Wall clock time and date at job start Mon Mar 30 2020 07:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46948 * 2 1 4 4 N 1.46901 * 109.47028 * 174.81708 * 3 2 1 5 5 C 1.46896 * 111.00364 * 195.92677 * 4 3 2 6 6 C 1.53003 * 109.47187 * 73.05991 * 5 4 3 7 7 H 1.09003 * 109.45776 * 295.02580 * 6 5 4 8 8 C 1.53033 * 109.45664 * 175.05388 * 6 5 4 9 9 C 1.53115 * 109.27935 * 180.80779 * 8 6 5 10 10 C 1.53120 * 109.15986 * 57.65385 * 9 8 6 11 11 C 1.53032 * 109.27763 * 302.34697 * 10 9 8 12 12 N 1.46841 * 109.46294 * 55.00101 * 6 5 4 13 13 C 1.46904 * 111.00035 * 71.97200 * 4 3 2 14 14 H 1.08999 * 109.46897 * 326.74353 * 13 4 3 15 15 C 1.50707 * 109.46953 * 206.74122 * 13 4 3 16 16 H 1.07998 * 119.99923 * 354.62061 * 15 13 4 17 17 C 1.37878 * 119.99554 * 174.61244 * 15 13 4 18 18 N 1.31510 * 120.00451 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99633 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46816 * 120.00559 * 19 17 15 22 22 H 1.48498 * 109.47215 * 240.00043 * 19 17 15 23 23 C 1.52999 * 109.47234 * 86.74297 * 13 4 3 24 24 C 1.53004 * 109.46977 * 294.89815 * 23 13 4 25 25 H 1.09004 * 109.46577 * 299.99488 * 1 2 3 26 26 H 1.09000 * 109.47105 * 59.99469 * 1 2 3 27 27 H 1.09000 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46945 * 240.00260 * 2 1 3 29 29 H 1.08995 * 109.47766 * 120.00291 * 2 1 3 30 30 H 1.08997 * 109.47114 * 54.82117 * 3 2 1 31 31 H 1.08994 * 109.47177 * 294.81272 * 3 2 1 32 32 H 1.09007 * 109.46761 * 313.06174 * 5 4 3 33 33 H 1.09001 * 109.47640 * 193.06265 * 5 4 3 34 34 H 1.09005 * 109.50118 * 300.75347 * 8 6 5 35 35 H 1.09004 * 109.50755 * 60.86224 * 8 6 5 36 36 H 1.09006 * 109.52162 * 177.55536 * 9 8 6 37 37 H 1.08991 * 109.52458 * 297.74362 * 9 8 6 38 38 H 1.09001 * 109.50163 * 62.28737 * 10 9 8 39 39 H 1.08998 * 109.50166 * 182.40160 * 10 9 8 40 40 H 1.09002 * 109.46068 * 299.16216 * 11 10 9 41 41 H 1.09005 * 109.46421 * 179.19699 * 11 10 9 42 42 H 1.00899 * 111.00153 * 305.84659 * 12 6 5 43 43 H 0.97001 * 120.00558 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.46785 * 54.89161 * 23 13 4 45 45 H 1.08995 * 109.47078 * 174.89874 * 23 13 4 46 46 H 1.08998 * 109.46602 * 311.59434 * 24 23 13 47 47 H 1.08996 * 109.47197 * 71.59213 * 24 23 13 48 48 H 1.08993 * 109.46898 * 191.59576 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5036 1.4445 0.1251 5 6 3.9979 2.7746 0.5050 6 6 3.6617 3.0434 1.9733 7 1 2.5795 3.0917 2.0950 8 6 4.2830 4.3742 2.4031 9 6 3.9612 4.6294 3.8781 10 6 4.4897 3.4626 4.7170 11 6 3.8624 2.1582 4.2200 12 7 4.1997 1.9593 2.8048 13 6 4.1387 0.9816 -1.1161 14 1 3.5057 0.2317 -1.5903 15 6 5.4819 0.3769 -0.7978 16 1 5.8673 0.4178 0.2102 17 6 6.2186 -0.2287 -1.7936 18 7 5.7494 -0.2783 -3.0211 19 14 7.8838 -0.9777 -1.3992 20 1 8.1817 -0.7907 0.0435 21 1 7.8615 -2.4284 -1.7157 22 1 8.9320 -0.3100 -2.2121 23 6 4.3250 2.1663 -2.0661 24 6 2.9553 2.7006 -2.4898 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6029 1.9824 0.8399 31 1 1.7545 1.9288 -0.9327 32 1 3.5235 3.5308 -0.1207 33 1 5.0783 2.8140 0.3666 34 1 5.3639 4.3315 2.2684 35 1 3.8718 5.1808 1.7960 36 1 4.4383 5.5551 4.2002 37 1 2.8820 4.7111 4.0066 38 1 5.5738 3.4056 4.6188 39 1 4.2262 3.6178 5.7631 40 1 2.7793 2.2107 4.3313 41 1 4.2475 1.3236 4.8060 42 1 3.8778 1.0601 2.4793 43 1 6.2678 -0.7040 -3.7218 44 1 4.8815 2.9546 -1.5591 45 1 4.8769 1.8414 -2.9481 46 1 2.3241 1.8708 -2.8075 47 1 2.4880 3.2109 -1.6475 48 1 3.0782 3.4008 -3.3160 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233075044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:28 Heat of formation + Delta-G solvation = -27.060494 kcal Electronic energy + Delta-G solvation = -22692.050137 eV Core-core repulsion = 19780.413304 eV Total energy + Delta-G solvation = -2911.636833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.37504 -38.68745 -35.21830 -34.12517 -33.18059 -32.53917 -31.32808 -29.09808 -27.45955 -25.66480 -24.44989 -23.78156 -22.41257 -22.09251 -20.55234 -20.26723 -18.36092 -17.51075 -16.66605 -16.18950 -15.95610 -15.81850 -15.56033 -15.10480 -14.85720 -14.62172 -14.37092 -13.88712 -13.78138 -13.59342 -13.40315 -13.12382 -13.06804 -12.81714 -12.73413 -12.64694 -12.42236 -12.30063 -11.99246 -11.95956 -11.74489 -11.72510 -11.59788 -11.49329 -11.21666 -11.17985 -10.92493 -10.75711 -10.34027 -9.08546 -8.60275 -8.02815 -6.09194 1.40968 1.44107 1.56118 2.48312 3.25356 3.35284 3.50463 4.00299 4.05897 4.14757 4.16850 4.30625 4.33631 4.41254 4.47683 4.51258 4.53944 4.61721 4.67992 4.69709 4.77898 4.84575 4.87525 4.91421 4.96585 5.05715 5.05871 5.10136 5.15589 5.16730 5.25569 5.27409 5.30127 5.34040 5.40402 5.50987 5.54449 5.56949 5.66437 5.81285 5.88106 6.38786 6.44400 6.69458 6.74012 6.89713 7.06863 7.58864 9.03502 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.007116 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.487270 B = 3933.774705 C = 4852.388795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.040 3.960 4 N -0.529 5.529 5 C 0.075 3.925 6 C 0.105 3.895 7 H 0.030 0.970 8 C -0.113 4.113 9 C -0.113 4.113 10 C -0.114 4.114 11 C 0.057 3.943 12 N -0.690 5.690 13 C 0.228 3.772 14 H 0.011 0.989 15 C -0.495 4.495 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.947 3.053 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.141 4.141 24 C -0.139 4.139 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.032 0.968 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.071 0.929 42 H 0.350 0.650 43 H 0.257 0.743 44 H 0.040 0.960 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.060 0.940 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.435 8.057 11.238 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C -0.088 4.088 4 N -0.252 5.252 5 C -0.054 4.054 6 C -0.006 4.006 7 H 0.048 0.952 8 C -0.151 4.151 9 C -0.151 4.151 10 C -0.152 4.152 11 C -0.072 4.072 12 N -0.324 5.324 13 C 0.121 3.879 14 H 0.029 0.971 15 C -0.534 4.534 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.181 4.181 24 C -0.196 4.196 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.170 0.830 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.643 7.935 11.507 15.931 hybrid contribution 0.085 -0.456 -1.115 1.207 sum -7.558 7.480 10.392 14.868 Atomic orbital electron populations 1.21667 0.94085 1.01977 1.01931 1.21424 0.96168 0.96608 1.00945 1.22479 0.88957 0.96983 1.00380 1.62114 1.04141 1.24337 1.34625 1.22011 0.99535 0.89710 0.94097 1.21388 0.95362 0.91843 0.91960 0.95193 1.21612 1.00771 0.95615 0.97127 1.21523 1.00947 0.98510 0.94069 1.21581 1.00417 0.93887 0.99334 1.21954 0.97327 0.98608 0.89343 1.60166 1.64410 1.05882 1.01975 1.19037 0.92874 0.91359 0.84673 0.97094 1.21476 1.03063 1.34221 0.94592 0.92969 1.25577 1.00967 0.97139 0.95074 1.70043 1.39121 1.45986 1.01372 0.85661 0.80814 0.77921 0.78131 1.19575 1.21078 1.21148 1.22067 0.96177 0.98492 1.01347 1.21967 0.97598 0.99702 1.00296 0.91780 0.92861 0.92190 0.94716 0.92528 0.91283 0.94025 0.94961 0.92930 0.92689 0.91147 0.90718 0.91867 0.92506 0.90116 0.95589 0.91084 0.82976 0.93432 0.94182 0.93117 0.94194 0.92111 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.76 16 2 C -0.11 -3.76 5.92 30.60 0.18 -3.58 16 3 C 0.04 1.35 4.39 86.30 0.38 1.72 16 4 N -0.53 -21.09 3.27 -875.35 -2.86 -23.95 16 5 C 0.07 2.74 3.07 86.30 0.26 3.00 16 6 C 0.10 3.17 2.46 44.94 0.11 3.28 16 7 H 0.03 0.88 6.77 -2.39 -0.02 0.87 16 8 C -0.11 -2.93 5.37 30.64 0.16 -2.76 16 9 C -0.11 -2.36 6.00 30.67 0.18 -2.17 16 10 C -0.11 -2.48 6.09 30.65 0.19 -2.29 16 11 C 0.06 1.43 6.55 86.33 0.57 1.99 16 12 N -0.69 -22.03 6.50 -491.71 -3.20 -25.23 16 13 C 0.23 11.12 1.64 44.17 0.07 11.19 16 14 H 0.01 0.62 6.22 -2.39 -0.01 0.60 16 15 C -0.49 -27.32 8.30 25.60 0.21 -27.11 16 16 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 17 C 0.01 0.55 5.30 84.66 0.45 1.00 16 18 N -0.92 -53.91 11.71 21.45 0.25 -53.66 16 19 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 C -0.14 -6.58 4.76 30.60 0.15 -6.43 16 24 C -0.14 -5.26 8.14 71.98 0.59 -4.68 16 25 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.03 1.36 6.71 -2.39 -0.02 1.35 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.07 6.44 -2.39 -0.02 2.06 16 31 H 0.04 1.43 4.13 -2.39 -0.01 1.43 16 32 H 0.03 1.13 5.70 -2.38 -0.01 1.12 16 33 H 0.05 2.27 6.92 -2.39 -0.02 2.25 16 34 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.35 12.38 7.90 -89.69 -0.71 11.67 16 43 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 44 H 0.04 1.83 5.99 -2.39 -0.01 1.82 16 45 H 0.05 2.73 6.41 -2.39 -0.02 2.72 16 46 H 0.04 1.55 7.62 -2.39 -0.02 1.53 16 47 H 0.06 2.06 4.76 -2.39 -0.01 2.05 16 48 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -59.01 347.77 0.64 -58.36 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.20 Total: 26.75 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.21 Total: -29.60 kcal Atomic # 7 Polarization: -97.03 SS G_CDS: -5.81 Total: -102.84 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -59.01 0.64 -58.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233075044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.304 kcal (2) G-P(sol) polarization free energy of solvation -59.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds