Wall clock time and date at job start Mon Mar 30 2020 06:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 N 1.46896 * 109.47483 * 120.00228 * 2 1 3 5 5 C 1.46897 * 110.99896 * 291.86143 * 4 2 1 6 6 C 1.53003 * 109.47143 * 164.94299 * 5 4 2 7 7 C 1.53002 * 109.47042 * 185.29239 * 6 5 4 8 8 C 1.53003 * 109.47068 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47074 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00148 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00076 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00422 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99979 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47104 * 270.00302 * 13 11 9 15 15 H 1.48507 * 109.46946 * 29.99910 * 13 11 9 16 16 H 1.48496 * 109.47365 * 149.99579 * 13 11 9 17 17 C 1.46898 * 110.99967 * 167.90374 * 4 2 1 18 18 C 1.52997 * 109.47508 * 293.95320 * 17 4 2 19 19 H 1.09003 * 110.32670 * 65.80325 * 18 17 4 20 20 C 1.54903 * 110.37462 * 188.17286 * 18 17 4 21 21 C 1.55136 * 101.65410 * 155.90146 * 20 18 17 22 22 C 1.54325 * 103.01844 * 324.34760 * 21 20 18 23 23 N 1.47441 * 107.23149 * 22.28305 * 22 21 20 24 24 H 1.08999 * 109.46759 * 306.15813 * 1 2 3 25 25 H 1.08998 * 109.47639 * 66.15516 * 1 2 3 26 26 H 1.09000 * 109.46690 * 186.16207 * 1 2 3 27 27 H 1.09002 * 109.46875 * 240.00432 * 2 1 3 28 28 H 1.09002 * 109.47064 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46825 * 300.00242 * 3 2 1 30 30 H 1.09002 * 109.46947 * 60.00476 * 3 2 1 31 31 H 1.08996 * 109.47489 * 44.93806 * 5 4 2 32 32 H 1.09007 * 109.46828 * 284.93710 * 5 4 2 33 33 H 1.08994 * 109.47519 * 65.28700 * 6 5 4 34 34 H 1.09000 * 109.46652 * 305.28877 * 6 5 4 35 35 H 1.08994 * 109.47404 * 59.99391 * 7 6 5 36 36 H 1.09000 * 109.47101 * 299.99363 * 7 6 5 37 37 H 1.09002 * 109.47033 * 59.99896 * 8 7 6 38 38 H 1.09000 * 109.46962 * 299.99844 * 8 7 6 39 39 H 0.96992 * 119.99959 * 179.97438 * 12 11 9 40 40 H 1.09007 * 109.47212 * 53.95691 * 17 4 2 41 41 H 1.09007 * 109.47163 * 173.95176 * 17 4 2 42 42 H 1.09004 * 110.99380 * 273.99004 * 20 18 17 43 43 H 1.08999 * 110.99272 * 37.80539 * 20 18 17 44 44 H 1.08993 * 110.70938 * 205.96473 * 21 20 18 45 45 H 1.09005 * 110.70643 * 82.72310 * 21 20 18 46 46 H 1.08997 * 109.88385 * 262.87938 * 22 21 20 47 47 H 1.08997 * 110.02259 * 141.76234 * 22 21 20 48 48 H 1.00902 * 111.00121 * 123.25893 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.7138 0.0764 2.4130 6 6 1.8885 -0.8187 3.6415 7 6 1.4439 -0.0594 4.8932 8 6 1.6180 -0.9547 6.1216 9 6 1.1807 -0.2066 7.3545 10 1 0.8147 0.8060 7.2703 11 6 1.2477 -0.8149 8.5900 12 7 0.8656 -0.1623 9.6660 13 14 1.8813 -2.5661 8.7358 14 1 0.7468 -3.5154 8.6061 15 1 2.8699 -2.8261 7.6584 16 1 2.5312 -2.7490 10.0584 17 6 3.4595 -0.9660 1.0983 18 6 3.7102 -1.9694 -0.0292 19 1 3.4520 -1.5290 -0.9923 20 6 5.1894 -2.4293 -0.0229 21 6 5.0926 -3.8058 -0.7317 22 6 3.7394 -4.3577 -0.2360 23 7 2.9298 -3.2044 0.1979 24 1 -0.3633 0.6063 0.8297 25 1 -0.3634 0.4154 -0.9399 26 1 -0.3633 -1.0218 0.1103 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6851 0.4338 2.3671 32 1 2.3912 0.9275 2.4843 33 1 2.9369 -1.0997 3.7402 34 1 1.2811 -1.7164 3.5262 35 1 0.3954 0.2216 4.7945 36 1 2.0513 0.8383 5.0085 37 1 2.6664 -1.2361 6.2205 38 1 1.0103 -1.8522 6.0061 39 1 0.9125 -0.5904 10.5350 40 1 3.9914 -0.0388 0.8845 41 1 3.8175 -1.3812 2.0405 42 1 5.8148 -1.7407 -0.5910 43 1 5.5595 -2.5400 0.9964 44 1 5.9106 -4.4566 -0.4230 45 1 5.0848 -3.6819 -1.8147 46 1 3.9000 -5.0347 0.6030 47 1 3.2320 -4.8836 -1.0448 48 1 2.0509 -3.1729 -0.2967 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395435096.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:28 Heat of formation + Delta-G solvation = -37.950637 kcal Electronic energy + Delta-G solvation = -21373.515016 eV Core-core repulsion = 18461.405952 eV Total energy + Delta-G solvation = -2912.109065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35484 -38.60268 -36.41615 -34.46116 -32.95121 -31.48272 -30.99068 -29.34183 -28.06005 -26.53893 -25.05419 -23.17222 -21.88316 -21.68377 -21.49885 -19.72730 -18.85260 -17.76880 -16.87215 -16.52428 -16.26053 -16.17919 -15.92320 -14.99608 -14.87908 -14.67167 -14.43777 -14.10620 -13.76944 -13.67596 -13.34934 -13.31513 -13.14773 -12.76837 -12.75998 -12.70638 -12.38279 -12.34155 -12.06925 -12.05097 -11.95717 -11.77179 -11.69447 -11.54281 -11.39892 -11.32650 -11.14536 -11.06395 -10.75673 -9.18692 -8.99428 -8.29305 -6.32985 1.35947 1.37353 1.50497 2.36965 2.94778 3.06035 3.38104 3.79043 3.84440 3.96826 4.11419 4.15757 4.17120 4.28622 4.31495 4.42748 4.49272 4.53787 4.60122 4.66337 4.70289 4.72132 4.78461 4.85286 4.88499 4.95929 4.99121 5.01401 5.03516 5.08279 5.10586 5.18525 5.23582 5.26049 5.30594 5.37627 5.38196 5.45716 5.61810 5.67191 5.70349 6.10093 6.28087 6.31217 6.41262 6.64534 6.74900 7.31866 8.87743 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.004179 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.767606 B = 6698.397814 C = 7837.016115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.523 5.523 5 C 0.065 3.935 6 C -0.097 4.097 7 C -0.093 4.093 8 C -0.010 4.010 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.003 3.997 12 N -0.953 5.953 13 Si 0.952 3.048 14 H -0.266 1.266 15 H -0.250 1.250 16 H -0.281 1.281 17 C 0.067 3.933 18 C 0.088 3.912 19 H 0.057 0.943 20 C -0.127 4.127 21 C -0.137 4.137 22 C 0.044 3.956 23 N -0.679 5.679 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.037 0.963 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 -4.950 -28.261 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.242 4.242 4 N -0.246 5.246 5 C -0.063 4.063 6 C -0.135 4.135 7 C -0.132 4.132 8 C -0.048 4.048 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.193 4.193 12 N -0.594 5.594 13 Si 0.775 3.225 14 H -0.191 1.191 15 H -0.173 1.173 16 H -0.207 1.207 17 C -0.061 4.061 18 C -0.022 4.022 19 H 0.074 0.926 20 C -0.165 4.165 21 C -0.175 4.175 22 C -0.085 4.085 23 N -0.310 5.310 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.975 -5.478 -27.366 28.767 hybrid contribution 0.363 0.535 -0.047 0.648 sum 7.338 -4.944 -27.413 28.805 Atomic orbital electron populations 1.21812 0.94174 1.02116 1.01676 1.21776 0.96005 0.92397 0.93161 1.22452 1.01138 0.98109 1.02515 1.62177 1.15107 1.45818 1.01523 1.22005 1.00705 0.94181 0.89400 1.21438 1.00654 0.98623 0.92812 1.21292 0.99925 0.98056 0.93881 1.19517 0.96030 0.95763 0.93468 1.21567 1.42581 1.00565 0.92472 0.95100 1.26036 0.95090 1.02942 0.95263 1.70071 1.50097 1.39870 0.99327 0.85632 0.79689 0.79252 0.77932 1.19070 1.17323 1.20696 1.22151 0.88068 0.96694 0.99209 1.22318 0.92960 0.90805 0.96084 0.92560 1.22743 0.95369 0.97191 1.01247 1.22761 0.97825 0.96500 1.00414 1.22618 0.93471 0.93703 0.98731 1.61522 1.06287 1.01402 1.61741 0.93650 0.91049 0.92337 0.89528 0.92878 0.91016 0.93244 0.90880 0.95246 0.93030 0.92194 0.93491 0.93761 0.96661 0.96669 0.92484 0.94459 0.91994 0.89717 0.91707 0.90294 0.90531 0.92221 0.92268 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.06 71.98 0.65 -1.86 16 2 C 0.07 1.36 2.79 44.92 0.13 1.48 16 3 C -0.18 -3.19 8.46 71.98 0.61 -2.58 16 4 N -0.52 -11.97 4.19 -870.97 -3.65 -15.62 16 5 C 0.06 1.77 3.65 86.30 0.32 2.09 16 6 C -0.10 -3.26 5.15 30.60 0.16 -3.10 16 7 C -0.09 -3.86 5.15 30.60 0.16 -3.70 16 8 C -0.01 -0.52 4.04 29.85 0.12 -0.39 16 9 C -0.53 -32.40 9.66 25.60 0.25 -32.15 16 10 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 11 C 0.00 0.19 5.47 84.65 0.46 0.65 16 12 N -0.95 -61.72 13.96 21.45 0.30 -61.42 16 13 Si 0.95 46.30 27.47 68.60 1.88 48.19 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 C 0.07 1.46 4.47 86.30 0.39 1.85 16 18 C 0.09 1.56 3.03 45.38 0.14 1.70 16 19 H 0.06 0.89 6.65 -2.39 -0.02 0.87 16 20 C -0.13 -1.98 6.49 31.98 0.21 -1.77 16 21 C -0.14 -1.84 6.94 31.78 0.22 -1.61 16 22 C 0.04 0.72 7.58 86.65 0.66 1.37 16 23 N -0.68 -13.33 6.84 -482.47 -3.30 -16.63 16 24 H 0.04 0.92 6.63 -2.39 -0.02 0.90 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.39 6.16 -2.39 -0.01 1.37 16 28 H 0.05 0.92 6.66 -2.39 -0.02 0.91 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.99 6.65 -2.39 -0.02 0.98 16 31 H 0.07 2.01 6.18 -2.39 -0.01 1.99 16 32 H 0.03 0.81 7.10 -2.38 -0.02 0.79 16 33 H 0.05 1.74 6.77 -2.39 -0.02 1.72 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.02 0.75 7.20 -2.39 -0.02 0.73 16 38 H 0.01 0.74 7.57 -2.39 -0.02 0.72 16 39 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 40 H 0.04 0.77 6.51 -2.38 -0.02 0.75 16 41 H 0.06 1.63 6.37 -2.38 -0.02 1.62 16 42 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.06 1.19 7.99 -2.39 -0.02 1.17 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.34 6.31 8.91 -89.69 -0.80 5.51 16 Total: -1.00 -67.33 358.37 -0.26 -67.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.05 Total: 15.93 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.46 Total: -38.03 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -6.65 Total: -93.67 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.88 Total: 48.19 kcal Total: -67.33 -0.26 -67.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395435096.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.642 kcal (2) G-P(sol) polarization free energy of solvation -67.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds