Wall clock time and date at job start Mon Mar 30 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 N 1.46904 * 109.47125 * 184.34864 * 3 2 1 5 5 C 1.46896 * 111.00236 * 68.86731 * 4 3 2 6 6 C 1.53006 * 109.46850 * 212.88501 * 5 4 3 7 7 H 1.08994 * 109.53911 * 303.41450 * 6 5 4 8 8 C 1.53116 * 109.50077 * 183.31840 * 6 5 4 9 9 C 1.53118 * 109.16267 * 182.40810 * 8 6 5 10 10 C 1.53032 * 109.28084 * 57.65121 * 9 8 6 11 11 N 1.46853 * 109.52512 * 300.82799 * 10 9 8 12 12 C 1.46844 * 111.19962 * 61.73726 * 11 10 9 13 13 C 1.46907 * 110.99964 * 192.82317 * 4 3 2 14 14 H 1.08996 * 109.46769 * 292.56042 * 13 4 3 15 15 C 1.50702 * 109.46950 * 52.55804 * 13 4 3 16 16 H 1.07995 * 119.99995 * 6.12137 * 15 13 4 17 17 C 1.37875 * 119.99693 * 186.11735 * 15 13 4 18 18 N 1.31517 * 120.00096 * 193.28555 * 17 15 13 19 19 Si 1.86798 * 120.00156 * 13.28822 * 17 15 13 20 20 H 1.48502 * 109.47190 * 94.44265 * 19 17 15 21 21 H 1.48496 * 109.47480 * 214.44588 * 19 17 15 22 22 H 1.48504 * 109.47059 * 334.44771 * 19 17 15 23 23 C 1.52996 * 109.46971 * 172.56108 * 13 4 3 24 24 C 1.52999 * 109.47091 * 304.88412 * 23 13 4 25 25 H 1.08993 * 109.47333 * 60.00165 * 1 2 3 26 26 H 1.09007 * 109.46762 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46997 * 299.99841 * 1 2 3 28 28 H 1.09002 * 109.47470 * 239.99924 * 2 1 3 29 29 H 1.09000 * 109.47692 * 119.99859 * 2 1 3 30 30 H 1.09000 * 109.47384 * 64.34908 * 3 2 1 31 31 H 1.09004 * 109.47096 * 304.34177 * 3 2 1 32 32 H 1.08999 * 109.47144 * 92.88784 * 5 4 3 33 33 H 1.08993 * 109.47177 * 332.88475 * 5 4 3 34 34 H 1.08997 * 109.52728 * 62.49773 * 8 6 5 35 35 H 1.09007 * 109.52153 * 302.31189 * 8 6 5 36 36 H 1.09001 * 109.50508 * 177.59680 * 9 8 6 37 37 H 1.09000 * 109.50233 * 297.67074 * 9 8 6 38 38 H 1.09001 * 109.46163 * 60.83924 * 10 9 8 39 39 H 1.09000 * 109.46702 * 180.81087 * 10 9 8 40 40 H 1.00907 * 110.99216 * 297.64092 * 11 10 9 41 41 H 1.08997 * 109.46116 * 58.27745 * 12 11 10 42 42 H 1.09000 * 109.45949 * 178.25660 * 12 11 10 43 43 H 0.96994 * 120.00149 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47455 * 64.88822 * 23 13 4 45 45 H 1.09003 * 109.46575 * 184.89028 * 23 13 4 46 46 H 1.09002 * 109.47441 * 62.35491 * 24 23 13 47 47 H 1.09005 * 109.47155 * 182.35081 * 24 23 13 48 48 H 1.09000 * 109.47400 * 302.35519 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5052 1.4439 -0.1050 5 6 3.9384 0.9824 -1.4306 6 6 5.2655 0.2320 -1.3008 7 1 6.0049 0.8782 -0.8277 8 6 5.7594 -0.1773 -2.6911 9 6 7.0559 -0.9792 -2.5479 10 6 6.8006 -2.1980 -1.6584 11 7 6.3307 -1.7536 -0.3400 12 6 5.0620 -1.0219 -0.4473 13 6 4.0532 2.7735 0.1947 14 1 3.7580 3.4728 -0.5875 15 6 3.5198 3.2493 1.5214 16 1 2.9219 2.5885 2.1313 17 6 3.7954 4.5283 1.9565 18 7 3.5626 4.8619 3.2072 19 14 4.4992 5.7873 0.7696 20 1 3.3943 6.5913 0.1881 21 1 5.4344 6.6836 1.4957 22 1 5.2284 5.0881 -0.3188 23 6 5.5798 2.6935 0.2577 24 6 5.9931 1.6235 1.2701 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7416 1.9334 0.9264 31 1 1.6144 1.9783 -0.8486 32 1 4.0694 1.8410 -2.0893 33 1 3.1836 0.3161 -1.8480 34 1 5.9470 0.7149 -3.2884 35 1 5.0032 -0.7917 -3.1800 36 1 7.3897 -1.3100 -3.5314 37 1 7.8237 -0.3519 -2.0951 38 1 6.0429 -2.8317 -2.1193 39 1 7.7253 -2.7634 -1.5427 40 1 7.0317 -1.1958 0.1245 41 1 4.3125 -1.6611 -0.9139 42 1 4.7242 -0.7328 0.5478 43 1 3.7561 5.7617 3.5132 44 1 5.9710 2.4335 -0.7259 45 1 5.9818 3.6590 0.5650 46 1 5.6265 0.6511 0.9411 47 1 7.0801 1.5953 1.3458 48 1 5.5670 1.8615 2.2448 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300134288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:20 Heat of formation + Delta-G solvation = -19.132849 kcal Electronic energy + Delta-G solvation = -23007.333288 eV Core-core repulsion = 20096.040224 eV Total energy + Delta-G solvation = -2911.293064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.66442 -38.57376 -35.63879 -34.38360 -33.15674 -32.27890 -32.04907 -28.68235 -27.25092 -25.42618 -24.59938 -24.16527 -22.64916 -21.61702 -21.08313 -20.60511 -18.55597 -17.34962 -16.81711 -16.24123 -16.11524 -15.82119 -15.47395 -15.27165 -14.95795 -14.60168 -14.53255 -14.39672 -13.93644 -13.45930 -13.36326 -13.02560 -12.98067 -12.84751 -12.67986 -12.66929 -12.34232 -12.26194 -12.10709 -11.96705 -11.88181 -11.70130 -11.60296 -11.40722 -11.25169 -11.11884 -10.98904 -10.69708 -10.48244 -9.17907 -8.81707 -8.25483 -6.21462 1.28351 1.33676 1.41437 2.34506 3.08172 3.22619 3.54592 3.89051 4.07547 4.12330 4.17961 4.24536 4.33041 4.39146 4.52301 4.52851 4.62788 4.64455 4.66607 4.70767 4.76591 4.79693 4.80920 4.91932 4.99348 5.03172 5.07471 5.13179 5.16297 5.20828 5.23006 5.27128 5.29012 5.34336 5.41819 5.50509 5.52988 5.55377 5.59360 5.79563 5.90950 6.13250 6.25850 6.48766 6.58688 6.80677 6.84841 7.41104 8.90601 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.016313 B = 0.007346 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.045026 B = 3810.562613 C = 4772.477738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.061 3.939 4 N -0.520 5.520 5 C 0.060 3.940 6 C -0.130 4.130 7 H 0.084 0.916 8 C -0.112 4.112 9 C -0.150 4.150 10 C 0.058 3.942 11 N -0.695 5.695 12 C 0.080 3.920 13 C 0.195 3.805 14 H -0.023 1.023 15 C -0.491 4.491 16 H 0.044 0.956 17 C 0.021 3.979 18 N -0.942 5.942 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.235 1.235 23 C -0.112 4.112 24 C -0.132 4.132 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.019 0.981 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.340 0.660 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.262 0.738 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -12.558 -13.247 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.068 4.068 4 N -0.243 5.243 5 C -0.069 4.069 6 C -0.151 4.151 7 H 0.102 0.898 8 C -0.150 4.150 9 C -0.189 4.189 10 C -0.072 4.072 11 N -0.323 5.323 12 C -0.049 4.049 13 C 0.087 3.913 14 H -0.005 1.005 15 C -0.529 4.529 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.582 5.582 19 Si 0.741 3.259 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.158 1.158 23 C -0.150 4.150 24 C -0.189 4.189 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.157 0.843 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.846 -13.371 -12.608 18.776 hybrid contribution -0.012 2.910 -0.843 3.030 sum 3.834 -10.461 -13.451 17.466 Atomic orbital electron populations 1.21702 0.95020 1.02167 1.01441 1.21465 0.95778 0.95250 1.01985 1.22076 0.87686 0.97076 0.99914 1.61843 1.08848 1.26327 1.27312 1.22175 0.97491 0.97745 0.89469 1.22271 0.97414 0.98335 0.97051 0.89811 1.21576 0.97723 0.99739 0.95991 1.22194 0.97021 0.98107 1.01584 1.22054 1.00878 0.96075 0.88151 1.60734 1.06392 1.44724 1.20420 1.21843 0.91566 0.91666 0.99844 1.19506 0.92421 0.85946 0.93475 1.00515 1.21072 1.31420 0.97603 1.02813 0.93742 1.25571 0.96057 1.00319 0.95717 1.70081 1.51530 1.20225 1.16379 0.86344 0.78770 0.79648 0.81146 1.21017 1.21431 1.15809 1.21918 0.96528 0.98217 0.98336 1.21749 0.98265 1.00293 0.98620 0.92668 0.91088 0.93761 0.91285 0.92488 0.92400 0.96795 0.96261 0.90563 0.92643 0.91592 0.90267 0.92537 0.91047 0.89928 0.84292 0.91737 0.91057 0.92903 0.92500 0.94950 0.89491 0.93965 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.11 -3.13 6.00 30.59 0.18 -2.95 16 3 C 0.06 2.27 4.67 86.30 0.40 2.67 16 4 N -0.52 -19.70 2.90 -875.36 -2.54 -22.24 16 5 C 0.06 1.84 3.94 86.31 0.34 2.18 16 6 C -0.13 -3.45 1.55 -10.74 -0.02 -3.47 16 7 H 0.08 2.50 3.41 -2.39 -0.01 2.49 16 8 C -0.11 -2.40 5.29 30.67 0.16 -2.24 16 9 C -0.15 -2.71 6.08 30.64 0.19 -2.53 16 10 C 0.06 1.07 6.55 86.32 0.57 1.64 16 11 N -0.69 -16.18 6.87 -514.01 -3.53 -19.71 16 12 C 0.08 2.10 4.87 86.33 0.42 2.52 16 13 C 0.19 8.81 1.19 44.17 0.05 8.86 16 14 H -0.02 -1.07 6.56 -2.39 -0.02 -1.09 16 15 C -0.49 -26.95 6.97 25.60 0.18 -26.77 16 16 H 0.04 2.74 6.75 -2.91 -0.02 2.72 16 17 C 0.02 1.19 5.36 84.65 0.45 1.65 16 18 N -0.94 -58.22 13.96 21.45 0.30 -57.93 16 19 Si 0.92 43.98 25.77 68.60 1.77 45.75 16 20 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 22 H -0.23 -10.38 5.44 99.48 0.54 -9.84 16 23 C -0.11 -4.63 4.31 30.59 0.13 -4.50 16 24 C -0.13 -5.15 8.56 71.98 0.62 -4.53 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.79 6.35 -2.39 -0.02 1.77 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.62 5.76 -2.39 -0.01 2.61 16 31 H 0.01 0.51 8.09 -2.38 -0.02 0.49 16 32 H 0.02 0.63 7.68 -2.39 -0.02 0.61 16 33 H 0.08 2.09 5.98 -2.39 -0.01 2.08 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.34 7.90 8.86 -89.69 -0.79 7.10 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 2.26 6.10 -2.39 -0.01 2.25 16 43 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.06 2.08 5.66 -2.39 -0.01 2.06 16 45 H 0.03 1.44 5.00 -2.39 -0.01 1.42 16 46 H 0.09 3.07 3.05 -2.39 -0.01 3.06 16 47 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.03 1.29 7.30 -2.39 -0.02 1.28 16 Total: -1.00 -61.25 336.95 0.36 -60.90 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: -0.03 Total: 23.64 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: 4.39 Total: -30.41 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -5.77 Total: -99.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.77 Total: 45.75 kcal Total: -61.25 0.36 -60.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300134288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.764 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds