Wall clock time and date at job start Mon Mar 30 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 N 1.46901 * 109.47028 * 174.81708 * 3 2 1 5 5 C 1.46896 * 111.00364 * 195.92677 * 4 3 2 6 6 C 1.53003 * 109.47187 * 73.05991 * 5 4 3 7 7 H 1.09003 * 109.45776 * 295.02580 * 6 5 4 8 8 C 1.53033 * 109.45664 * 175.05388 * 6 5 4 9 9 C 1.53115 * 109.27935 * 180.80779 * 8 6 5 10 10 C 1.53120 * 109.15986 * 57.65385 * 9 8 6 11 11 C 1.53032 * 109.27763 * 302.34697 * 10 9 8 12 12 N 1.46841 * 109.46294 * 55.00101 * 6 5 4 13 13 C 1.46904 * 111.00035 * 71.97200 * 4 3 2 14 14 H 1.08999 * 109.46897 * 326.74353 * 13 4 3 15 15 C 1.50707 * 109.46953 * 206.74122 * 13 4 3 16 16 H 1.07998 * 119.99923 * 354.62061 * 15 13 4 17 17 C 1.37878 * 119.99554 * 174.61244 * 15 13 4 18 18 N 1.31510 * 120.00451 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99633 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46816 * 120.00559 * 19 17 15 22 22 H 1.48498 * 109.47215 * 240.00043 * 19 17 15 23 23 C 1.52999 * 109.47234 * 86.74297 * 13 4 3 24 24 C 1.53004 * 109.46977 * 294.89815 * 23 13 4 25 25 H 1.09004 * 109.46577 * 299.99488 * 1 2 3 26 26 H 1.09000 * 109.47105 * 59.99469 * 1 2 3 27 27 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46945 * 240.00260 * 2 1 3 29 29 H 1.08995 * 109.47766 * 120.00291 * 2 1 3 30 30 H 1.08997 * 109.47114 * 54.82117 * 3 2 1 31 31 H 1.08994 * 109.47177 * 294.81272 * 3 2 1 32 32 H 1.09007 * 109.46761 * 313.06174 * 5 4 3 33 33 H 1.09001 * 109.47640 * 193.06265 * 5 4 3 34 34 H 1.09005 * 109.50118 * 300.75347 * 8 6 5 35 35 H 1.09004 * 109.50755 * 60.86224 * 8 6 5 36 36 H 1.09006 * 109.52162 * 177.55536 * 9 8 6 37 37 H 1.08991 * 109.52458 * 297.74362 * 9 8 6 38 38 H 1.09001 * 109.50163 * 62.28737 * 10 9 8 39 39 H 1.08998 * 109.50166 * 182.40160 * 10 9 8 40 40 H 1.09002 * 109.46068 * 299.16216 * 11 10 9 41 41 H 1.09005 * 109.46421 * 179.19699 * 11 10 9 42 42 H 1.00899 * 111.00153 * 305.84659 * 12 6 5 43 43 H 0.97001 * 120.00558 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46785 * 54.89161 * 23 13 4 45 45 H 1.08995 * 109.47078 * 174.89874 * 23 13 4 46 46 H 1.08998 * 109.46602 * 311.59434 * 24 23 13 47 47 H 1.08996 * 109.47197 * 71.59213 * 24 23 13 48 48 H 1.08993 * 109.46898 * 191.59576 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5036 1.4445 0.1251 5 6 3.9979 2.7746 0.5050 6 6 3.6617 3.0434 1.9733 7 1 2.5795 3.0917 2.0950 8 6 4.2830 4.3742 2.4031 9 6 3.9612 4.6294 3.8781 10 6 4.4897 3.4626 4.7170 11 6 3.8624 2.1582 4.2200 12 7 4.1997 1.9593 2.8048 13 6 4.1387 0.9816 -1.1161 14 1 3.5057 0.2317 -1.5903 15 6 5.4819 0.3769 -0.7978 16 1 5.8673 0.4178 0.2102 17 6 6.2186 -0.2287 -1.7936 18 7 5.7494 -0.2783 -3.0211 19 14 7.8838 -0.9777 -1.3992 20 1 8.1817 -0.7907 0.0435 21 1 7.8615 -2.4284 -1.7157 22 1 8.9320 -0.3100 -2.2121 23 6 4.3250 2.1663 -2.0661 24 6 2.9553 2.7006 -2.4898 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6029 1.9824 0.8399 31 1 1.7545 1.9288 -0.9327 32 1 3.5235 3.5308 -0.1207 33 1 5.0783 2.8140 0.3666 34 1 5.3639 4.3315 2.2684 35 1 3.8718 5.1808 1.7960 36 1 4.4383 5.5551 4.2002 37 1 2.8820 4.7111 4.0066 38 1 5.5738 3.4056 4.6188 39 1 4.2262 3.6178 5.7631 40 1 2.7793 2.2107 4.3313 41 1 4.2475 1.3236 4.8060 42 1 3.8778 1.0601 2.4793 43 1 6.2678 -0.7040 -3.7218 44 1 4.8815 2.9546 -1.5591 45 1 4.8769 1.8414 -2.9481 46 1 2.3241 1.8708 -2.8075 47 1 2.4880 3.2109 -1.6475 48 1 3.0782 3.4008 -3.3160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233075044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:29 Heat of formation + Delta-G solvation = -11.808705 kcal Electronic energy + Delta-G solvation = -22691.388770 eV Core-core repulsion = 19780.413304 eV Total energy + Delta-G solvation = -2910.975465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.95941 -37.31782 -33.55059 -32.61289 -31.68154 -31.25525 -29.88630 -27.26253 -26.15471 -23.98303 -23.14535 -22.39009 -21.05955 -20.61632 -19.34686 -18.65585 -16.38483 -16.17111 -14.93923 -14.84158 -14.40709 -14.29325 -14.13650 -13.81252 -13.59720 -13.28848 -12.81746 -12.79547 -12.51346 -12.17777 -11.88390 -11.63997 -11.58053 -11.22924 -11.17018 -11.05388 -10.79649 -10.62812 -10.61192 -10.56355 -10.38238 -10.19621 -10.11141 -10.06877 -9.91212 -9.62897 -9.35975 -8.81242 -8.25539 -7.84561 -6.98201 -5.91864 -3.92351 3.36897 3.45134 3.51917 4.50428 4.63333 4.86776 5.07023 5.08835 5.23998 5.40088 5.45266 5.50454 5.58817 5.68697 5.69531 5.77678 5.84725 5.92604 5.99911 6.04706 6.07775 6.08075 6.11395 6.15212 6.22925 6.27595 6.31730 6.32860 6.40072 6.45129 6.46411 6.56322 6.70892 6.81709 6.85499 6.92765 7.04433 7.28297 7.50116 7.63560 7.71210 7.99150 8.07680 8.30612 8.45957 8.69710 9.17623 9.72094 11.16151 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.007116 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.487270 B = 3933.774705 C = 4852.388795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.036 3.964 4 N -0.525 5.525 5 C 0.068 3.932 6 C 0.097 3.903 7 H 0.023 0.977 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.116 4.116 11 C 0.058 3.942 12 N -0.672 5.672 13 C 0.218 3.782 14 H 0.042 0.958 15 C -0.486 4.486 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.288 1.288 23 C -0.148 4.148 24 C -0.152 4.152 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.067 0.933 42 H 0.362 0.638 43 H 0.257 0.743 44 H 0.041 0.959 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.207 6.794 9.529 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.092 4.092 4 N -0.249 5.249 5 C -0.061 4.061 6 C -0.014 4.014 7 H 0.041 0.959 8 C -0.152 4.152 9 C -0.155 4.155 10 C -0.154 4.154 11 C -0.072 4.072 12 N -0.307 5.307 13 C 0.112 3.888 14 H 0.060 0.940 15 C -0.525 4.525 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.215 1.215 23 C -0.188 4.188 24 C -0.209 4.209 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.085 0.915 42 H 0.184 0.816 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.410 6.657 9.777 13.454 hybrid contribution -0.297 -0.055 -0.613 0.683 sum -6.708 6.602 9.164 13.136 Atomic orbital electron populations 1.21742 0.97045 1.00879 1.00866 1.21481 0.93629 0.97487 1.02912 1.22442 0.90745 0.96304 0.99691 1.62219 1.02627 1.23239 1.36805 1.22085 1.01658 0.90495 0.91840 1.21468 0.94950 0.90961 0.93987 0.95877 1.21612 1.01931 0.96491 0.95168 1.21539 1.00175 0.97901 0.95913 1.21576 1.01318 0.94625 0.97911 1.21861 0.96685 0.97511 0.91117 1.60142 1.63839 1.06405 1.00313 1.19371 0.94576 0.91766 0.83109 0.94023 1.21237 1.01623 1.34234 0.95392 0.91527 1.24927 0.98000 0.96474 0.95098 1.69929 1.38036 1.45182 1.00759 0.86541 0.84296 0.78679 0.78507 1.19621 1.21391 1.21464 1.22252 0.94465 0.98859 1.03194 1.22121 1.00014 0.99650 0.99066 0.93550 0.93323 0.93196 0.91481 0.91831 0.93327 0.93916 0.95482 0.89632 0.91045 0.92341 0.92432 0.92868 0.91258 0.92536 0.96404 0.91466 0.81615 0.93321 0.94057 0.89509 0.93560 0.94037 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.96 5.92 -26.73 -0.16 -2.12 16 3 C 0.04 0.63 4.39 -3.82 -0.02 0.62 16 4 N -0.53 -10.37 3.27 -228.03 -0.75 -11.12 16 5 C 0.07 1.25 3.07 -3.82 -0.01 1.23 16 6 C 0.10 1.53 2.46 -67.73 -0.17 1.37 16 7 H 0.02 0.37 6.77 -51.93 -0.35 0.02 16 8 C -0.11 -1.58 5.37 -26.66 -0.14 -1.72 16 9 C -0.12 -1.41 6.00 -26.61 -0.16 -1.57 16 10 C -0.12 -1.41 6.09 -26.65 -0.16 -1.57 16 11 C 0.06 0.79 6.55 -3.84 -0.03 0.76 16 12 N -0.67 -10.96 6.50 -106.77 -0.69 -11.66 16 13 C 0.22 5.15 1.64 -68.86 -0.11 5.04 16 14 H 0.04 1.10 6.22 -51.93 -0.32 0.78 16 15 C -0.49 -12.97 8.30 -34.44 -0.29 -13.26 16 16 H 0.07 1.84 7.81 -52.49 -0.41 1.42 16 17 C 0.06 1.51 5.30 -17.82 -0.09 1.41 16 18 N -0.90 -25.43 11.71 55.43 0.65 -24.78 16 19 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.15 -3.38 4.76 -26.73 -0.13 -3.50 16 24 C -0.15 -2.92 8.14 37.16 0.30 -2.62 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.28 6.71 -51.93 -0.35 0.93 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.04 0.76 4.13 -51.93 -0.21 0.55 16 32 H 0.03 0.49 5.70 -51.92 -0.30 0.19 16 33 H 0.09 1.80 6.92 -51.93 -0.36 1.44 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.36 6.42 7.90 -39.29 -0.31 6.11 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 44 H 0.04 0.92 5.99 -51.93 -0.31 0.61 16 45 H 0.09 2.26 6.41 -51.93 -0.33 1.93 16 46 H 0.05 0.91 7.62 -51.93 -0.40 0.51 16 47 H 0.04 0.74 4.76 -51.93 -0.25 0.49 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 347.77 15.07 5.24 5.24 Total: -1.00 -26.67 347.77 -10.23 -36.90 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.86 Total: 6.44 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -0.79 Total: -17.56 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.79 Total: -47.56 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -26.67 -10.23 -36.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233075044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.086 kcal (2) G-P(sol) polarization free energy of solvation -26.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds