Wall clock time and date at job start Mon Mar 30 2020 06:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 N 1.46896 * 109.47483 * 120.00228 * 2 1 3 5 5 C 1.46897 * 110.99896 * 291.86143 * 4 2 1 6 6 C 1.53003 * 109.47143 * 164.94299 * 5 4 2 7 7 C 1.53002 * 109.47042 * 185.29239 * 6 5 4 8 8 C 1.53003 * 109.47068 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47074 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00148 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00076 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00422 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99979 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47104 * 270.00302 * 13 11 9 15 15 H 1.48507 * 109.46946 * 29.99910 * 13 11 9 16 16 H 1.48496 * 109.47365 * 149.99579 * 13 11 9 17 17 C 1.46898 * 110.99967 * 167.90374 * 4 2 1 18 18 C 1.52997 * 109.47508 * 293.95320 * 17 4 2 19 19 H 1.09003 * 110.32670 * 65.80325 * 18 17 4 20 20 C 1.54903 * 110.37462 * 188.17286 * 18 17 4 21 21 C 1.55136 * 101.65410 * 155.90146 * 20 18 17 22 22 C 1.54325 * 103.01844 * 324.34760 * 21 20 18 23 23 N 1.47441 * 107.23149 * 22.28305 * 22 21 20 24 24 H 1.08999 * 109.46759 * 306.15813 * 1 2 3 25 25 H 1.08998 * 109.47639 * 66.15516 * 1 2 3 26 26 H 1.09000 * 109.46690 * 186.16207 * 1 2 3 27 27 H 1.09002 * 109.46875 * 240.00432 * 2 1 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46825 * 300.00242 * 3 2 1 30 30 H 1.09002 * 109.46947 * 60.00476 * 3 2 1 31 31 H 1.08996 * 109.47489 * 44.93806 * 5 4 2 32 32 H 1.09007 * 109.46828 * 284.93710 * 5 4 2 33 33 H 1.08994 * 109.47519 * 65.28700 * 6 5 4 34 34 H 1.09000 * 109.46652 * 305.28877 * 6 5 4 35 35 H 1.08994 * 109.47404 * 59.99391 * 7 6 5 36 36 H 1.09000 * 109.47101 * 299.99363 * 7 6 5 37 37 H 1.09002 * 109.47033 * 59.99896 * 8 7 6 38 38 H 1.09000 * 109.46962 * 299.99844 * 8 7 6 39 39 H 0.96992 * 119.99959 * 179.97438 * 12 11 9 40 40 H 1.09007 * 109.47212 * 53.95691 * 17 4 2 41 41 H 1.09007 * 109.47163 * 173.95176 * 17 4 2 42 42 H 1.09004 * 110.99380 * 273.99004 * 20 18 17 43 43 H 1.08999 * 110.99272 * 37.80539 * 20 18 17 44 44 H 1.08993 * 110.70938 * 205.96473 * 21 20 18 45 45 H 1.09005 * 110.70643 * 82.72310 * 21 20 18 46 46 H 1.08997 * 109.88385 * 262.87938 * 22 21 20 47 47 H 1.08997 * 110.02259 * 141.76234 * 22 21 20 48 48 H 1.00902 * 111.00121 * 123.25893 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.7138 0.0764 2.4130 6 6 1.8885 -0.8187 3.6415 7 6 1.4439 -0.0594 4.8932 8 6 1.6180 -0.9547 6.1216 9 6 1.1807 -0.2066 7.3545 10 1 0.8147 0.8060 7.2703 11 6 1.2477 -0.8149 8.5900 12 7 0.8656 -0.1623 9.6660 13 14 1.8813 -2.5661 8.7358 14 1 0.7468 -3.5154 8.6061 15 1 2.8699 -2.8261 7.6584 16 1 2.5312 -2.7490 10.0584 17 6 3.4595 -0.9660 1.0983 18 6 3.7102 -1.9694 -0.0292 19 1 3.4520 -1.5290 -0.9923 20 6 5.1894 -2.4293 -0.0229 21 6 5.0926 -3.8058 -0.7317 22 6 3.7394 -4.3577 -0.2360 23 7 2.9298 -3.2044 0.1979 24 1 -0.3633 0.6063 0.8297 25 1 -0.3634 0.4154 -0.9399 26 1 -0.3633 -1.0218 0.1103 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6851 0.4338 2.3671 32 1 2.3912 0.9275 2.4843 33 1 2.9369 -1.0997 3.7402 34 1 1.2811 -1.7164 3.5262 35 1 0.3954 0.2216 4.7945 36 1 2.0513 0.8383 5.0085 37 1 2.6664 -1.2361 6.2205 38 1 1.0103 -1.8522 6.0061 39 1 0.9125 -0.5904 10.5350 40 1 3.9914 -0.0388 0.8845 41 1 3.8175 -1.3812 2.0405 42 1 5.8148 -1.7407 -0.5910 43 1 5.5595 -2.5400 0.9964 44 1 5.9106 -4.4566 -0.4230 45 1 5.0848 -3.6819 -1.8147 46 1 3.9000 -5.0347 0.6030 47 1 3.2320 -4.8836 -1.0448 48 1 2.0509 -3.1729 -0.2967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395435096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:29 Heat of formation + Delta-G solvation = -17.787460 kcal Electronic energy + Delta-G solvation = -21372.640675 eV Core-core repulsion = 18461.405952 eV Total energy + Delta-G solvation = -2911.234724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.49535 -37.76997 -34.70529 -32.56574 -31.85965 -30.28540 -30.11064 -28.01620 -27.26974 -25.12020 -23.92620 -21.70697 -21.16244 -20.68824 -19.89029 -18.81451 -17.04048 -16.60815 -15.89706 -15.61153 -15.19486 -14.68919 -14.19181 -14.01531 -13.88824 -13.57551 -13.03058 -12.94089 -12.60825 -12.55573 -12.08950 -12.05189 -12.02230 -11.75294 -11.68301 -11.50516 -11.40188 -11.16869 -11.09529 -11.04161 -10.85106 -10.68025 -10.45782 -10.17968 -9.77707 -9.54253 -9.37652 -9.05514 -8.44992 -8.40629 -8.06378 -5.96147 -3.93113 3.38317 3.44834 3.50822 3.85003 4.15665 4.48057 4.53859 4.56542 4.78066 4.79699 4.97362 5.03262 5.15739 5.23971 5.28818 5.37084 5.38873 5.48215 5.52411 5.53776 5.57395 5.61861 5.67261 5.71395 5.80010 5.84564 5.86678 5.95301 6.01282 6.06026 6.14539 6.19794 6.23489 6.34354 6.55677 6.80135 6.85570 6.94399 7.04634 7.30348 7.32497 7.38100 7.46334 7.59009 7.90389 8.64020 9.09518 9.67474 11.17585 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.004179 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.767606 B = 6698.397814 C = 7837.016115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 C -0.187 4.187 4 N -0.518 5.518 5 C 0.055 3.945 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.013 4.013 9 C -0.518 4.518 10 H 0.070 0.930 11 C 0.064 3.936 12 N -0.907 5.907 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.265 1.265 16 H -0.289 1.289 17 C 0.066 3.934 18 C 0.083 3.917 19 H 0.045 0.955 20 C -0.126 4.126 21 C -0.143 4.143 22 C 0.045 3.955 23 N -0.660 5.660 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -3.573 -25.862 26.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.246 4.246 4 N -0.242 5.242 5 C -0.072 4.072 6 C -0.150 4.150 7 C -0.139 4.139 8 C -0.051 4.051 9 C -0.556 4.556 10 H 0.088 0.912 11 C -0.136 4.136 12 N -0.547 5.547 13 Si 0.708 3.292 14 H -0.203 1.203 15 H -0.189 1.189 16 H -0.215 1.215 17 C -0.062 4.062 18 C -0.027 4.027 19 H 0.063 0.937 20 C -0.165 4.165 21 C -0.181 4.181 22 C -0.084 4.084 23 N -0.290 5.290 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.055 -4.106 -24.942 25.993 hybrid contribution 0.697 0.018 -0.809 1.068 sum 6.752 -4.088 -25.751 26.934 Atomic orbital electron populations 1.21829 0.94402 1.02648 1.01155 1.21718 0.95885 0.92152 0.93837 1.22498 1.01186 0.98526 1.02399 1.62226 1.14541 1.45827 1.01559 1.22229 1.00634 0.94818 0.89532 1.21645 1.01171 0.98976 0.93179 1.21422 1.00075 0.98609 0.93826 1.19557 0.96320 0.95473 0.93706 1.21216 1.42594 1.01618 0.90162 0.91194 1.25044 0.94939 0.97829 0.95824 1.69924 1.48713 1.37536 0.98528 0.86765 0.79728 0.85469 0.77269 1.20306 1.18946 1.21539 1.22163 0.88531 0.96033 0.99514 1.22370 0.92356 0.91399 0.96533 0.93698 1.22735 0.95921 0.96238 1.01603 1.22781 0.98391 0.97163 0.99782 1.22619 0.92779 0.94242 0.98762 1.61578 1.05735 1.00667 1.61035 0.92446 0.92917 0.91673 0.90867 0.92885 0.92559 0.91922 0.90864 0.95217 0.92919 0.91521 0.93058 0.93325 0.96852 0.97076 0.92876 0.94996 0.89727 0.91177 0.90325 0.90891 0.91864 0.90892 0.93585 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.06 37.16 0.34 -1.07 16 2 C 0.07 0.74 2.79 -67.71 -0.19 0.55 16 3 C -0.19 -1.82 8.46 37.16 0.31 -1.51 16 4 N -0.52 -6.28 4.19 -226.64 -0.95 -7.23 16 5 C 0.06 0.78 3.65 -3.82 -0.01 0.76 16 6 C -0.11 -1.91 5.15 -26.73 -0.14 -2.04 16 7 C -0.10 -2.08 5.15 -26.73 -0.14 -2.22 16 8 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 9 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 10 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16 11 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 12 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 13 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 C 0.07 0.76 4.47 -3.83 -0.02 0.75 16 18 C 0.08 0.82 3.03 -66.19 -0.20 0.62 16 19 H 0.05 0.42 6.65 -51.93 -0.35 0.08 16 20 C -0.13 -1.11 6.49 -24.60 -0.16 -1.27 16 21 C -0.14 -1.13 6.94 -24.91 -0.17 -1.30 16 22 C 0.05 0.41 7.58 -2.83 -0.02 0.39 16 23 N -0.66 -7.01 6.84 -103.85 -0.71 -7.72 16 24 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.70 6.16 -51.93 -0.32 0.38 16 28 H 0.05 0.52 6.66 -51.93 -0.35 0.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 6.65 -51.93 -0.35 0.33 16 31 H 0.07 1.03 6.18 -51.93 -0.32 0.71 16 32 H 0.03 0.42 7.10 -51.92 -0.37 0.05 16 33 H 0.05 0.91 6.77 -51.93 -0.35 0.56 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 39 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 40 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 41 H 0.08 1.14 6.37 -51.93 -0.33 0.81 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.76 7.99 -51.93 -0.42 0.35 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.34 3.44 8.91 -39.29 -0.35 3.09 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.09 358.37 -10.28 -41.37 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -9.18 Total: -1.03 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -0.94 Total: -20.64 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.89 Total: -43.00 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.09 -10.28 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395435096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.578 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds