Wall clock time and date at job start Mon Mar 30 2020 06:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47426 * 2 1 4 4 N 1.46896 * 109.47406 * 182.35748 * 3 2 1 5 5 C 1.46894 * 111.00083 * 66.70863 * 4 3 2 6 6 C 1.52994 * 109.47315 * 72.10178 * 5 4 3 7 7 C 1.52999 * 109.47234 * 183.61980 * 6 5 4 8 8 C 1.53003 * 109.47335 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47328 * 180.02562 * 8 7 6 10 10 H 1.07994 * 119.99865 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00087 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99606 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99989 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00390 * 13 11 9 15 15 H 1.48500 * 109.47050 * 210.00290 * 13 11 9 16 16 H 1.48499 * 109.47238 * 330.00504 * 13 11 9 17 17 C 1.46905 * 110.99890 * 302.75243 * 4 3 2 18 18 C 1.53007 * 109.47134 * 291.41034 * 17 4 3 19 19 H 1.08995 * 110.01210 * 55.14175 * 18 17 4 20 20 C 1.54317 * 109.88395 * 294.02553 * 18 17 4 21 21 C 1.55138 * 103.01720 * 218.31105 * 20 18 17 22 22 C 1.54911 * 101.65475 * 35.65847 * 21 20 18 23 23 N 1.47443 * 109.88715 * 176.26064 * 18 17 4 24 24 H 1.09003 * 109.46602 * 59.99898 * 1 2 3 25 25 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47074 * 300.00364 * 1 2 3 27 27 H 1.08996 * 109.47074 * 239.99636 * 2 1 3 28 28 H 1.09003 * 109.46602 * 120.00102 * 2 1 3 29 29 H 1.09005 * 109.46829 * 62.35371 * 3 2 1 30 30 H 1.09004 * 109.46849 * 302.36141 * 3 2 1 31 31 H 1.09005 * 109.47267 * 192.10844 * 5 4 3 32 32 H 1.09006 * 109.46843 * 312.10211 * 5 4 3 33 33 H 1.08998 * 109.47427 * 303.62613 * 6 5 4 34 34 H 1.09005 * 109.47155 * 63.62406 * 6 5 4 35 35 H 1.08998 * 109.47430 * 300.00630 * 7 6 5 36 36 H 1.09002 * 109.47082 * 60.00481 * 7 6 5 37 37 H 1.08998 * 109.46794 * 300.00703 * 8 7 6 38 38 H 1.09002 * 109.46704 * 60.00174 * 8 7 6 39 39 H 0.96998 * 119.99468 * 179.97438 * 12 11 9 40 40 H 1.08996 * 109.47262 * 171.40527 * 17 4 3 41 41 H 1.09004 * 109.46991 * 51.40735 * 17 4 3 42 42 H 1.08997 * 110.71146 * 336.69563 * 20 18 17 43 43 H 1.09003 * 110.70694 * 99.93369 * 20 18 17 44 44 H 1.08994 * 110.99265 * 277.56440 * 21 20 18 45 45 H 1.09006 * 111.02250 * 153.76401 * 21 20 18 46 46 H 1.08995 * 110.37255 * 204.10342 * 22 21 20 47 47 H 1.09001 * 110.46661 * 81.80174 * 22 21 20 48 48 H 1.00909 * 110.99963 * 356.14349 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5079 1.4428 -0.0570 5 6 3.9850 0.9180 -1.3434 6 6 3.7107 1.9430 -2.4456 7 6 4.1249 1.3604 -3.7984 8 6 3.8512 2.3856 -4.9006 9 6 4.2585 1.8115 -6.2331 10 1 4.6710 0.8150 -6.2883 11 6 4.1037 2.5582 -7.3818 12 7 3.6010 3.7716 -7.3145 13 14 4.6093 1.8468 -9.0333 14 1 3.4563 1.1333 -9.6389 15 1 5.0402 2.9456 -9.9346 16 1 5.7334 0.8960 -8.8395 17 6 4.0785 0.6852 1.0649 18 6 3.8199 1.4372 2.3721 19 1 2.7535 1.6317 2.4859 20 6 4.5996 2.7690 2.3745 21 6 5.0802 2.8898 3.8446 22 6 5.3684 1.4104 4.2023 23 7 4.3095 0.6423 3.5133 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.7116 1.9439 0.9104 30 1 1.6426 1.9683 -0.8681 31 1 5.0565 0.7271 -1.2831 32 1 3.4628 -0.0109 -1.5729 33 1 2.6474 2.1820 -2.4631 34 1 4.2836 2.8494 -2.2497 35 1 5.1882 1.1213 -3.7808 36 1 3.5519 0.4540 -3.9944 37 1 2.7879 2.6250 -4.9182 38 1 4.4244 3.2917 -4.7044 39 1 3.4924 4.2970 -8.1226 40 1 5.1524 0.5713 0.9175 41 1 3.6120 -0.2988 1.1134 42 1 5.4496 2.7192 1.6941 43 1 3.9440 3.5999 2.1139 44 1 4.2947 3.2992 4.4798 45 1 5.9867 3.4914 3.9115 46 1 5.3049 1.2613 5.2802 47 1 6.3514 1.1143 3.8361 48 1 4.6548 -0.2551 3.2073 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385174479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:18 Heat of formation + Delta-G solvation = -44.404225 kcal Electronic energy + Delta-G solvation = -20994.019906 eV Core-core repulsion = 18081.630993 eV Total energy + Delta-G solvation = -2912.388913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42649 -38.59112 -36.34091 -34.47450 -33.55678 -31.50354 -30.98779 -29.51186 -27.33269 -26.48094 -24.48781 -23.49821 -22.03338 -21.94467 -21.31292 -20.49253 -18.42088 -17.41079 -17.21307 -16.71446 -16.53083 -16.11270 -15.67122 -15.45414 -15.11274 -14.48225 -14.27854 -14.12726 -13.82357 -13.72804 -13.53806 -13.15112 -12.92278 -12.84241 -12.76550 -12.61620 -12.42937 -12.35553 -12.27472 -12.16883 -11.99881 -11.91456 -11.80016 -11.56513 -11.46446 -11.30169 -11.12376 -10.98190 -10.55838 -9.38322 -9.13055 -8.20247 -6.31847 1.38835 1.40589 1.51767 2.40324 2.83001 3.12386 3.46192 3.79804 3.82846 3.90560 3.94418 4.07275 4.17481 4.20593 4.29985 4.41993 4.45890 4.50594 4.54710 4.56863 4.63373 4.69928 4.73758 4.82030 4.87467 4.94971 5.01675 5.03183 5.05870 5.13235 5.18347 5.21463 5.23547 5.25132 5.29751 5.35307 5.41334 5.45233 5.56269 5.77635 5.86674 5.91432 6.13369 6.20506 6.26135 6.45252 6.85795 7.37494 8.91688 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024065 B = 0.003188 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.235297 B = 8780.948840 C = 9418.022531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.158 4.158 3 C 0.051 3.949 4 N -0.536 5.536 5 C 0.064 3.936 6 C -0.099 4.099 7 C -0.096 4.096 8 C 0.025 3.975 9 C -0.545 4.545 10 H 0.059 0.941 11 C -0.003 4.003 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.263 1.263 17 C 0.041 3.959 18 C 0.087 3.913 19 H 0.075 0.925 20 C -0.124 4.124 21 C -0.131 4.131 22 C 0.044 3.956 23 N -0.685 5.685 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.048 0.952 37 H -0.012 1.012 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -7.070 23.318 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C -0.076 4.076 4 N -0.259 5.259 5 C -0.064 4.064 6 C -0.137 4.137 7 C -0.134 4.134 8 C -0.012 4.012 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.200 4.200 12 N -0.575 5.575 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.207 1.207 16 H -0.187 1.187 17 C -0.088 4.088 18 C -0.023 4.023 19 H 0.093 0.907 20 C -0.163 4.163 21 C -0.169 4.169 22 C -0.085 4.085 23 N -0.316 5.316 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.066 0.934 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.259 -6.260 23.729 24.542 hybrid contribution 0.538 -0.809 -1.950 2.179 sum 0.279 -7.069 21.779 22.899 Atomic orbital electron populations 1.21652 0.94704 1.01999 1.01958 1.22099 0.97376 0.98444 1.01721 1.22297 0.86841 0.95946 1.02557 1.62125 1.07931 1.53934 1.01889 1.22063 1.00048 0.95879 0.88427 1.21433 1.00603 0.98459 0.93202 1.21399 0.99935 0.98221 0.93869 1.18998 0.94558 0.94241 0.93431 1.21744 1.41724 1.01374 0.93440 0.92228 1.26022 0.95176 0.95210 1.03621 1.70109 1.46363 1.11227 1.29777 0.85437 0.78923 0.78119 0.78516 1.19705 1.20660 1.18668 1.22704 0.99521 0.95668 0.90883 1.22142 0.99752 0.92673 0.87689 0.90656 1.22654 0.99783 0.97356 0.96478 1.22747 1.01754 0.96472 0.95938 1.22879 0.92960 0.92922 0.99740 1.62141 1.37362 1.06310 1.25775 0.93299 0.92279 0.91865 0.92905 0.91147 0.89948 0.91743 0.90930 0.94143 0.93110 0.92950 0.93144 0.93325 0.99382 0.99327 0.92771 0.91245 0.93360 0.91995 0.91476 0.90980 0.90118 0.89807 0.93440 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 2 C -0.16 -3.18 5.25 30.59 0.16 -3.02 16 3 C 0.05 1.15 5.00 86.30 0.43 1.58 16 4 N -0.54 -12.64 4.42 -896.22 -3.96 -16.60 16 5 C 0.06 1.73 4.86 86.30 0.42 2.15 16 6 C -0.10 -3.44 5.33 30.59 0.16 -3.28 16 7 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 8 C 0.02 1.36 4.97 29.85 0.15 1.50 16 9 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 10 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 11 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 12 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 13 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 17 C 0.04 0.79 3.84 86.30 0.33 1.12 16 18 C 0.09 1.59 3.51 45.26 0.16 1.75 16 19 H 0.08 1.52 6.54 -2.39 -0.02 1.51 16 20 C -0.12 -2.32 6.25 31.77 0.20 -2.13 16 21 C -0.13 -2.00 7.08 31.98 0.23 -1.77 16 22 C 0.04 0.63 7.57 86.77 0.66 1.29 16 23 N -0.69 -11.30 7.37 -482.36 -3.56 -14.85 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.21 6.26 -2.39 -0.01 1.19 16 28 H 0.07 1.32 6.31 -2.39 -0.02 1.30 16 29 H 0.08 1.69 6.60 -2.38 -0.02 1.68 16 30 H 0.06 1.67 6.43 -2.39 -0.02 1.65 16 31 H 0.07 1.90 7.77 -2.38 -0.02 1.88 16 32 H 0.04 1.08 6.02 -2.38 -0.01 1.07 16 33 H 0.05 1.81 6.53 -2.39 -0.02 1.80 16 34 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.07 1.34 7.71 -2.39 -0.02 1.32 16 41 H 0.05 0.89 5.85 -2.38 -0.01 0.88 16 42 H 0.06 1.28 7.79 -2.39 -0.02 1.26 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.34 4.92 8.22 -89.69 -0.74 4.18 16 Total: -1.00 -64.09 363.16 -0.58 -64.67 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.16 Total: 15.69 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.46 Total: -37.97 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -7.23 Total: -89.36 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.09 -0.58 -64.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.261 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds