Wall clock time and date at job start Mon Mar 30 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47426 * 2 1 4 4 N 1.46896 * 109.47406 * 182.35748 * 3 2 1 5 5 C 1.46894 * 111.00083 * 66.70863 * 4 3 2 6 6 C 1.52994 * 109.47315 * 72.10178 * 5 4 3 7 7 C 1.52999 * 109.47234 * 183.61980 * 6 5 4 8 8 C 1.53003 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47328 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99865 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00087 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99606 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99989 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00390 * 13 11 9 15 15 H 1.48500 * 109.47050 * 210.00290 * 13 11 9 16 16 H 1.48499 * 109.47238 * 330.00504 * 13 11 9 17 17 C 1.46905 * 110.99890 * 302.75243 * 4 3 2 18 18 C 1.53007 * 109.47134 * 291.41034 * 17 4 3 19 19 H 1.08995 * 110.01210 * 55.14175 * 18 17 4 20 20 C 1.54317 * 109.88395 * 294.02553 * 18 17 4 21 21 C 1.55138 * 103.01720 * 218.31105 * 20 18 17 22 22 C 1.54911 * 101.65475 * 35.65847 * 21 20 18 23 23 N 1.47443 * 109.88715 * 176.26064 * 18 17 4 24 24 H 1.09003 * 109.46602 * 59.99898 * 1 2 3 25 25 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47074 * 300.00364 * 1 2 3 27 27 H 1.08996 * 109.47074 * 239.99636 * 2 1 3 28 28 H 1.09003 * 109.46602 * 120.00102 * 2 1 3 29 29 H 1.09005 * 109.46829 * 62.35371 * 3 2 1 30 30 H 1.09004 * 109.46849 * 302.36141 * 3 2 1 31 31 H 1.09005 * 109.47267 * 192.10844 * 5 4 3 32 32 H 1.09006 * 109.46843 * 312.10211 * 5 4 3 33 33 H 1.08998 * 109.47427 * 303.62613 * 6 5 4 34 34 H 1.09005 * 109.47155 * 63.62406 * 6 5 4 35 35 H 1.08998 * 109.47430 * 300.00630 * 7 6 5 36 36 H 1.09002 * 109.47082 * 60.00481 * 7 6 5 37 37 H 1.08998 * 109.46794 * 300.00703 * 8 7 6 38 38 H 1.09002 * 109.46704 * 60.00174 * 8 7 6 39 39 H 0.96998 * 119.99468 * 179.97438 * 12 11 9 40 40 H 1.08996 * 109.47262 * 171.40527 * 17 4 3 41 41 H 1.09004 * 109.46991 * 51.40735 * 17 4 3 42 42 H 1.08997 * 110.71146 * 336.69563 * 20 18 17 43 43 H 1.09003 * 110.70694 * 99.93369 * 20 18 17 44 44 H 1.08994 * 110.99265 * 277.56440 * 21 20 18 45 45 H 1.09006 * 111.02250 * 153.76401 * 21 20 18 46 46 H 1.08995 * 110.37255 * 204.10342 * 22 21 20 47 47 H 1.09001 * 110.46661 * 81.80174 * 22 21 20 48 48 H 1.00909 * 110.99963 * 356.14349 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5079 1.4428 -0.0570 5 6 3.9850 0.9180 -1.3434 6 6 3.7107 1.9430 -2.4456 7 6 4.1249 1.3604 -3.7984 8 6 3.8512 2.3856 -4.9006 9 6 4.2585 1.8115 -6.2331 10 1 4.6710 0.8150 -6.2883 11 6 4.1037 2.5582 -7.3818 12 7 3.6010 3.7716 -7.3145 13 14 4.6093 1.8468 -9.0333 14 1 3.4563 1.1333 -9.6389 15 1 5.0402 2.9456 -9.9346 16 1 5.7334 0.8960 -8.8395 17 6 4.0785 0.6852 1.0649 18 6 3.8199 1.4372 2.3721 19 1 2.7535 1.6317 2.4859 20 6 4.5996 2.7690 2.3745 21 6 5.0802 2.8898 3.8446 22 6 5.3684 1.4104 4.2023 23 7 4.3095 0.6423 3.5133 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7116 1.9439 0.9104 30 1 1.6426 1.9683 -0.8681 31 1 5.0565 0.7271 -1.2831 32 1 3.4628 -0.0109 -1.5729 33 1 2.6474 2.1820 -2.4631 34 1 4.2836 2.8494 -2.2497 35 1 5.1882 1.1213 -3.7808 36 1 3.5519 0.4540 -3.9944 37 1 2.7879 2.6250 -4.9182 38 1 4.4244 3.2917 -4.7044 39 1 3.4924 4.2970 -8.1226 40 1 5.1524 0.5713 0.9175 41 1 3.6120 -0.2988 1.1134 42 1 5.4496 2.7192 1.6941 43 1 3.9440 3.5999 2.1139 44 1 4.2947 3.2992 4.4798 45 1 5.9867 3.4914 3.9115 46 1 5.3049 1.2613 5.2802 47 1 6.3514 1.1143 3.8361 48 1 4.6548 -0.2551 3.2073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385174479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:19 Heat of formation + Delta-G solvation = -25.972900 kcal Electronic energy + Delta-G solvation = -20993.220664 eV Core-core repulsion = 18081.630993 eV Total energy + Delta-G solvation = -2911.589671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.55958 -37.68512 -34.59637 -32.95684 -32.21034 -30.52650 -29.99413 -28.09108 -26.31471 -24.97081 -23.28334 -22.27359 -21.25951 -20.63882 -19.96242 -19.51697 -16.51211 -16.41903 -16.14486 -15.73023 -15.29913 -14.64633 -14.39043 -14.22184 -14.10686 -13.41023 -13.40179 -12.81828 -12.57500 -12.27171 -12.23950 -12.13116 -11.74278 -11.70810 -11.56420 -11.38208 -11.36386 -11.25800 -11.01183 -10.93707 -10.79660 -10.65518 -10.46646 -10.37779 -10.21881 -9.57285 -9.25074 -9.00094 -8.64430 -8.31307 -8.15952 -5.96388 -3.98509 3.33301 3.39372 3.42851 3.73938 4.24956 4.48759 4.56478 4.58968 4.65951 4.88188 4.92163 4.98396 5.21907 5.22816 5.26850 5.34117 5.38496 5.39239 5.47213 5.51749 5.63208 5.66386 5.72478 5.75433 5.81518 5.87171 5.96379 5.98891 6.00971 6.07029 6.17432 6.20524 6.26013 6.31593 6.56820 6.65437 6.85114 7.00227 7.06318 7.12989 7.17474 7.28562 7.72979 7.89304 8.05072 8.47897 9.09097 9.65224 11.14975 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003188 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.235297 B = 8780.948840 C = 9418.022531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C 0.050 3.950 4 N -0.529 5.529 5 C 0.052 3.948 6 C -0.110 4.110 7 C -0.109 4.109 8 C 0.022 3.978 9 C -0.520 4.520 10 H 0.053 0.947 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.035 3.965 18 C 0.080 3.920 19 H 0.084 0.916 20 C -0.123 4.123 21 C -0.134 4.134 22 C 0.044 3.956 23 N -0.681 5.681 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.014 0.986 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.041 0.959 48 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 -5.601 22.542 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C -0.078 4.078 4 N -0.252 5.252 5 C -0.075 4.075 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.015 4.015 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.095 4.095 18 C -0.029 4.029 19 H 0.102 0.898 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.085 4.085 23 N -0.310 5.310 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.059 0.941 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.819 -4.777 22.932 23.439 hybrid contribution 0.731 -1.315 -1.747 2.306 sum -0.087 -6.092 21.184 22.043 Atomic orbital electron populations 1.21662 0.95417 1.01473 1.01892 1.22179 0.96776 0.99363 1.02041 1.22318 0.87261 0.95339 1.02892 1.62206 1.07415 1.53412 1.02164 1.22299 0.99562 0.97100 0.88555 1.21621 1.01298 0.98095 0.93793 1.21600 0.99552 0.99724 0.93863 1.19077 0.96852 0.93777 0.91788 1.21293 1.41468 1.00916 0.92142 0.92828 1.25032 0.95422 0.94914 0.99166 1.69971 1.45430 1.09742 1.28405 0.86619 0.78849 0.78686 0.83991 1.20712 1.21228 1.19918 1.22725 0.99600 0.95616 0.91512 1.22267 1.00224 0.92678 0.87758 0.89835 1.22686 1.00288 0.97572 0.95588 1.22751 1.01357 0.95981 0.97145 1.22827 0.92957 0.93373 0.99328 1.62139 1.36712 1.05961 1.26232 0.92424 0.93035 0.92844 0.91629 0.91959 0.90914 0.90028 0.91540 0.94526 0.92529 0.91906 0.93629 0.93788 0.96765 0.96651 0.93062 0.91368 0.93966 0.91056 0.90612 0.90994 0.91059 0.90648 0.94094 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.16 -1.76 5.25 -26.73 -0.14 -1.90 16 3 C 0.05 0.58 5.00 -3.83 -0.02 0.56 16 4 N -0.53 -6.47 4.42 -234.63 -1.04 -7.51 16 5 C 0.05 0.73 4.86 -3.83 -0.02 0.71 16 6 C -0.11 -1.90 5.33 -26.73 -0.14 -2.04 16 7 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 8 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C 0.03 0.36 3.84 -3.82 -0.01 0.35 16 18 C 0.08 0.79 3.51 -66.72 -0.23 0.56 16 19 H 0.08 0.90 6.54 -51.93 -0.34 0.57 16 20 C -0.12 -1.21 6.25 -24.91 -0.16 -1.37 16 21 C -0.13 -1.13 7.08 -24.59 -0.17 -1.30 16 22 C 0.04 0.36 7.57 -2.30 -0.02 0.35 16 23 N -0.68 -6.27 7.37 -103.81 -0.77 -7.04 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.79 6.26 -51.93 -0.33 0.46 16 28 H 0.06 0.64 6.31 -51.93 -0.33 0.32 16 29 H 0.07 0.78 6.60 -51.93 -0.34 0.44 16 30 H 0.08 1.05 6.43 -51.93 -0.33 0.72 16 31 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 32 H 0.04 0.51 6.02 -51.93 -0.31 0.20 16 33 H 0.06 0.99 6.53 -51.93 -0.34 0.65 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 41 H 0.04 0.43 5.85 -51.93 -0.30 0.13 16 42 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.34 2.77 8.22 -39.29 -0.32 2.45 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -29.92 363.16 -11.04 -40.96 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -9.19 Total: -1.20 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -1.24 Total: -20.95 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: -1.07 Total: -41.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.92 -11.04 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.985 kcal (2) G-P(sol) polarization free energy of solvation -29.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds