Wall clock time and date at job start Mon Mar 30 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 N 1.46898 * 109.46925 * 184.63835 * 3 2 1 5 5 C 1.46901 * 111.00476 * 72.54395 * 4 3 2 6 6 C 1.52999 * 109.47035 * 201.84619 * 5 4 3 7 7 H 1.08999 * 109.46155 * 59.46448 * 6 5 4 8 8 C 1.53039 * 109.45783 * 179.42675 * 6 5 4 9 9 C 1.53122 * 109.27491 * 179.19876 * 8 6 5 10 10 C 1.53127 * 109.15879 * 302.34463 * 9 8 6 11 11 C 1.53035 * 109.27884 * 57.65888 * 10 9 8 12 12 N 1.46847 * 109.46532 * 299.47881 * 6 5 4 13 13 C 1.46903 * 110.99767 * 196.49720 * 4 3 2 14 14 H 1.08998 * 109.47075 * 189.33038 * 13 4 3 15 15 C 1.50704 * 109.47051 * 69.32808 * 13 4 3 16 16 H 1.08002 * 119.99868 * 324.25987 * 15 13 4 17 17 C 1.37878 * 119.99980 * 144.26386 * 15 13 4 18 18 N 1.31515 * 119.99638 * 349.19077 * 17 15 13 19 19 Si 1.86799 * 120.00176 * 169.20089 * 17 15 13 20 20 H 1.48495 * 109.47148 * 89.99296 * 19 17 15 21 21 H 1.48496 * 109.47208 * 209.99660 * 19 17 15 22 22 H 1.48504 * 109.46604 * 329.99445 * 19 17 15 23 23 C 1.52997 * 109.47210 * 309.32836 * 13 4 3 24 24 C 1.53002 * 109.47346 * 185.05717 * 23 13 4 25 25 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47346 * 299.99704 * 1 2 3 27 27 H 1.09003 * 109.47278 * 59.99997 * 1 2 3 28 28 H 1.09009 * 109.47038 * 240.00104 * 2 1 3 29 29 H 1.09003 * 109.47278 * 120.00003 * 2 1 3 30 30 H 1.08992 * 109.47225 * 64.63296 * 3 2 1 31 31 H 1.08998 * 109.46721 * 304.63051 * 3 2 1 32 32 H 1.09003 * 109.46889 * 321.85012 * 5 4 3 33 33 H 1.08999 * 109.47060 * 81.84895 * 5 4 3 34 34 H 1.08998 * 109.50622 * 299.13378 * 8 6 5 35 35 H 1.08998 * 109.50632 * 59.25742 * 8 6 5 36 36 H 1.09006 * 109.52501 * 182.44315 * 9 8 6 37 37 H 1.08998 * 109.52653 * 62.24971 * 9 8 6 38 38 H 1.08996 * 109.50356 * 297.71443 * 10 9 8 39 39 H 1.09005 * 109.49908 * 177.59674 * 10 9 8 40 40 H 1.09000 * 109.46428 * 180.80407 * 11 10 9 41 41 H 1.08995 * 109.45584 * 60.82523 * 11 10 9 42 42 H 1.00899 * 110.99814 * 302.34362 * 12 6 5 43 43 H 0.97005 * 119.99763 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47362 * 65.05645 * 23 13 4 45 45 H 1.08995 * 109.47100 * 305.06177 * 23 13 4 46 46 H 1.09000 * 109.46959 * 166.43739 * 24 23 13 47 47 H 1.08992 * 109.47105 * 286.43726 * 24 23 13 48 48 H 1.09001 * 109.46796 * 46.44031 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4440 -0.1120 5 6 3.9295 1.0685 -1.4672 6 6 5.3701 0.5548 -1.4261 7 1 5.4284 -0.3104 -0.7657 8 6 5.8076 0.1504 -2.8357 9 6 7.2561 -0.3442 -2.7930 10 6 8.1478 0.7611 -2.2205 11 6 7.6425 1.1478 -0.8287 12 7 6.2534 1.6147 -0.9232 13 6 4.0606 2.7486 0.2715 14 1 5.1217 2.7782 0.0240 15 6 3.8847 2.9534 1.7541 16 1 2.9998 2.5815 2.2494 17 6 4.8533 3.6155 2.4784 18 7 6.0187 3.8802 1.9294 19 14 4.5104 4.1361 4.2392 20 1 4.9144 3.0476 5.1649 21 1 5.2840 5.3645 4.5518 22 1 3.0598 4.4103 4.4007 23 6 3.3289 3.8577 -0.4869 24 6 3.9896 5.2041 -0.1844 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.7460 1.9318 0.9285 31 1 1.6105 1.9797 -0.8456 32 1 3.2750 0.2850 -1.8491 33 1 3.8729 1.9395 -2.1201 34 1 5.1615 -0.6472 -3.2025 35 1 5.7365 1.0116 -3.5000 36 1 7.5861 -0.5925 -3.8018 37 1 7.3205 -1.2289 -2.1596 38 1 8.1136 1.6320 -2.8751 39 1 9.1737 0.3999 -2.1478 40 1 8.2667 1.9446 -0.4241 41 1 7.6900 0.2799 -0.1711 42 1 6.1882 2.4421 -1.4969 43 1 6.7003 4.3457 2.4391 44 1 2.2857 3.8860 -0.1721 45 1 3.3799 3.6603 -1.5576 46 1 3.6352 5.9506 -0.8952 47 1 3.7325 5.5156 0.8280 48 1 5.0717 5.1052 -0.2704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233101232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:32 Heat of formation + Delta-G solvation = -7.947801 kcal Electronic energy + Delta-G solvation = -22856.621447 eV Core-core repulsion = 19945.813403 eV Total energy + Delta-G solvation = -2910.808044 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.89391 -36.97589 -33.68308 -32.44904 -31.22517 -31.11488 -30.06923 -26.61036 -25.76510 -24.10125 -22.82715 -22.18241 -21.00855 -20.60992 -19.93170 -18.47132 -16.15321 -15.21586 -15.09280 -14.55852 -14.31500 -14.28878 -13.96418 -13.74558 -13.55530 -13.14468 -12.94612 -12.43715 -12.37142 -12.01232 -11.75225 -11.53445 -11.40125 -11.15117 -11.00197 -10.79563 -10.77867 -10.62868 -10.56113 -10.45567 -10.32160 -10.23081 -10.13610 -9.96445 -9.74943 -9.61047 -9.01575 -8.74199 -8.16525 -7.18597 -6.77173 -5.75762 -3.71500 3.42179 3.49097 3.53092 4.60314 4.83427 4.90441 5.10957 5.21852 5.29456 5.49322 5.53464 5.56317 5.68185 5.75504 5.80460 5.86570 5.97249 6.03741 6.04892 6.14667 6.20050 6.22346 6.26701 6.30783 6.39159 6.39880 6.41483 6.47056 6.50753 6.55933 6.63078 6.74013 6.79294 6.90348 6.97281 7.04544 7.34266 7.51584 7.65399 7.81939 7.91403 8.09740 8.17303 8.51187 8.82775 8.96900 9.40596 9.86150 11.30960 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.008408 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.318275 B = 3329.536761 C = 4695.009526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.059 3.941 4 N -0.515 5.515 5 C 0.057 3.943 6 C 0.099 3.901 7 H 0.081 0.919 8 C -0.154 4.154 9 C -0.115 4.115 10 C -0.159 4.159 11 C 0.063 3.937 12 N -0.637 5.637 13 C 0.174 3.826 14 H 0.139 0.861 15 C -0.487 4.487 16 H 0.045 0.955 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.873 3.127 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.279 1.279 23 C -0.142 4.142 24 C -0.119 4.119 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.012 0.988 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.334 0.666 43 H 0.253 0.747 44 H 0.032 0.968 45 H 0.015 0.985 46 H 0.010 0.990 47 H 0.051 0.949 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -6.074 -9.126 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.070 4.070 4 N -0.237 5.237 5 C -0.073 4.073 6 C -0.012 4.012 7 H 0.099 0.901 8 C -0.194 4.194 9 C -0.152 4.152 10 C -0.199 4.199 11 C -0.067 4.067 12 N -0.265 5.265 13 C 0.068 3.932 14 H 0.155 0.845 15 C -0.526 4.526 16 H 0.063 0.937 17 C -0.128 4.128 18 N -0.512 5.512 19 Si 0.702 3.298 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.204 1.204 23 C -0.182 4.182 24 C -0.177 4.177 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.070 0.930 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.380 -6.458 -8.068 10.341 hybrid contribution -0.355 0.919 -0.534 1.120 sum -0.735 -5.539 -8.601 10.257 Atomic orbital electron populations 1.21744 0.97014 1.00570 1.01325 1.21576 0.93984 0.98558 1.01690 1.22015 0.90275 0.94358 1.00321 1.62504 1.06412 1.34536 1.20285 1.22113 0.94538 0.98094 0.92508 1.21566 0.92653 0.95237 0.91755 0.90123 1.22329 0.96350 1.00902 0.99787 1.21508 0.95266 0.98397 1.00073 1.22349 0.99118 0.98622 0.99815 1.21959 0.90268 1.00668 0.93791 1.60767 1.05309 1.05565 1.54860 1.20474 0.99901 0.79103 0.93673 0.84450 1.20891 1.04072 1.34671 0.92949 0.93676 1.24768 0.94795 0.96623 0.96610 1.69970 1.03505 1.41270 1.36457 0.86920 0.78031 0.78005 0.86844 1.21119 1.21605 1.20378 1.22323 0.99596 0.99426 0.96842 1.21419 1.01358 0.95353 0.99596 0.93509 0.92921 0.93479 0.93027 0.91696 0.90534 0.96999 0.92562 0.95978 0.92193 0.92565 0.92974 0.92154 0.92548 0.92340 0.90783 0.91550 0.84754 0.93718 0.94889 0.96613 0.97054 0.92950 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.96 6.06 -26.73 -0.16 -2.12 16 3 C 0.06 1.14 3.57 -3.82 -0.01 1.13 16 4 N -0.52 -10.84 4.29 -228.04 -0.98 -11.82 16 5 C 0.06 1.01 4.52 -3.82 -0.02 1.00 16 6 C 0.10 1.65 2.69 -67.72 -0.18 1.47 16 7 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 8 C -0.15 -2.08 5.36 -26.65 -0.14 -2.22 16 9 C -0.11 -1.44 6.00 -26.60 -0.16 -1.59 16 10 C -0.16 -2.09 6.08 -26.65 -0.16 -2.25 16 11 C 0.06 1.02 6.55 -3.83 -0.03 0.99 16 12 N -0.64 -11.67 3.65 -106.76 -0.39 -12.06 16 13 C 0.17 4.10 1.78 -68.86 -0.12 3.97 16 14 H 0.14 3.33 3.40 -51.93 -0.18 3.16 16 15 C -0.49 -13.06 7.53 -34.44 -0.26 -13.32 16 16 H 0.05 1.25 6.58 -52.49 -0.35 0.91 16 17 C 0.07 2.00 4.58 -17.82 -0.08 1.92 16 18 N -0.87 -23.76 12.35 55.43 0.68 -23.07 16 19 Si 0.87 21.41 29.55 -169.99 -5.02 16.39 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.14 -3.16 4.55 -26.73 -0.12 -3.28 16 24 C -0.12 -2.66 9.07 37.16 0.34 -2.32 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.80 6.47 -51.92 -0.34 0.46 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.66 6.31 -51.93 -0.33 1.33 16 31 H 0.01 0.23 7.28 -51.93 -0.38 -0.15 16 32 H 0.06 0.92 6.22 -51.93 -0.32 0.60 16 33 H 0.02 0.41 6.29 -51.93 -0.33 0.08 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.33 6.19 8.27 -39.29 -0.33 5.87 16 43 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.03 0.74 6.96 -51.93 -0.36 0.38 16 45 H 0.02 0.32 6.49 -51.93 -0.34 -0.01 16 46 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.05 1.25 7.46 -51.93 -0.39 0.86 16 48 H 0.06 1.43 7.77 -51.93 -0.40 1.03 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -26.78 351.22 -10.24 -37.01 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -9.08 Total: 6.56 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -0.74 Total: -18.31 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.68 Total: -46.95 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.78 -10.24 -37.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233101232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.067 kcal (2) G-P(sol) polarization free energy of solvation -26.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds