13 6 3.9353 1.0656 -1.4590 14 1 3.2269 0.3514 -1.8790 15 6 5.3033 0.4369 -1.3936 16 1 5.8385 0.4045 -0.4563 17 6 5.8717 -0.0969 -2.5308 18 7 7.0658 -0.6450 -2.4739 19 14 4.9463 -0.0401 -4.1525 20 1 5.2848 1.2141 -4.8721 21 1 5.3332 -1.2079 -4.9843 22 1 3.4852 -0.0815 -3.8903 23 6 3.9885 2.3120 -2.3445 24 6 2.5851 2.9083 -2.4706 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.7424 1.9331 0.9267 31 1 1.6137 1.9786 -0.8479 32 1 3.5699 3.0995 1.1852 33 1 3.8898 3.4659 -0.5270 34 1 6.0269 4.6491 -0.0008 35 1 5.6449 4.4046 1.7216 36 1 8.0641 4.7976 1.4376 37 1 8.1624 3.4466 0.2825 38 1 7.3174 3.2389 3.2087 39 1 8.8835 2.7243 2.5376 40 1 7.7164 1.1488 1.1689 41 1 5.3037 2.0618 2.5949 42 1 5.3910 0.6828 1.4730 43 1 7.4658 -1.0202 -3.2740 44 1 4.6569 3.0476 -1.8968 45 1 4.3578 2.0398 -3.3333 46 1 2.5887 3.6880 -3.2323 47 1 1.8821 2.1256 -2.7554 48 1 2.2848 3.3361 -1.5142 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233058085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:09 Heat of formation + Delta-G solvation = -16.156903 kcal Electronic energy + Delta-G solvation = -23159.861679 eV Core-core repulsion = 20248.697662 eV Total energy + Delta-G solvation = -2911.164017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73235 -38.82284 -35.19793 -34.24370 -33.35274 -32.35292 -31.30120 -29.75615 -27.14943 -25.18351 -24.38891 -23.99185 -22.70870 -21.92718 -20.93361 -20.31715 -18.82833 -17.54996 -16.65442 -16.41078 -15.86543 -15.61802 -15.43749 -15.36016 -15.24970 -14.68613 -14.26438 -13.98983 -13.84518 -13.47069 -13.30399 -13.26464 -13.03770 -12.88477 -12.72675 -12.63451 -12.30715 -12.27655 -12.20317 -12.03558 -11.79196 -11.72217 -11.59571 -11.56308 -11.14923 -11.00837 -10.91369 -10.77222 -10.56508 -9.11766 -8.58950 -8.14173 -6.09541 1.28254 1.35068 1.41326 2.38302 3.15644 3.33621 3.59568 3.97009 4.12432 4.17267 4.21782 4.26374 4.27825 4.32785 4.36188 4.44355 4.55783 4.62825 4.69393 4.75554 4.78138 4.83161 4.86942 4.89824 4.90742 4.94316 5.05934 5.07124 5.09207 5.15128 5.16819 5.21406 5.28055 5.31694 5.38748 5.42236 5.52445 5.55156 5.63181 5.80140 5.85906 6.25659 6.36212 6.52910 6.67947 6.87876 7.00376 7.51527 9.00389 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.008985 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.177348 B = 3115.683349 C = 4170.251924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.039 3.961 4 N -0.529 5.529 5 C 0.067 3.933 6 C -0.124 4.124 7 H 0.073 0.927 8 C -0.108 4.108 9 C -0.151 4.151 10 C 0.060 3.940 11 N -0.700 5.700 12 C 0.090 3.910 13 C 0.191 3.809 14 H 0.024 0.976 15 C -0.478 4.478 16 H 0.073 0.927 17 C 0.016 3.984 18 N -0.945 5.945 19 Si 0.921 3.079 20 H -0.277 1.277 21 H -0.305 1.305 22 H -0.254 1.254 23 C -0.162 4.162 24 C -0.151 4.151 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.333 0.667 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.258 0.742 44 H 0.066 0.934 45 H 0.031 0.969 46 H 0.057 0.943 47 H 0.048 0.952 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 9.945 6.238 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.089 4.089 4 N -0.252 5.252 5 C -0.061 4.061 6 C -0.144 4.144 7 H 0.091 0.909 8 C -0.146 4.146 9 C -0.190 4.190 10 C -0.070 4.070 11 N -0.327 5.327 12 C -0.039 4.039 13 C 0.083 3.917 14 H 0.042 0.958 15 C -0.517 4.517 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.587 5.587 19 Si 0.750 3.250 20 H -0.204 1.204 21 H -0.233 1.233 22 H -0.178 1.178 23 C -0.201 4.201 24 C -0.208 4.208 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.306 9.291 7.159 14.372 hybrid contribution -0.058 0.501 -2.787 2.832 sum -8.364 9.793 4.372 13.600 Atomic orbital electron populations 1.21677 0.94099 1.01946 1.02097 1.21483 0.96208 0.96869 1.01125 1.22521 0.87991 0.97009 1.01347 1.62047 1.08283 1.28693 1.26164 1.22126 0.94685 0.90114 0.99191 1.21983 0.96232 0.95828 1.00398 0.90877 1.21544 0.95560 0.96403 1.01067 1.22181 0.96660 1.01069 0.99102 1.22041 0.99931 0.87914 0.97091 1.60747 1.04527 1.24228 1.43228 1.21680 0.87559 0.99176 0.95504 1.19594 0.94842 0.91754 0.85524 0.95841 1.21530 1.00590 1.33526 0.96029 0.90924 1.25531 0.95405 0.95794 1.01310 1.70007 1.17074 1.42182 1.29442 0.86255 0.80740 0.76219 0.81787 1.20384 1.23348 1.17829 1.22504 0.97392 1.00616 0.99551 1.22069 0.96321 1.00343 1.02044 0.91535 0.92799 0.92400 0.94440 0.92579 0.90490 0.93263 0.91171 0.93977 0.92741 0.91094 0.89967 0.94163 0.90405 0.90620 0.85007 0.91892 0.92381 0.93318 0.91511 0.95102 0.92419 0.93251 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.12 -3.62 6.05 30.59 0.19 -3.43 16 3 C 0.04 1.17 4.47 86.30 0.39 1.56 16 4 N -0.53 -19.41 3.72 -875.41 -3.25 -22.67 16 5 C 0.07 2.18 3.56 86.31 0.31 2.49 16 6 C -0.12 -4.35 1.47 -10.74 -0.02 -4.36 16 7 H 0.07 3.27 4.81 -2.39 -0.01 3.26 16 8 C -0.11 -3.08 5.29 30.67 0.16 -2.92 16 9 C -0.15 -4.18 6.08 30.64 0.19 -3.99 16 10 C 0.06 1.68 6.55 86.32 0.57 2.24 16 11 N -0.70 -24.77 6.87 -514.00 -3.53 -28.30 16 12 C 0.09 3.25 5.09 86.33 0.44 3.69 16 13 C 0.19 8.30 1.32 44.17 0.06 8.35 16 14 H 0.02 1.11 4.90 -2.38 -0.01 1.09 16 15 C -0.48 -25.21 7.21 25.60 0.18 -25.02 16 16 H 0.07 4.13 4.97 -2.92 -0.01 4.12 16 17 C 0.02 0.90 5.45 84.66 0.46 1.36 16 18 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 19 Si 0.92 44.72 24.66 68.60 1.69 46.41 16 20 H -0.28 -13.12 6.86 99.48 0.68 -12.44 16 21 H -0.31 -15.15 7.11 99.48 0.71 -14.45 16 22 H -0.25 -11.62 6.40 99.48 0.64 -10.99 16 23 C -0.16 -6.41 4.40 30.59 0.13 -6.28 16 24 C -0.15 -4.69 7.99 71.98 0.57 -4.12 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.04 1.34 6.51 -2.39 -0.02 1.33 16 29 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.08 2.01 7.72 -2.39 -0.02 2.00 16 31 H 0.05 1.43 4.18 -2.39 -0.01 1.42 16 32 H 0.07 1.99 7.73 -2.39 -0.02 1.97 16 33 H 0.04 1.35 4.22 -2.39 -0.01 1.34 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.33 13.49 8.86 -89.69 -0.79 12.70 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.06 2.51 6.74 -2.39 -0.02 2.49 16 43 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.07 2.65 5.41 -2.39 -0.01 2.64 16 45 H 0.03 1.34 3.95 -2.39 -0.01 1.33 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.05 1.53 7.61 -2.39 -0.02 1.52 16 48 H 0.07 2.00 5.01 -2.39 -0.01 1.99 16 Total: -1.00 -59.33 333.02 -0.40 -59.73 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.05 Total: 34.90 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 4.34 Total: -32.93 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -6.48 Total: -108.11 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.69 Total: 46.41 kcal Total: -59.33 -0.40 -59.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233058085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.573 kcal (2) G-P(sol) polarization free energy of solvation -59.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds