Wall clock time and date at job start Mon Mar 30 2020 09:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 5 5 C 1.46906 * 110.99888 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.47378 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47346 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46923 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99981 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99783 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46802 * 90.00490 * 13 11 9 15 15 H 1.48502 * 109.46977 * 209.99785 * 13 11 9 16 16 H 1.48498 * 109.47429 * 330.00156 * 13 11 9 17 17 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 18 18 C 1.53117 * 109.52116 * 179.68108 * 17 2 1 19 19 C 1.53039 * 109.28133 * 182.44037 * 18 17 2 20 20 N 1.46845 * 109.51946 * 59.17787 * 19 18 17 21 21 C 1.46905 * 110.99934 * 174.16319 * 20 19 18 22 22 C 1.46846 * 111.20408 * 298.25983 * 20 19 18 23 23 C 1.53037 * 109.51994 * 61.74128 * 22 20 19 24 24 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 25 25 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 26 26 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.00901 * 111.00121 * 151.04609 * 4 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 30 30 H 1.09004 * 109.46862 * 299.99897 * 6 5 4 31 31 H 1.09004 * 109.46998 * 59.99419 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00171 * 7 6 5 33 33 H 1.09000 * 109.46870 * 59.99782 * 7 6 5 34 34 H 1.08996 * 109.47407 * 300.00483 * 8 7 6 35 35 H 1.09000 * 109.46986 * 60.00254 * 8 7 6 36 36 H 0.96996 * 119.99725 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.52427 * 299.87534 * 17 2 1 38 38 H 1.09001 * 109.50636 * 302.38134 * 18 17 2 39 39 H 1.09001 * 109.50505 * 62.50346 * 18 17 2 40 40 H 1.09000 * 109.45813 * 299.17076 * 19 18 17 41 41 H 1.08993 * 109.46726 * 179.19512 * 19 18 17 42 42 H 1.09004 * 109.47163 * 184.21309 * 21 20 19 43 43 H 1.09000 * 109.47005 * 304.21184 * 21 20 19 44 44 H 1.08996 * 109.46898 * 64.21209 * 21 20 19 45 45 H 1.08997 * 109.46217 * 301.73216 * 22 20 19 46 46 H 1.08999 * 109.46761 * 181.75385 * 22 20 19 47 47 H 1.09005 * 109.50458 * 180.87874 * 23 22 20 48 48 H 1.09007 * 109.53540 * 60.78445 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6622 0.4202 4.7691 8 6 3.1754 -0.3355 5.9965 9 6 3.2397 0.6033 7.1736 10 1 2.9438 1.6355 7.0580 11 6 3.6765 0.1443 8.3983 12 7 4.0373 -1.1125 8.5390 13 14 3.7569 1.3081 9.8573 14 1 2.4634 1.2783 10.5861 15 1 4.8490 0.8834 10.7696 16 1 4.0224 2.6877 9.3760 17 6 2.0400 -0.7212 -1.2493 18 6 3.5711 -0.7150 -1.2545 19 6 4.0748 -1.3836 -2.5356 20 7 3.5605 -0.6568 -3.7033 21 6 4.1347 -1.1859 -4.9477 22 6 2.0930 -0.6896 -3.7453 23 6 1.5302 -0.0003 -2.5003 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9173 -1.1206 1.0286 28 1 2.7589 1.0461 2.1183 29 1 1.0870 0.6162 2.5525 30 1 1.9201 -1.3568 3.8029 31 1 3.5917 -0.9264 3.3682 32 1 3.3384 1.2438 4.5401 33 1 1.6669 0.8139 4.9752 34 1 2.4988 -1.1588 6.2254 35 1 4.1706 -0.7295 5.7907 36 1 4.3442 -1.4354 9.4006 37 1 1.6789 -1.7497 -1.2491 38 1 3.9310 0.3131 -1.2149 39 1 3.9403 -1.2640 -0.3882 40 1 3.7260 -2.4158 -2.5678 41 1 5.1646 -1.3680 -2.5492 42 1 3.7955 -0.5826 -5.7897 43 1 5.2226 -1.1500 -4.8898 44 1 3.8121 -2.2177 -5.0866 45 1 1.7536 -1.7251 -3.7718 46 1 1.7434 -0.1700 -4.6374 47 1 0.4411 -0.0386 -2.5240 48 1 1.8574 1.0393 -2.4799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396452447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:09:35 Heat of formation + Delta-G solvation = -32.585742 kcal Electronic energy + Delta-G solvation = -20593.257580 eV Core-core repulsion = 17681.381155 eV Total energy + Delta-G solvation = -2911.876425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.75720 -37.25439 -35.00057 -33.27976 -31.90389 -31.35340 -29.91356 -27.61922 -26.79157 -24.52485 -23.25359 -23.19907 -21.33018 -20.73000 -20.03254 -19.69287 -16.54079 -16.13189 -15.86131 -15.41846 -15.01870 -14.79819 -14.56351 -14.34478 -14.23754 -13.79753 -13.27953 -12.95301 -12.74085 -12.60220 -12.47020 -12.26749 -12.05898 -11.76164 -11.58318 -11.49135 -11.43627 -11.33649 -10.98729 -10.77246 -10.59045 -10.45794 -10.42676 -10.34243 -10.29326 -9.58700 -9.21251 -8.96291 -8.67272 -8.31428 -8.28613 -5.95037 -3.97043 3.34690 3.40558 3.44204 3.59525 4.15721 4.44696 4.49325 4.50119 4.62332 4.83187 4.97848 5.00532 5.11495 5.19001 5.25404 5.29724 5.33892 5.40309 5.46100 5.49477 5.51373 5.53223 5.58465 5.61658 5.72757 5.76624 5.80357 5.92673 5.94027 6.00218 6.14806 6.20061 6.30323 6.35553 6.57075 6.72344 6.74797 6.87684 7.01777 7.13339 7.29976 7.51499 7.74477 7.90757 8.06450 8.49407 9.10548 9.66569 11.16350 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.002546 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.064040 B =10995.738347 C =11405.987735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.042 0.958 4 N -0.689 5.689 5 C 0.060 3.940 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.274 1.274 17 C -0.089 4.089 18 C -0.118 4.118 19 C 0.057 3.943 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.056 3.944 23 C -0.111 4.111 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.338 0.662 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -0.071 -27.211 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 H 0.060 0.940 4 N -0.322 5.322 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.147 4.147 8 C -0.016 4.016 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.108 4.108 18 C -0.156 4.156 19 C -0.071 4.071 20 N -0.269 5.269 21 C -0.124 4.124 22 C -0.072 4.072 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.862 0.045 -26.866 27.143 hybrid contribution 0.648 0.229 0.594 0.908 sum -3.215 0.273 -26.272 26.470 Atomic orbital electron populations 1.21839 0.94767 1.02190 1.01085 1.21507 0.95820 0.95755 0.89026 0.94011 1.60613 1.33504 1.33801 1.04282 1.22101 1.00451 0.93686 0.90625 1.21633 1.00469 0.99262 0.93956 1.21584 1.00172 0.97721 0.95199 1.19091 0.96171 0.95418 0.90931 1.21297 1.43326 0.96462 0.94675 0.92784 1.25041 0.95547 0.95103 0.98903 1.69970 1.44835 1.14430 1.24358 0.86609 0.77642 0.81221 0.82613 1.20687 1.21255 1.19924 1.21363 0.95079 1.00236 0.94137 1.21706 0.95392 1.01835 0.96624 1.22073 0.99774 0.95028 0.90177 1.61932 1.07044 1.55306 1.02637 1.22350 1.00313 0.97670 0.92018 1.22100 0.87206 0.99039 0.98855 1.21672 1.00032 1.00180 0.93025 0.92700 0.92685 0.92165 0.84152 0.95688 0.91361 0.91719 0.92873 0.93714 0.93492 0.96637 0.96751 0.93073 0.90662 0.91083 0.91096 0.94821 0.90718 0.91421 0.91372 0.95780 0.94944 0.90861 0.90986 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.06 37.16 0.34 -1.10 16 2 C 0.09 0.95 2.23 -67.71 -0.15 0.80 16 3 H 0.04 0.48 7.80 -51.93 -0.41 0.07 16 4 N -0.69 -8.76 6.31 -106.73 -0.67 -9.44 16 5 C 0.06 0.88 5.48 -3.82 -0.02 0.86 16 6 C -0.12 -2.02 5.47 -26.74 -0.15 -2.17 16 7 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 8 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 13 Si 0.89 22.09 29.54 -169.99 -5.02 17.06 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 C -0.09 -0.81 1.98 -90.50 -0.18 -0.99 16 18 C -0.12 -1.07 5.09 -26.65 -0.14 -1.20 16 19 C 0.06 0.49 5.46 -3.83 -0.02 0.47 16 20 N -0.54 -4.65 4.91 -242.96 -1.19 -5.84 16 21 C 0.02 0.17 9.59 60.07 0.58 0.74 16 22 C 0.06 0.44 5.46 -3.83 -0.02 0.42 16 23 C -0.11 -0.89 4.95 -26.65 -0.13 -1.03 16 24 H 0.05 0.61 7.45 -51.93 -0.39 0.22 16 25 H 0.05 0.47 6.49 -51.93 -0.34 0.13 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.34 4.09 6.23 -39.29 -0.24 3.84 16 28 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 29 H 0.07 1.01 7.44 -51.93 -0.39 0.63 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.64 6.33 -51.93 -0.33 0.32 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 47 H 0.07 0.52 6.58 -51.93 -0.34 0.18 16 48 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -30.56 365.55 -10.79 -41.35 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -9.57 Total: -2.65 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.58 Total: -19.17 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -1.13 Total: -42.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.56 -10.79 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396452447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.769 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds