Wall clock time and date at job start Mon Mar 30 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46904 * 109.47125 * 184.34864 * 3 2 1 5 5 C 1.46896 * 111.00236 * 68.86731 * 4 3 2 6 6 C 1.53006 * 109.46850 * 212.88501 * 5 4 3 7 7 H 1.08994 * 109.53911 * 303.41450 * 6 5 4 8 8 C 1.53116 * 109.50077 * 183.31840 * 6 5 4 9 9 C 1.53118 * 109.16267 * 182.40810 * 8 6 5 10 10 C 1.53032 * 109.28084 * 57.65121 * 9 8 6 11 11 N 1.46853 * 109.52512 * 300.82799 * 10 9 8 12 12 C 1.46844 * 111.19962 * 61.73726 * 11 10 9 13 13 C 1.46907 * 110.99964 * 192.82317 * 4 3 2 14 14 H 1.08996 * 109.46769 * 292.56042 * 13 4 3 15 15 C 1.50702 * 109.46950 * 52.55804 * 13 4 3 16 16 H 1.07995 * 119.99995 * 6.12137 * 15 13 4 17 17 C 1.37875 * 119.99693 * 186.11735 * 15 13 4 18 18 N 1.31517 * 120.00096 * 193.28555 * 17 15 13 19 19 Si 1.86798 * 120.00156 * 13.28822 * 17 15 13 20 20 H 1.48502 * 109.47190 * 94.44265 * 19 17 15 21 21 H 1.48496 * 109.47480 * 214.44588 * 19 17 15 22 22 H 1.48504 * 109.47059 * 334.44771 * 19 17 15 23 23 C 1.52996 * 109.46971 * 172.56108 * 13 4 3 24 24 C 1.52999 * 109.47091 * 304.88412 * 23 13 4 25 25 H 1.08993 * 109.47333 * 60.00165 * 1 2 3 26 26 H 1.09007 * 109.46762 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 299.99841 * 1 2 3 28 28 H 1.09002 * 109.47470 * 239.99924 * 2 1 3 29 29 H 1.09000 * 109.47692 * 119.99859 * 2 1 3 30 30 H 1.09000 * 109.47384 * 64.34908 * 3 2 1 31 31 H 1.09004 * 109.47096 * 304.34177 * 3 2 1 32 32 H 1.08999 * 109.47144 * 92.88784 * 5 4 3 33 33 H 1.08993 * 109.47177 * 332.88475 * 5 4 3 34 34 H 1.08997 * 109.52728 * 62.49773 * 8 6 5 35 35 H 1.09007 * 109.52153 * 302.31189 * 8 6 5 36 36 H 1.09001 * 109.50508 * 177.59680 * 9 8 6 37 37 H 1.09000 * 109.50233 * 297.67074 * 9 8 6 38 38 H 1.09001 * 109.46163 * 60.83924 * 10 9 8 39 39 H 1.09000 * 109.46702 * 180.81087 * 10 9 8 40 40 H 1.00907 * 110.99216 * 297.64092 * 11 10 9 41 41 H 1.08997 * 109.46116 * 58.27745 * 12 11 10 42 42 H 1.09000 * 109.45949 * 178.25660 * 12 11 10 43 43 H 0.96994 * 120.00149 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47455 * 64.88822 * 23 13 4 45 45 H 1.09003 * 109.46575 * 184.89028 * 23 13 4 46 46 H 1.09002 * 109.47441 * 62.35491 * 24 23 13 47 47 H 1.09005 * 109.47155 * 182.35081 * 24 23 13 48 48 H 1.09000 * 109.47400 * 302.35519 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5052 1.4439 -0.1050 5 6 3.9384 0.9824 -1.4306 6 6 5.2655 0.2320 -1.3008 7 1 6.0049 0.8782 -0.8277 8 6 5.7594 -0.1773 -2.6911 9 6 7.0559 -0.9792 -2.5479 10 6 6.8006 -2.1980 -1.6584 11 7 6.3307 -1.7536 -0.3400 12 6 5.0620 -1.0219 -0.4473 13 6 4.0532 2.7735 0.1947 14 1 3.7580 3.4728 -0.5875 15 6 3.5198 3.2493 1.5214 16 1 2.9219 2.5885 2.1313 17 6 3.7954 4.5283 1.9565 18 7 3.5626 4.8619 3.2072 19 14 4.4992 5.7873 0.7696 20 1 3.3943 6.5913 0.1881 21 1 5.4344 6.6836 1.4957 22 1 5.2284 5.0881 -0.3188 23 6 5.5798 2.6935 0.2577 24 6 5.9931 1.6235 1.2701 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7416 1.9334 0.9264 31 1 1.6144 1.9783 -0.8486 32 1 4.0694 1.8410 -2.0893 33 1 3.1836 0.3161 -1.8480 34 1 5.9470 0.7149 -3.2884 35 1 5.0032 -0.7917 -3.1800 36 1 7.3897 -1.3100 -3.5314 37 1 7.8237 -0.3519 -2.0951 38 1 6.0429 -2.8317 -2.1193 39 1 7.7253 -2.7634 -1.5427 40 1 7.0317 -1.1958 0.1245 41 1 4.3125 -1.6611 -0.9139 42 1 4.7242 -0.7328 0.5478 43 1 3.7561 5.7617 3.5132 44 1 5.9710 2.4335 -0.7259 45 1 5.9818 3.6590 0.5650 46 1 5.6265 0.6511 0.9411 47 1 7.0801 1.5953 1.3458 48 1 5.5670 1.8615 2.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300134288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:21 Heat of formation + Delta-G solvation = -1.789371 kcal Electronic energy + Delta-G solvation = -23006.581218 eV Core-core repulsion = 20096.040224 eV Total energy + Delta-G solvation = -2910.540995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38858 -37.23558 -34.06075 -32.75815 -31.67545 -30.99958 -30.79678 -26.91267 -25.93185 -23.88458 -23.43308 -22.66656 -21.51484 -20.25555 -19.92844 -18.90575 -16.56577 -15.92076 -15.67358 -14.76292 -14.63734 -14.47996 -14.26724 -13.80888 -13.47376 -13.38530 -13.11622 -12.67149 -12.46147 -12.19026 -12.13415 -11.85843 -11.67694 -11.42699 -11.29398 -11.07197 -10.95118 -10.87380 -10.73332 -10.54665 -10.48637 -10.20380 -10.06274 -9.97447 -9.85506 -9.73022 -9.22545 -8.86227 -8.46360 -8.12061 -7.26749 -6.08973 -4.02759 3.25324 3.35343 3.38085 4.41031 4.51453 4.66004 4.91442 5.05497 5.17653 5.23744 5.27808 5.45413 5.51190 5.62064 5.65111 5.71744 5.80427 5.85080 5.92181 5.99674 6.05780 6.08337 6.12385 6.14660 6.19144 6.25554 6.27997 6.32149 6.37597 6.41552 6.49729 6.54998 6.71130 6.76670 6.86392 6.89348 7.07657 7.13360 7.24606 7.26370 7.52153 7.59308 7.70217 8.01641 8.15665 8.67041 9.00797 9.56689 11.03462 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.007346 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.045026 B = 3810.562613 C = 4772.477738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.059 3.941 4 N -0.519 5.519 5 C 0.059 3.941 6 C -0.137 4.137 7 H 0.100 0.900 8 C -0.116 4.116 9 C -0.155 4.155 10 C 0.058 3.942 11 N -0.689 5.689 12 C 0.070 3.930 13 C 0.191 3.809 14 H -0.010 1.010 15 C -0.504 4.504 16 H 0.083 0.917 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.859 3.141 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.256 1.256 23 C -0.115 4.115 24 C -0.142 4.142 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.014 0.986 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.339 0.661 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.262 0.738 44 H 0.031 0.969 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.018 0.982 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -10.844 -10.385 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.069 4.069 4 N -0.242 5.242 5 C -0.070 4.070 6 C -0.157 4.157 7 H 0.117 0.883 8 C -0.154 4.154 9 C -0.195 4.195 10 C -0.073 4.073 11 N -0.317 5.317 12 C -0.059 4.059 13 C 0.083 3.917 14 H 0.008 0.992 15 C -0.542 4.542 16 H 0.101 0.899 17 C -0.126 4.126 18 N -0.530 5.530 19 Si 0.687 3.313 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.181 1.181 23 C -0.153 4.153 24 C -0.199 4.199 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.689 -11.633 -9.721 15.396 hybrid contribution 0.402 2.480 -1.752 3.063 sum 3.091 -9.153 -11.473 14.999 Atomic orbital electron populations 1.21725 0.96631 1.00712 1.01612 1.21580 0.94456 0.97963 1.01686 1.22121 0.87764 0.94930 1.02054 1.61854 1.08628 1.28622 1.25096 1.22072 0.95893 0.97602 0.91429 1.22373 0.99099 0.98778 0.95447 0.88264 1.21607 0.96700 0.99308 0.97760 1.22240 0.98052 0.98586 1.00603 1.21982 1.00103 0.95907 0.89259 1.60746 1.06822 1.45123 1.18994 1.22056 0.90677 0.91671 1.01479 1.19660 0.91272 0.84456 0.96278 0.99248 1.20899 1.33081 0.98385 1.01838 0.89920 1.24849 0.95062 0.98260 0.94448 1.69945 1.48985 1.19767 1.14346 0.87263 0.79355 0.82072 0.82645 1.20998 1.21394 1.18076 1.21983 0.97993 0.98627 0.96658 1.21846 0.96935 0.99907 1.01247 0.93422 0.93393 0.92596 0.93019 0.91546 0.88466 0.96741 0.95564 0.92279 0.92608 0.92509 0.92159 0.92174 0.91415 0.91444 0.84325 0.92204 0.88431 0.92782 0.95063 0.93223 0.91165 0.96337 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.15 0.37 -1.61 16 2 C -0.12 -1.80 6.00 -26.73 -0.16 -1.96 16 3 C 0.06 1.09 4.67 -3.82 -0.02 1.08 16 4 N -0.52 -9.86 2.90 -228.03 -0.66 -10.53 16 5 C 0.06 0.97 3.94 -3.82 -0.02 0.96 16 6 C -0.14 -1.99 1.55 -90.54 -0.14 -2.13 16 7 H 0.10 1.61 3.41 -51.93 -0.18 1.43 16 8 C -0.12 -1.44 5.29 -26.61 -0.14 -1.59 16 9 C -0.16 -1.71 6.08 -26.65 -0.16 -1.87 16 10 C 0.06 0.64 6.55 -3.83 -0.03 0.61 16 11 N -0.69 -8.92 6.87 -113.82 -0.78 -9.70 16 12 C 0.07 0.99 4.87 -3.83 -0.02 0.98 16 13 C 0.19 4.29 1.19 -68.86 -0.08 4.21 16 14 H -0.01 -0.24 6.56 -51.93 -0.34 -0.58 16 15 C -0.50 -13.27 6.97 -34.44 -0.24 -13.51 16 16 H 0.08 2.38 6.75 -52.49 -0.35 2.03 16 17 C 0.08 2.10 5.36 -17.82 -0.10 2.01 16 18 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 19 Si 0.86 20.99 25.77 -169.99 -4.38 16.61 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.26 -5.96 5.44 56.52 0.31 -5.66 16 23 C -0.11 -2.42 4.31 -26.73 -0.12 -2.53 16 24 C -0.14 -2.80 8.56 37.16 0.32 -2.48 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.74 6.35 -51.93 -0.33 0.41 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 2.08 5.76 -51.93 -0.30 1.78 16 31 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.03 0.46 7.68 -51.93 -0.40 0.06 16 33 H 0.06 0.90 5.98 -51.93 -0.31 0.59 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.34 4.36 8.86 -39.29 -0.35 4.01 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.60 6.10 -51.93 -0.32 1.28 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.03 0.60 5.66 -51.93 -0.29 0.31 16 45 H 0.05 1.13 5.00 -51.93 -0.26 0.87 16 46 H 0.07 1.26 3.05 -51.93 -0.16 1.10 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 1.55 7.30 -51.93 -0.38 1.17 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -27.27 336.95 -9.19 -36.46 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.69 Total: 5.57 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.53 Total: -17.84 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.67 Total: -45.87 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.38 Total: 16.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.27 -9.19 -36.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300134288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -27.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds