Wall clock time and date at job start Mon Mar 30 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47109 * 2 1 4 4 N 1.46898 * 109.46925 * 184.63835 * 3 2 1 5 5 C 1.46901 * 111.00476 * 72.54395 * 4 3 2 6 6 C 1.52999 * 109.47035 * 201.84619 * 5 4 3 7 7 H 1.08999 * 109.46155 * 59.46448 * 6 5 4 8 8 C 1.53039 * 109.45783 * 179.42675 * 6 5 4 9 9 C 1.53122 * 109.27491 * 179.19876 * 8 6 5 10 10 C 1.53127 * 109.15879 * 302.34463 * 9 8 6 11 11 C 1.53035 * 109.27884 * 57.65888 * 10 9 8 12 12 N 1.46847 * 109.46532 * 299.47881 * 6 5 4 13 13 C 1.46903 * 110.99767 * 196.49720 * 4 3 2 14 14 H 1.08998 * 109.47075 * 189.33038 * 13 4 3 15 15 C 1.50704 * 109.47051 * 69.32808 * 13 4 3 16 16 H 1.08002 * 119.99868 * 324.25987 * 15 13 4 17 17 C 1.37878 * 119.99980 * 144.26386 * 15 13 4 18 18 N 1.31515 * 119.99638 * 349.19077 * 17 15 13 19 19 Si 1.86799 * 120.00176 * 169.20089 * 17 15 13 20 20 H 1.48495 * 109.47148 * 89.99296 * 19 17 15 21 21 H 1.48496 * 109.47208 * 209.99660 * 19 17 15 22 22 H 1.48504 * 109.46604 * 329.99445 * 19 17 15 23 23 C 1.52997 * 109.47210 * 309.32836 * 13 4 3 24 24 C 1.53002 * 109.47346 * 185.05717 * 23 13 4 25 25 H 1.09003 * 109.46994 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47346 * 299.99704 * 1 2 3 27 27 H 1.09003 * 109.47278 * 59.99997 * 1 2 3 28 28 H 1.09009 * 109.47038 * 240.00104 * 2 1 3 29 29 H 1.09003 * 109.47278 * 120.00003 * 2 1 3 30 30 H 1.08992 * 109.47225 * 64.63296 * 3 2 1 31 31 H 1.08998 * 109.46721 * 304.63051 * 3 2 1 32 32 H 1.09003 * 109.46889 * 321.85012 * 5 4 3 33 33 H 1.08999 * 109.47060 * 81.84895 * 5 4 3 34 34 H 1.08998 * 109.50622 * 299.13378 * 8 6 5 35 35 H 1.08998 * 109.50632 * 59.25742 * 8 6 5 36 36 H 1.09006 * 109.52501 * 182.44315 * 9 8 6 37 37 H 1.08998 * 109.52653 * 62.24971 * 9 8 6 38 38 H 1.08996 * 109.50356 * 297.71443 * 10 9 8 39 39 H 1.09005 * 109.49908 * 177.59674 * 10 9 8 40 40 H 1.09000 * 109.46428 * 180.80407 * 11 10 9 41 41 H 1.08995 * 109.45584 * 60.82523 * 11 10 9 42 42 H 1.00899 * 110.99814 * 302.34362 * 12 6 5 43 43 H 0.97005 * 119.99763 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.47362 * 65.05645 * 23 13 4 45 45 H 1.08995 * 109.47100 * 305.06177 * 23 13 4 46 46 H 1.09000 * 109.46959 * 166.43739 * 24 23 13 47 47 H 1.08992 * 109.47105 * 286.43726 * 24 23 13 48 48 H 1.09001 * 109.46796 * 46.44031 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5047 1.4440 -0.1120 5 6 3.9295 1.0685 -1.4672 6 6 5.3701 0.5548 -1.4261 7 1 5.4284 -0.3104 -0.7657 8 6 5.8076 0.1504 -2.8357 9 6 7.2561 -0.3442 -2.7930 10 6 8.1478 0.7611 -2.2205 11 6 7.6425 1.1478 -0.8287 12 7 6.2534 1.6147 -0.9232 13 6 4.0606 2.7486 0.2715 14 1 5.1217 2.7782 0.0240 15 6 3.8847 2.9534 1.7541 16 1 2.9998 2.5815 2.2494 17 6 4.8533 3.6155 2.4784 18 7 6.0187 3.8802 1.9294 19 14 4.5104 4.1361 4.2392 20 1 4.9144 3.0476 5.1649 21 1 5.2840 5.3645 4.5518 22 1 3.0598 4.4103 4.4007 23 6 3.3289 3.8577 -0.4869 24 6 3.9896 5.2041 -0.1844 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.7460 1.9318 0.9285 31 1 1.6105 1.9797 -0.8456 32 1 3.2750 0.2850 -1.8491 33 1 3.8729 1.9395 -2.1201 34 1 5.1615 -0.6472 -3.2025 35 1 5.7365 1.0116 -3.5000 36 1 7.5861 -0.5925 -3.8018 37 1 7.3205 -1.2289 -2.1596 38 1 8.1136 1.6320 -2.8751 39 1 9.1737 0.3999 -2.1478 40 1 8.2667 1.9446 -0.4241 41 1 7.6900 0.2799 -0.1711 42 1 6.1882 2.4421 -1.4969 43 1 6.7003 4.3457 2.4391 44 1 2.2857 3.8860 -0.1721 45 1 3.3799 3.6603 -1.5576 46 1 3.6352 5.9506 -0.8952 47 1 3.7325 5.5156 0.8280 48 1 5.0717 5.1052 -0.2704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233101232.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:31 Heat of formation + Delta-G solvation = -22.483752 kcal Electronic energy + Delta-G solvation = -22857.251773 eV Core-core repulsion = 19945.813403 eV Total energy + Delta-G solvation = -2911.438370 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27530 -38.46622 -35.35613 -33.92590 -32.97346 -32.37350 -31.53413 -28.39263 -27.15189 -25.80403 -24.20661 -23.71231 -22.33263 -22.15002 -21.12939 -20.17331 -18.10246 -16.81359 -16.42792 -16.09713 -15.93732 -15.62150 -15.31409 -15.25000 -14.91920 -14.73556 -14.40780 -13.99030 -13.66023 -13.49488 -13.27113 -12.90684 -12.82054 -12.77272 -12.65252 -12.45245 -12.31629 -12.11597 -12.02881 -11.90583 -11.85246 -11.82046 -11.59463 -11.39525 -11.25215 -11.15717 -10.78465 -10.63529 -10.18010 -8.64325 -8.37152 -7.83094 -5.82590 1.42570 1.46391 1.53042 2.57107 3.33424 3.53478 3.65110 3.99226 4.07899 4.18714 4.22168 4.30158 4.44319 4.48391 4.56122 4.58101 4.61081 4.67192 4.73143 4.74449 4.83855 4.90202 4.98330 5.00359 5.02074 5.09014 5.13297 5.16813 5.21774 5.23857 5.25479 5.30054 5.35638 5.45610 5.49035 5.53455 5.54027 5.71936 5.82024 5.95473 6.22298 6.45662 6.58125 6.76533 7.08618 7.17707 7.41119 7.76429 9.20925 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.008408 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.318275 B = 3329.536761 C = 4695.009526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.063 3.937 4 N -0.533 5.533 5 C 0.060 3.940 6 C 0.104 3.896 7 H 0.062 0.938 8 C -0.144 4.144 9 C -0.111 4.111 10 C -0.149 4.149 11 C 0.066 3.934 12 N -0.663 5.663 13 C 0.174 3.826 14 H 0.135 0.865 15 C -0.500 4.500 16 H 0.025 0.975 17 C 0.039 3.961 18 N -0.886 5.886 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.286 1.286 22 H -0.281 1.281 23 C -0.135 4.135 24 C -0.110 4.110 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.015 0.985 32 H 0.075 0.925 33 H 0.019 0.981 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.330 0.670 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.031 0.969 46 H 0.039 0.961 47 H 0.028 0.972 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 -7.047 -10.969 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.065 4.065 4 N -0.255 5.255 5 C -0.068 4.068 6 C -0.007 4.007 7 H 0.080 0.920 8 C -0.184 4.184 9 C -0.149 4.149 10 C -0.188 4.188 11 C -0.064 4.064 12 N -0.291 5.291 13 C 0.067 3.933 14 H 0.152 0.848 15 C -0.539 4.539 16 H 0.043 0.957 17 C -0.161 4.161 18 N -0.525 5.525 19 Si 0.746 3.254 20 H -0.214 1.214 21 H -0.211 1.211 22 H -0.207 1.207 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.093 0.907 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.148 0.852 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.050 0.950 46 H 0.058 0.942 47 H 0.047 0.953 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.629 -7.442 -9.913 12.411 hybrid contribution -0.303 1.207 0.060 1.246 sum -0.932 -6.235 -9.852 11.697 Atomic orbital electron populations 1.21697 0.94807 1.02083 1.01499 1.21489 0.95859 0.96094 1.01543 1.21964 0.89554 0.96284 0.98722 1.62364 1.07322 1.33206 1.22631 1.22165 0.95657 0.98449 0.90557 1.21474 0.91782 0.93951 0.93488 0.91982 1.22208 0.97347 1.01535 0.97280 1.21500 0.94266 0.97851 1.01264 1.22215 1.00004 0.99117 0.97493 1.21865 0.89299 0.99510 0.95705 1.60646 1.06655 1.06148 1.55698 1.20362 1.00236 0.80697 0.91981 0.84834 1.21131 1.03225 1.34587 0.94955 0.95694 1.25213 0.94910 0.96953 0.99034 1.70051 1.03666 1.41666 1.37091 0.86228 0.77594 0.77602 0.84004 1.21436 1.21128 1.20653 1.22200 0.98760 0.99003 0.97522 1.21300 1.00341 0.96175 0.98944 0.91312 0.93557 0.92539 0.91720 0.93183 0.93710 0.96676 0.90655 0.96268 0.90580 0.92227 0.90707 0.92202 0.92258 0.90790 0.92393 0.92729 0.85203 0.93950 0.95749 0.95043 0.94238 0.95309 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.11 -3.52 6.06 30.59 0.19 -3.33 16 3 C 0.06 2.45 3.57 86.30 0.31 2.76 16 4 N -0.53 -22.46 4.29 -875.38 -3.75 -26.22 16 5 C 0.06 2.08 4.52 86.30 0.39 2.47 16 6 C 0.10 3.35 2.69 44.94 0.12 3.48 16 7 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 8 C -0.14 -3.51 5.36 30.65 0.16 -3.35 16 9 C -0.11 -2.46 6.00 30.68 0.18 -2.28 16 10 C -0.15 -3.62 6.08 30.65 0.19 -3.43 16 11 C 0.07 2.12 6.55 86.32 0.57 2.69 16 12 N -0.66 -24.29 3.65 -491.69 -1.79 -26.08 16 13 C 0.17 8.28 1.78 44.17 0.08 8.36 16 14 H 0.13 6.57 3.40 -2.39 -0.01 6.56 16 15 C -0.50 -27.50 7.53 25.60 0.19 -27.31 16 16 H 0.02 1.44 6.58 -2.91 -0.02 1.42 16 17 C 0.04 2.17 4.58 84.65 0.39 2.55 16 18 N -0.89 -48.99 12.35 21.45 0.26 -48.73 16 19 Si 0.92 44.74 29.55 68.60 2.03 46.77 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 23 C -0.14 -6.00 4.55 30.59 0.14 -5.86 16 24 C -0.11 -4.87 9.07 71.98 0.65 -4.22 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.86 6.47 -2.38 -0.02 1.84 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 2.00 6.31 -2.39 -0.02 1.98 16 31 H 0.02 0.57 7.28 -2.39 -0.02 0.55 16 32 H 0.08 2.29 6.22 -2.39 -0.01 2.27 16 33 H 0.02 0.68 6.29 -2.39 -0.02 0.66 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.33 12.23 8.27 -89.69 -0.74 11.49 16 43 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 44 H 0.02 1.09 6.96 -2.39 -0.02 1.08 16 45 H 0.03 1.28 6.49 -2.39 -0.02 1.26 16 46 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 47 H 0.03 1.37 7.46 -2.39 -0.02 1.35 16 48 H 0.04 2.15 7.77 -2.39 -0.02 2.14 16 Total: -1.00 -57.88 351.22 1.18 -56.71 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.16 Total: 27.96 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 4.27 Total: -30.40 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -5.28 Total: -101.03 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -57.88 1.18 -56.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233101232.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.223 kcal (2) G-P(sol) polarization free energy of solvation -57.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds