Wall clock time and date at job start Mon Mar 30 2020 09:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 N 1.46898 * 109.47140 * 120.00406 * 2 1 3 5 5 C 1.46906 * 110.99888 * 275.00023 * 4 2 1 6 6 C 1.52993 * 109.47378 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47346 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46923 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00202 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99981 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99783 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46802 * 90.00490 * 13 11 9 15 15 H 1.48502 * 109.46977 * 209.99785 * 13 11 9 16 16 H 1.48498 * 109.47429 * 330.00156 * 13 11 9 17 17 C 1.53002 * 109.46965 * 240.00115 * 2 1 3 18 18 C 1.53117 * 109.52116 * 179.68108 * 17 2 1 19 19 C 1.53039 * 109.28133 * 182.44037 * 18 17 2 20 20 N 1.46845 * 109.51946 * 59.17787 * 19 18 17 21 21 C 1.46905 * 110.99934 * 174.16319 * 20 19 18 22 22 C 1.46846 * 111.20408 * 298.25983 * 20 19 18 23 23 C 1.53037 * 109.51994 * 61.74128 * 22 20 19 24 24 H 1.08994 * 109.47134 * 299.99882 * 1 2 3 25 25 H 1.09006 * 109.47131 * 60.00086 * 1 2 3 26 26 H 1.09000 * 109.47000 * 179.97438 * 1 2 3 27 27 H 1.00901 * 111.00121 * 151.04609 * 4 2 1 28 28 H 1.09004 * 109.47040 * 299.99934 * 5 4 2 29 29 H 1.09000 * 109.47033 * 59.99886 * 5 4 2 30 30 H 1.09004 * 109.46862 * 299.99897 * 6 5 4 31 31 H 1.09004 * 109.46998 * 59.99419 * 6 5 4 32 32 H 1.08996 * 109.47261 * 300.00171 * 7 6 5 33 33 H 1.09000 * 109.46870 * 59.99782 * 7 6 5 34 34 H 1.08996 * 109.47407 * 300.00483 * 8 7 6 35 35 H 1.09000 * 109.46986 * 60.00254 * 8 7 6 36 36 H 0.96996 * 119.99725 * 180.02562 * 12 11 9 37 37 H 1.08995 * 109.52427 * 299.87534 * 17 2 1 38 38 H 1.09001 * 109.50636 * 302.38134 * 18 17 2 39 39 H 1.09001 * 109.50505 * 62.50346 * 18 17 2 40 40 H 1.09000 * 109.45813 * 299.17076 * 19 18 17 41 41 H 1.08993 * 109.46726 * 179.19512 * 19 18 17 42 42 H 1.09004 * 109.47163 * 184.21309 * 21 20 19 43 43 H 1.09000 * 109.47005 * 304.21184 * 21 20 19 44 44 H 1.08996 * 109.46898 * 64.21209 * 21 20 19 45 45 H 1.08997 * 109.46217 * 301.73216 * 22 20 19 46 46 H 1.08999 * 109.46761 * 181.75385 * 22 20 19 47 47 H 1.09005 * 109.50458 * 180.87874 * 23 22 20 48 48 H 1.09007 * 109.53540 * 60.78445 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5962 -0.5329 3.5741 7 6 2.6622 0.4202 4.7691 8 6 3.1754 -0.3355 5.9965 9 6 3.2397 0.6033 7.1736 10 1 2.9438 1.6355 7.0580 11 6 3.6765 0.1443 8.3983 12 7 4.0373 -1.1125 8.5390 13 14 3.7569 1.3081 9.8573 14 1 2.4634 1.2783 10.5861 15 1 4.8490 0.8834 10.7696 16 1 4.0224 2.6877 9.3760 17 6 2.0400 -0.7212 -1.2493 18 6 3.5711 -0.7150 -1.2545 19 6 4.0748 -1.3836 -2.5356 20 7 3.5605 -0.6568 -3.7033 21 6 4.1347 -1.1859 -4.9477 22 6 2.0930 -0.6896 -3.7453 23 6 1.5302 -0.0003 -2.5003 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 2.9173 -1.1206 1.0286 28 1 2.7589 1.0461 2.1183 29 1 1.0870 0.6162 2.5525 30 1 1.9201 -1.3568 3.8029 31 1 3.5917 -0.9264 3.3682 32 1 3.3384 1.2438 4.5401 33 1 1.6669 0.8139 4.9752 34 1 2.4988 -1.1588 6.2254 35 1 4.1706 -0.7295 5.7907 36 1 4.3442 -1.4354 9.4006 37 1 1.6789 -1.7497 -1.2491 38 1 3.9310 0.3131 -1.2149 39 1 3.9403 -1.2640 -0.3882 40 1 3.7260 -2.4158 -2.5678 41 1 5.1646 -1.3680 -2.5492 42 1 3.7955 -0.5826 -5.7897 43 1 5.2226 -1.1500 -4.8898 44 1 3.8121 -2.2177 -5.0866 45 1 1.7536 -1.7251 -3.7718 46 1 1.7434 -0.1700 -4.6374 47 1 0.4411 -0.0386 -2.5240 48 1 1.8574 1.0393 -2.4799 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396452447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:09:35 Heat of formation + Delta-G solvation = -51.404282 kcal Electronic energy + Delta-G solvation = -20594.073613 eV Core-core repulsion = 17681.381155 eV Total energy + Delta-G solvation = -2912.692459 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48289 -38.21214 -36.50145 -34.88611 -33.40807 -32.04845 -31.08281 -29.14995 -27.50050 -26.16219 -24.21419 -23.88998 -22.79956 -21.92738 -21.26728 -20.57570 -18.44114 -17.32939 -16.78531 -16.52970 -16.13261 -16.00795 -15.62023 -15.53841 -15.01581 -14.68644 -14.52919 -14.14699 -14.06430 -13.60513 -13.56344 -13.33437 -13.22248 -12.90605 -12.83309 -12.63413 -12.53336 -12.35956 -12.26689 -12.12888 -12.10092 -12.03013 -11.50947 -11.37142 -11.34473 -11.25405 -11.07606 -10.87114 -10.55557 -9.34720 -9.27655 -8.19986 -6.31492 1.39276 1.41192 1.52328 2.40831 2.99722 3.12552 3.17952 3.70452 3.78292 3.91268 4.12332 4.18627 4.21687 4.34564 4.35765 4.41172 4.52033 4.58973 4.59703 4.61460 4.66360 4.69502 4.77525 4.80498 4.86043 4.88958 4.93666 4.99868 5.01244 5.06356 5.09498 5.16492 5.21998 5.24889 5.29410 5.35829 5.43256 5.50708 5.55204 5.77885 5.86785 6.11275 6.14198 6.18712 6.25944 6.51256 6.85982 7.37695 8.91950 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038502 B = 0.002546 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.064040 B =10995.738347 C =11405.987735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.090 3.910 3 H 0.038 0.962 4 N -0.694 5.694 5 C 0.073 3.927 6 C -0.105 4.105 7 C -0.096 4.096 8 C 0.023 3.977 9 C -0.545 4.545 10 H 0.060 0.940 11 C -0.004 4.004 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.263 1.263 17 C -0.081 4.081 18 C -0.115 4.115 19 C 0.059 3.941 20 N -0.558 5.558 21 C 0.024 3.976 22 C 0.056 3.944 23 C -0.106 4.106 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.342 0.658 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.050 0.950 34 H -0.011 1.011 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.026 0.974 45 H 0.032 0.968 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 1.076 -28.182 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.056 0.944 4 N -0.327 5.327 5 C -0.057 4.057 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.014 4.014 9 C -0.583 4.583 10 H 0.078 0.922 11 C -0.201 4.201 12 N -0.575 5.575 13 Si 0.791 3.209 14 H -0.197 1.197 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.100 4.100 18 C -0.153 4.153 19 C -0.069 4.069 20 N -0.283 5.283 21 C -0.124 4.124 22 C -0.072 4.072 23 C -0.145 4.145 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.162 0.838 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.050 0.950 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.287 1.195 -27.861 28.214 hybrid contribution 0.789 -0.172 0.868 1.185 sum -3.498 1.024 -26.994 27.239 Atomic orbital electron populations 1.21830 0.94226 1.02041 1.01546 1.21553 0.96170 0.95484 0.88717 0.94392 1.60587 1.33866 1.33643 1.04645 1.21859 1.00281 0.93500 0.90021 1.21459 1.00467 0.98377 0.93975 1.21393 0.99969 0.97840 0.94261 1.19021 0.94371 0.94916 0.93109 1.21744 1.43582 0.97092 0.95847 0.92216 1.26039 0.94866 0.96926 1.02304 1.70106 1.45483 1.16493 1.25399 0.85420 0.78009 0.79071 0.78384 1.19695 1.20637 1.18697 1.21279 0.95010 0.99826 0.93922 1.21666 0.95402 1.01275 0.96989 1.22037 0.99975 0.94836 0.90028 1.61956 1.07537 1.55614 1.03153 1.22388 1.00510 0.97899 0.91554 1.22121 0.86870 0.99094 0.99078 1.21641 1.00677 0.99615 0.92520 0.93791 0.90704 0.92582 0.83771 0.95251 0.91329 0.92694 0.92922 0.93192 0.93158 0.99298 0.99196 0.92765 0.91150 0.91972 0.91373 0.94960 0.90415 0.90558 0.91045 0.95568 0.95005 0.89778 0.89890 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.06 71.98 0.65 -1.97 16 2 C 0.09 1.81 2.23 44.92 0.10 1.91 16 3 H 0.04 0.81 7.80 -2.39 -0.02 0.80 16 4 N -0.69 -17.02 6.31 -491.57 -3.10 -20.12 16 5 C 0.07 2.05 5.48 86.30 0.47 2.53 16 6 C -0.10 -3.67 5.47 30.59 0.17 -3.51 16 7 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 8 C 0.02 1.26 4.97 29.85 0.15 1.41 16 9 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 10 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 11 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 12 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 13 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C -0.08 -1.38 1.98 -10.71 -0.02 -1.40 16 18 C -0.12 -1.99 5.09 30.65 0.16 -1.84 16 19 C 0.06 0.94 5.46 86.33 0.47 1.42 16 20 N -0.56 -8.70 4.91 -922.59 -4.53 -13.23 16 21 C 0.02 0.29 9.59 127.69 1.22 1.52 16 22 C 0.06 0.77 5.46 86.33 0.47 1.25 16 23 C -0.11 -1.52 4.95 30.65 0.15 -1.37 16 24 H 0.04 0.92 7.45 -2.39 -0.02 0.91 16 25 H 0.07 1.10 6.49 -2.38 -0.02 1.09 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.34 7.99 6.23 -89.69 -0.56 7.43 16 28 H 0.03 0.81 8.06 -2.38 -0.02 0.79 16 29 H 0.07 1.95 7.44 -2.39 -0.02 1.94 16 30 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.20 6.33 -2.39 -0.02 1.18 16 40 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 42 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 44 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 47 H 0.08 1.01 6.58 -2.38 -0.02 0.99 16 48 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -65.14 365.55 -0.15 -65.29 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.32 Total: 14.51 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 4.85 Total: -35.58 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -7.35 Total: -91.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -65.14 -0.15 -65.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396452447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.887 kcal (2) G-P(sol) polarization free energy of solvation -65.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds