Wall clock time and date at job start Mon Mar 30 2020 07:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 N 1.46891 * 109.47192 * 182.05499 * 3 2 1 5 5 C 1.46895 * 111.00379 * 72.49190 * 4 3 2 6 6 C 1.52998 * 109.47570 * 199.61288 * 5 4 3 7 7 H 1.09003 * 109.46121 * 295.11937 * 6 5 4 8 8 C 1.53034 * 109.46566 * 175.14248 * 6 5 4 9 9 C 1.53124 * 109.27999 * 180.79658 * 8 6 5 10 10 C 1.53109 * 109.15029 * 57.66458 * 9 8 6 11 11 C 1.53036 * 109.28400 * 302.34279 * 10 9 8 12 12 N 1.46843 * 109.46144 * 55.09662 * 6 5 4 13 13 C 1.46895 * 110.99943 * 196.45093 * 4 3 2 14 14 H 1.09001 * 109.47324 * 187.23710 * 13 4 3 15 15 C 1.50702 * 109.47085 * 307.23806 * 13 4 3 16 16 H 1.08000 * 120.00039 * 0.02562 * 15 13 4 17 17 C 1.37883 * 119.99997 * 179.97438 * 15 13 4 18 18 N 1.31519 * 119.99878 * 0.02562 * 17 15 13 19 19 Si 1.86791 * 119.99914 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47348 * 59.99943 * 19 17 15 21 21 H 1.48498 * 109.47304 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46911 * 299.99879 * 19 17 15 23 23 C 1.53007 * 109.47217 * 67.23817 * 13 4 3 24 24 C 1.53003 * 109.47035 * 63.58124 * 23 13 4 25 25 H 1.08997 * 109.47104 * 60.00045 * 1 2 3 26 26 H 1.09006 * 109.47283 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47312 * 299.99912 * 1 2 3 28 28 H 1.09001 * 109.46990 * 239.99707 * 2 1 3 29 29 H 1.08998 * 109.46662 * 119.99658 * 2 1 3 30 30 H 1.09001 * 109.46994 * 62.04966 * 3 2 1 31 31 H 1.09002 * 109.46582 * 302.05751 * 3 2 1 32 32 H 1.08996 * 109.47522 * 319.61809 * 5 4 3 33 33 H 1.09002 * 109.46872 * 79.61497 * 5 4 3 34 34 H 1.09002 * 109.49980 * 300.74343 * 8 6 5 35 35 H 1.08999 * 109.50354 * 60.86394 * 8 6 5 36 36 H 1.09007 * 109.52431 * 297.76433 * 9 8 6 37 37 H 1.08992 * 109.52209 * 177.57047 * 9 8 6 38 38 H 1.09011 * 109.50191 * 182.39871 * 10 9 8 39 39 H 1.09003 * 109.53832 * 62.30667 * 10 9 8 40 40 H 1.09007 * 109.45890 * 299.16525 * 11 10 9 41 41 H 1.08997 * 109.46407 * 179.19957 * 11 10 9 42 42 H 1.00898 * 111.00369 * 57.66211 * 12 6 5 43 43 H 0.96998 * 119.99680 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.46705 * 183.57558 * 23 13 4 45 45 H 1.08995 * 109.47205 * 303.57593 * 23 13 4 46 46 H 1.08995 * 109.47240 * 64.68595 * 24 23 13 47 47 H 1.08998 * 109.46620 * 184.69359 * 24 23 13 48 48 H 1.08999 * 109.46501 * 304.68643 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5081 1.4428 -0.0497 5 6 3.9900 1.0460 -1.3794 6 6 5.4457 0.5860 -1.2781 7 1 6.0725 1.4269 -0.9812 8 6 5.9099 0.0592 -2.6378 9 6 7.3605 -0.4184 -2.5266 10 6 7.4530 -1.4956 -1.4425 11 6 6.9440 -0.9240 -0.1173 12 7 5.5527 -0.4818 -0.2757 13 6 4.0476 2.7534 0.3364 14 1 5.1246 2.7668 0.1685 15 6 3.3963 3.8292 -0.4941 16 1 2.6553 3.5656 -1.2343 17 6 3.7456 5.1500 -0.3081 18 7 4.6475 5.4710 0.5936 19 14 2.9377 6.4834 -1.3370 20 1 1.4706 6.4646 -1.1081 21 1 3.4832 7.8083 -0.9468 22 1 3.2177 6.2372 -2.7745 23 6 3.7592 3.0076 1.8174 24 6 4.4938 1.9676 2.6658 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7070 1.9456 0.9078 31 1 1.6469 1.9668 -0.8710 32 1 3.3765 0.2292 -1.7594 33 1 3.9241 1.8962 -2.0583 34 1 5.2749 -0.7731 -2.9416 35 1 5.8451 0.8563 -3.3783 36 1 8.0014 0.4223 -2.2605 37 1 7.6813 -0.8342 -3.4817 38 1 8.4907 -1.8094 -1.3289 39 1 6.8428 -2.3528 -1.7274 40 1 7.5637 -0.0759 0.1742 41 1 6.9953 -1.6929 0.6535 42 1 4.9510 -1.2577 -0.5082 43 1 4.8929 6.4002 0.7247 44 1 4.1029 4.0059 2.0883 45 1 2.6869 2.9313 1.9970 46 1 5.5696 2.0985 2.5500 47 1 4.2227 2.0965 3.7136 48 1 4.2121 0.9669 2.3381 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300132824.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:36 Heat of formation + Delta-G solvation = -20.170206 kcal Electronic energy + Delta-G solvation = -22709.167433 eV Core-core repulsion = 19797.829385 eV Total energy + Delta-G solvation = -2911.338047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.84211 -37.07407 -33.61562 -32.46693 -31.43747 -31.26008 -30.07513 -26.57917 -25.95756 -24.00111 -23.03482 -22.28507 -20.95303 -20.38632 -20.00786 -18.62964 -16.20287 -15.36411 -14.94036 -14.76845 -14.53249 -14.48326 -14.02238 -13.84270 -13.65318 -12.99858 -12.71627 -12.58511 -12.11909 -11.93552 -11.78561 -11.64390 -11.49802 -11.28514 -11.08123 -11.02454 -10.85724 -10.75552 -10.68340 -10.49609 -10.33598 -10.30841 -10.06409 -10.00629 -9.58079 -9.47861 -9.16648 -8.87258 -8.25334 -7.70778 -6.88318 -5.89682 -4.03771 3.30348 3.35863 3.38317 4.44504 4.68235 4.88804 5.01333 5.19293 5.21616 5.32597 5.43643 5.56328 5.63732 5.65669 5.74886 5.79756 5.94601 5.95929 6.08053 6.13458 6.19405 6.22564 6.25751 6.32435 6.35445 6.40384 6.48801 6.52073 6.58748 6.69567 6.70531 6.79685 6.89011 6.95074 7.03692 7.32301 7.40470 7.54148 7.63064 7.74876 7.90152 7.95828 8.16820 8.30026 8.50118 8.66123 9.09618 9.63375 11.07652 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.007074 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.875050 B = 3957.319367 C = 4652.714422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.065 3.935 4 N -0.512 5.512 5 C 0.067 3.933 6 C 0.099 3.901 7 H 0.082 0.918 8 C -0.152 4.152 9 C -0.117 4.117 10 C -0.157 4.157 11 C 0.058 3.942 12 N -0.650 5.650 13 C 0.219 3.781 14 H 0.038 0.962 15 C -0.542 4.542 16 H 0.053 0.947 17 C 0.068 3.932 18 N -0.885 5.885 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.280 1.280 23 C -0.108 4.108 24 C -0.134 4.134 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.330 0.670 43 H 0.260 0.740 44 H 0.086 0.914 45 H 0.029 0.971 46 H 0.034 0.966 47 H 0.017 0.983 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 -12.242 -2.996 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.064 4.064 4 N -0.235 5.235 5 C -0.062 4.062 6 C -0.011 4.011 7 H 0.100 0.900 8 C -0.193 4.193 9 C -0.155 4.155 10 C -0.197 4.197 11 C -0.072 4.072 12 N -0.278 5.278 13 C 0.113 3.887 14 H 0.056 0.944 15 C -0.582 4.582 16 H 0.071 0.929 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.711 3.289 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.206 1.206 23 C -0.146 4.146 24 C -0.191 4.191 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.329 -11.966 -2.008 12.206 hybrid contribution -0.541 1.020 -2.154 2.444 sum 0.788 -10.946 -4.162 11.737 Atomic orbital electron populations 1.21740 0.97088 1.00422 1.01438 1.21557 0.93918 0.98616 1.01471 1.21910 0.89853 0.93799 1.00830 1.62321 1.05982 1.31469 1.23690 1.21946 0.93417 0.98378 0.92504 1.21555 0.97685 0.94273 0.87607 0.89979 1.22288 0.96039 1.00811 1.00115 1.21521 0.97207 0.98575 0.98166 1.22298 1.01173 0.98299 0.97904 1.22008 0.90869 0.99511 0.94857 1.60476 1.05710 1.12537 1.49069 1.19207 0.95220 0.82510 0.91782 0.94444 1.21809 1.23560 0.92450 1.20355 0.92881 1.24895 0.94911 0.98454 0.95110 1.69878 1.31429 1.17911 1.33109 0.86818 0.79830 0.81468 0.80803 1.20430 1.21337 1.20554 1.21559 0.97148 0.99738 0.96197 1.21665 0.99545 1.01078 0.96856 0.93365 0.93633 0.93000 0.93137 0.91882 0.91169 0.95717 0.93296 0.93865 0.92618 0.91716 0.91960 0.92796 0.92301 0.92565 0.91252 0.91482 0.85244 0.93009 0.89545 0.95270 0.94686 0.96417 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.84 6.03 -26.73 -0.16 -2.00 16 3 C 0.06 1.25 4.02 -3.83 -0.02 1.23 16 4 N -0.51 -10.29 3.37 -228.05 -0.77 -11.06 16 5 C 0.07 1.23 4.35 -3.83 -0.02 1.21 16 6 C 0.10 1.64 2.44 -67.73 -0.17 1.48 16 7 H 0.08 1.63 6.93 -51.93 -0.36 1.27 16 8 C -0.15 -2.12 5.36 -26.65 -0.14 -2.26 16 9 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 10 C -0.16 -1.80 6.08 -26.66 -0.16 -1.96 16 11 C 0.06 0.76 6.55 -3.84 -0.03 0.74 16 12 N -0.65 -9.83 6.23 -106.77 -0.67 -10.49 16 13 C 0.22 5.27 1.63 -68.86 -0.11 5.16 16 14 H 0.04 1.02 6.68 -51.93 -0.35 0.67 16 15 C -0.54 -14.33 6.99 -34.44 -0.24 -14.57 16 16 H 0.05 1.42 6.14 -52.49 -0.32 1.09 16 17 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 18 N -0.88 -24.90 11.30 55.43 0.63 -24.28 16 19 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -2.59 5.17 -26.73 -0.14 -2.73 16 24 C -0.13 -2.83 9.85 37.16 0.37 -2.46 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.76 6.51 -51.93 -0.34 0.42 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.47 5.95 -51.93 -0.31 1.16 16 31 H 0.02 0.51 6.71 -51.93 -0.35 0.17 16 32 H 0.05 0.82 6.26 -51.93 -0.32 0.49 16 33 H 0.04 0.91 7.00 -51.93 -0.36 0.54 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.33 4.65 8.79 -39.29 -0.35 4.30 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.09 2.33 5.98 -51.93 -0.31 2.02 16 45 H 0.03 0.69 6.20 -51.93 -0.32 0.37 16 46 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 1.23 7.58 -51.93 -0.39 0.83 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -26.50 354.45 -10.32 -36.82 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -9.14 Total: 5.16 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -0.70 Total: -17.67 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.81 Total: -45.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -26.50 -10.32 -36.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300132824.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.649 kcal (2) G-P(sol) polarization free energy of solvation -26.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds