Wall clock time and date at job start Mon Mar 30 2020 08:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.33215 * 2 1 4 4 C 1.54905 * 110.46876 * 237.68086 * 2 1 3 5 5 C 1.55144 * 101.65300 * 204.05433 * 4 2 1 6 6 H 1.09001 * 110.70444 * 277.27104 * 5 4 2 7 7 C 1.53003 * 110.70232 * 154.21369 * 5 4 2 8 8 N 1.46904 * 109.46623 * 174.99988 * 7 5 4 9 9 C 1.46901 * 110.99932 * 179.97438 * 8 7 5 10 10 C 1.52991 * 109.47123 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47525 * 300.00406 * 10 9 8 12 12 C 1.53004 * 109.47413 * 60.00448 * 10 9 8 13 13 C 1.53001 * 109.47081 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47229 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00368 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00442 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99351 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00589 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47135 * 89.99913 * 18 16 14 20 20 H 1.48499 * 109.47549 * 210.00178 * 18 16 14 21 21 H 1.48505 * 109.46975 * 330.00313 * 18 16 14 22 22 C 1.54315 * 103.01994 * 35.65515 * 5 4 2 23 23 N 1.47451 * 107.23237 * 337.71369 * 22 5 4 24 24 C 1.46900 * 111.00124 * 236.74078 * 23 22 5 25 25 H 1.08998 * 109.47218 * 299.20058 * 1 2 3 26 26 H 1.09000 * 109.47325 * 59.19782 * 1 2 3 27 27 H 1.09004 * 109.47425 * 179.19819 * 1 2 3 28 28 H 1.09001 * 110.99033 * 322.14590 * 4 2 1 29 29 H 1.09001 * 110.99064 * 85.96168 * 4 2 1 30 30 H 1.09003 * 109.47080 * 294.99414 * 7 5 4 31 31 H 1.08994 * 109.47184 * 54.99958 * 7 5 4 32 32 H 1.00897 * 110.99907 * 303.94912 * 8 7 5 33 33 H 1.08993 * 109.47196 * 300.00193 * 9 8 7 34 34 H 1.09006 * 109.46657 * 59.99790 * 9 8 7 35 35 H 1.08995 * 109.47674 * 59.99722 * 11 10 9 36 36 H 1.09000 * 109.47499 * 180.02562 * 11 10 9 37 37 H 1.09011 * 109.46893 * 299.99867 * 11 10 9 38 38 H 1.08996 * 109.47196 * 59.99072 * 12 10 9 39 39 H 1.08994 * 109.47734 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.46565 * 299.99756 * 12 10 9 41 41 H 1.08997 * 109.47263 * 299.99888 * 13 10 9 42 42 H 1.09002 * 109.47267 * 60.00430 * 13 10 9 43 43 H 0.97003 * 119.99611 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.88796 * 218.31037 * 22 5 4 45 45 H 1.08996 * 109.89065 * 97.12213 * 22 5 4 46 46 H 1.08997 * 109.46899 * 180.84408 * 24 23 22 47 47 H 1.08993 * 109.46980 * 300.84480 * 24 23 22 48 48 H 1.09002 * 109.46683 * 60.84493 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0717 -0.7759 -1.2264 5 6 3.4812 -1.1968 -0.7334 6 1 4.1956 -0.3850 -0.8701 7 6 3.9535 -2.4585 -1.4588 8 7 5.3341 -2.7641 -1.0607 9 6 5.8221 -3.9726 -1.7386 10 6 7.2599 -4.2578 -1.3003 11 6 8.1510 -3.0704 -1.6703 12 6 7.2985 -4.4719 0.2142 13 6 7.7680 -5.5167 -2.0058 14 6 9.1840 -5.7980 -1.5737 15 1 9.6726 -5.1445 -0.8661 16 6 9.8559 -6.8897 -2.0814 17 7 9.2610 -7.6853 -2.9433 18 14 11.6108 -7.2388 -1.5452 19 1 11.5971 -8.1169 -0.3476 20 1 12.3398 -7.9163 -2.6474 21 1 12.2907 -5.9608 -1.2141 22 6 3.2550 -1.4778 0.7670 23 7 2.0446 -0.7396 1.1722 24 6 2.3331 0.1738 2.2859 25 1 -0.3633 0.5014 0.8970 26 1 -0.3634 0.5262 -0.8827 27 1 -0.3634 -1.0276 -0.0144 28 1 1.4554 -1.6494 -1.4391 29 1 2.1411 -0.1270 -2.0995 30 1 3.3056 -3.2940 -1.1938 31 1 3.9135 -2.2949 -2.5356 32 1 5.9434 -1.9794 -1.2369 33 1 5.1871 -4.8184 -1.4753 34 1 5.7950 -3.8199 -2.8176 35 1 7.7890 -2.1737 -1.1674 36 1 9.1755 -3.2737 -1.3584 37 1 8.1236 -2.9179 -2.7493 38 1 6.6637 -5.3177 0.4779 39 1 8.3229 -4.6746 0.5266 40 1 6.9365 -3.5752 0.7172 41 1 7.1331 -6.3625 -1.7417 42 1 7.7405 -5.3647 -3.0849 43 1 9.7336 -8.4536 -3.3003 44 1 4.1122 -1.1290 1.3429 45 1 3.1085 -2.5461 0.9263 46 1 1.4201 0.6945 2.5746 47 1 2.7102 -0.3963 3.1349 48 1 3.0832 0.9008 1.9745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396595845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:37 Heat of formation + Delta-G solvation = -21.865791 kcal Electronic energy + Delta-G solvation = -21190.468308 eV Core-core repulsion = 18279.056734 eV Total energy + Delta-G solvation = -2911.411573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.55233 -37.56955 -34.79424 -32.54181 -32.01662 -31.11255 -27.16625 -26.46035 -26.29494 -26.19547 -24.70954 -23.39348 -22.00620 -20.73001 -19.89811 -17.79083 -16.60181 -16.21760 -15.37567 -15.18901 -14.86457 -14.38795 -14.20150 -13.89168 -13.71218 -13.45958 -12.98853 -12.78871 -12.65062 -12.45187 -12.32330 -11.98332 -11.80730 -11.77830 -11.43264 -11.25800 -11.06796 -10.92383 -10.80283 -10.77677 -10.74732 -10.69688 -10.47221 -10.22925 -10.08846 -9.65887 -8.99376 -8.80849 -8.46853 -8.30245 -8.05153 -5.94844 -3.94841 3.34281 3.40747 3.43390 3.81388 4.24167 4.46169 4.49949 4.68361 4.82932 5.05065 5.16362 5.21953 5.24905 5.26813 5.40960 5.42859 5.48602 5.61099 5.64498 5.65254 5.70775 5.75226 5.79431 5.83285 5.91337 5.99523 6.04964 6.09731 6.27255 6.28616 6.36325 6.53208 6.68371 6.80747 6.84804 6.85617 6.94882 7.22974 7.25091 7.28470 7.42812 7.69138 7.73385 7.87889 8.05699 8.50187 9.10612 9.67847 11.16889 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.044022 B = 0.003093 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.892790 B = 9050.957283 C = 9332.561687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.066 3.934 3 H 0.051 0.949 4 C -0.120 4.120 5 C -0.105 4.105 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.686 5.686 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.058 3.942 23 N -0.535 5.535 24 C 0.022 3.978 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.336 0.664 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.259 0.741 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 16.213 5.236 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.042 4.042 3 H 0.069 0.931 4 C -0.159 4.159 5 C -0.124 4.124 6 H 0.089 0.911 7 C -0.061 4.061 8 N -0.318 5.318 9 C -0.058 4.058 10 C -0.059 4.059 11 C -0.186 4.186 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.069 4.069 23 N -0.259 5.259 24 C -0.127 4.127 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.155 0.845 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -15.544 15.370 5.892 22.640 hybrid contribution 1.792 0.590 -0.980 2.126 sum -13.752 15.960 4.912 21.633 Atomic orbital electron populations 1.21684 0.94074 1.02385 1.01014 1.22564 0.95955 0.95794 0.89897 0.93098 1.22799 0.95866 1.00309 0.96926 1.22370 0.96321 0.97855 0.95897 0.91051 1.21912 0.91497 0.96414 0.96240 1.60569 1.02083 1.07372 1.61736 1.22096 0.97315 0.91656 0.94739 1.20622 0.91223 0.97541 0.96480 1.21763 1.01008 0.96226 0.99566 1.21588 1.01096 0.99553 0.94996 1.19123 0.95807 0.90549 0.94919 1.21243 0.98355 1.09791 1.25065 0.92314 1.25021 0.97881 0.96430 0.95309 1.69971 1.37157 1.15793 1.30867 0.86663 0.85220 0.78368 0.78159 1.20772 1.21406 1.19966 1.22783 0.90324 0.99819 0.93967 1.63554 1.29596 1.25879 1.06865 1.22511 1.00089 0.95441 0.94678 0.92902 0.92600 0.91897 0.90330 0.91079 0.90883 0.95620 0.84526 0.91591 0.95998 0.94874 0.91752 0.94181 0.94183 0.92783 0.93929 0.96688 0.96961 0.93181 0.92530 0.89846 0.91793 0.91343 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.59 37.16 0.36 -0.71 16 2 C 0.07 0.60 3.05 -66.19 -0.20 0.40 16 3 H 0.05 0.46 7.77 -51.93 -0.40 0.05 16 4 C -0.12 -1.10 5.94 -24.59 -0.15 -1.25 16 5 C -0.10 -1.09 3.09 -88.79 -0.27 -1.37 16 6 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 7 C 0.07 0.84 5.03 -3.82 -0.02 0.82 16 8 N -0.69 -9.74 5.63 -113.78 -0.64 -10.38 16 9 C 0.07 1.22 4.65 -3.83 -0.02 1.20 16 10 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 11 C -0.13 -2.39 7.89 37.16 0.29 -2.09 16 12 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -13.92 7.65 -34.44 -0.26 -14.18 16 15 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 16 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 18 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 0.65 6.42 -2.83 -0.02 0.63 16 23 N -0.53 -5.58 5.10 -231.60 -1.18 -6.76 16 24 C 0.02 0.19 9.13 60.06 0.55 0.74 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.74 7.97 -51.93 -0.41 0.32 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.34 4.62 6.77 -39.29 -0.27 4.35 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 36 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 40 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 0.65 7.58 -51.93 -0.39 0.26 16 45 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 LS Contribution 364.68 15.07 5.50 5.50 Total: -1.00 -28.90 364.68 -9.84 -38.74 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -9.48 Total: -0.69 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 0.25 Total: -16.81 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -1.08 Total: -43.42 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.90 -9.84 -38.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396595845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.878 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds