Wall clock time and date at job start Mon Mar 30 2020 08:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.33215 * 2 1 4 4 C 1.54905 * 110.46876 * 237.68086 * 2 1 3 5 5 C 1.55144 * 101.65300 * 204.05433 * 4 2 1 6 6 H 1.09001 * 110.70444 * 277.27104 * 5 4 2 7 7 C 1.53003 * 110.70232 * 154.21369 * 5 4 2 8 8 N 1.46904 * 109.46623 * 174.99988 * 7 5 4 9 9 C 1.46901 * 110.99932 * 179.97438 * 8 7 5 10 10 C 1.52991 * 109.47123 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47525 * 300.00406 * 10 9 8 12 12 C 1.53004 * 109.47413 * 60.00448 * 10 9 8 13 13 C 1.53001 * 109.47081 * 179.97438 * 10 9 8 14 14 C 1.50698 * 109.47229 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00368 * 0.02562 * 14 13 10 16 16 C 1.37880 * 120.00442 * 180.02562 * 14 13 10 17 17 N 1.31516 * 119.99351 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00589 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47135 * 89.99913 * 18 16 14 20 20 H 1.48499 * 109.47549 * 210.00178 * 18 16 14 21 21 H 1.48505 * 109.46975 * 330.00313 * 18 16 14 22 22 C 1.54315 * 103.01994 * 35.65515 * 5 4 2 23 23 N 1.47451 * 107.23237 * 337.71369 * 22 5 4 24 24 C 1.46900 * 111.00124 * 236.74078 * 23 22 5 25 25 H 1.08998 * 109.47218 * 299.20058 * 1 2 3 26 26 H 1.09000 * 109.47325 * 59.19782 * 1 2 3 27 27 H 1.09004 * 109.47425 * 179.19819 * 1 2 3 28 28 H 1.09001 * 110.99033 * 322.14590 * 4 2 1 29 29 H 1.09001 * 110.99064 * 85.96168 * 4 2 1 30 30 H 1.09003 * 109.47080 * 294.99414 * 7 5 4 31 31 H 1.08994 * 109.47184 * 54.99958 * 7 5 4 32 32 H 1.00897 * 110.99907 * 303.94912 * 8 7 5 33 33 H 1.08993 * 109.47196 * 300.00193 * 9 8 7 34 34 H 1.09006 * 109.46657 * 59.99790 * 9 8 7 35 35 H 1.08995 * 109.47674 * 59.99722 * 11 10 9 36 36 H 1.09000 * 109.47499 * 180.02562 * 11 10 9 37 37 H 1.09011 * 109.46893 * 299.99867 * 11 10 9 38 38 H 1.08996 * 109.47196 * 59.99072 * 12 10 9 39 39 H 1.08994 * 109.47734 * 180.02562 * 12 10 9 40 40 H 1.09003 * 109.46565 * 299.99756 * 12 10 9 41 41 H 1.08997 * 109.47263 * 299.99888 * 13 10 9 42 42 H 1.09002 * 109.47267 * 60.00430 * 13 10 9 43 43 H 0.97003 * 119.99611 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.88796 * 218.31037 * 22 5 4 45 45 H 1.08996 * 109.89065 * 97.12213 * 22 5 4 46 46 H 1.08997 * 109.46899 * 180.84408 * 24 23 22 47 47 H 1.08993 * 109.46980 * 300.84480 * 24 23 22 48 48 H 1.09002 * 109.46683 * 60.84493 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0717 -0.7759 -1.2264 5 6 3.4812 -1.1968 -0.7334 6 1 4.1956 -0.3850 -0.8701 7 6 3.9535 -2.4585 -1.4588 8 7 5.3341 -2.7641 -1.0607 9 6 5.8221 -3.9726 -1.7386 10 6 7.2599 -4.2578 -1.3003 11 6 8.1510 -3.0704 -1.6703 12 6 7.2985 -4.4719 0.2142 13 6 7.7680 -5.5167 -2.0058 14 6 9.1840 -5.7980 -1.5737 15 1 9.6726 -5.1445 -0.8661 16 6 9.8559 -6.8897 -2.0814 17 7 9.2610 -7.6853 -2.9433 18 14 11.6108 -7.2388 -1.5452 19 1 11.5971 -8.1169 -0.3476 20 1 12.3398 -7.9163 -2.6474 21 1 12.2907 -5.9608 -1.2141 22 6 3.2550 -1.4778 0.7670 23 7 2.0446 -0.7396 1.1722 24 6 2.3331 0.1738 2.2859 25 1 -0.3633 0.5014 0.8970 26 1 -0.3634 0.5262 -0.8827 27 1 -0.3634 -1.0276 -0.0144 28 1 1.4554 -1.6494 -1.4391 29 1 2.1411 -0.1270 -2.0995 30 1 3.3056 -3.2940 -1.1938 31 1 3.9135 -2.2949 -2.5356 32 1 5.9434 -1.9794 -1.2369 33 1 5.1871 -4.8184 -1.4753 34 1 5.7950 -3.8199 -2.8176 35 1 7.7890 -2.1737 -1.1674 36 1 9.1755 -3.2737 -1.3584 37 1 8.1236 -2.9179 -2.7493 38 1 6.6637 -5.3177 0.4779 39 1 8.3229 -4.6746 0.5266 40 1 6.9365 -3.5752 0.7172 41 1 7.1331 -6.3625 -1.7417 42 1 7.7405 -5.3647 -3.0849 43 1 9.7336 -8.4536 -3.3003 44 1 4.1122 -1.1290 1.3429 45 1 3.1085 -2.5461 0.9263 46 1 1.4201 0.6945 2.5746 47 1 2.7102 -0.3963 3.1349 48 1 3.0832 0.9008 1.9745 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396595845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:47:37 Heat of formation + Delta-G solvation = -39.474331 kcal Electronic energy + Delta-G solvation = -21191.231871 eV Core-core repulsion = 18279.056734 eV Total energy + Delta-G solvation = -2912.175137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.37442 -39.06393 -36.10217 -34.40268 -32.89782 -32.15688 -29.05402 -27.89073 -27.62751 -26.98247 -26.02558 -24.66246 -23.54198 -21.53691 -20.71678 -19.42945 -18.33018 -17.38902 -16.69470 -16.47271 -16.08167 -15.74350 -15.31386 -14.94663 -14.81738 -14.71545 -14.31752 -14.10881 -13.88168 -13.68541 -13.33840 -13.25382 -13.13196 -12.79965 -12.78307 -12.64957 -12.43562 -12.26396 -12.15014 -12.13048 -12.04811 -11.88471 -11.72187 -11.58191 -11.51789 -11.35200 -10.85225 -10.69263 -10.50518 -9.27921 -9.21696 -8.14036 -6.21035 1.40805 1.41421 1.51890 2.43707 3.07413 3.19885 3.21387 3.69149 3.80311 3.95513 4.16219 4.22824 4.30163 4.39326 4.43361 4.47002 4.50921 4.53668 4.66237 4.71584 4.73495 4.82836 4.83938 4.95250 4.96996 4.97476 5.02085 5.03637 5.08737 5.11316 5.19248 5.22467 5.24119 5.42309 5.44465 5.52154 5.54459 5.59153 5.66344 5.88022 5.93157 6.06307 6.12908 6.21794 6.37359 6.55935 6.94280 7.46290 8.98437 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.044022 B = 0.003093 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.892790 B = 9050.957283 C = 9332.561687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 H 0.057 0.943 4 C -0.117 4.117 5 C -0.097 4.097 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.681 5.681 9 C 0.083 3.917 10 C -0.055 4.055 11 C -0.121 4.121 12 C -0.105 4.105 13 C 0.039 3.961 14 C -0.514 4.514 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.061 3.939 23 N -0.548 5.548 24 C 0.022 3.978 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.343 0.657 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.068 0.932 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.067 0.933 41 H -0.017 1.017 42 H -0.016 1.016 43 H 0.260 0.740 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 18.364 6.001 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.043 4.043 3 H 0.075 0.925 4 C -0.155 4.155 5 C -0.117 4.117 6 H 0.096 0.904 7 C -0.057 4.057 8 N -0.313 5.313 9 C -0.046 4.046 10 C -0.055 4.055 11 C -0.178 4.178 12 C -0.163 4.163 13 C 0.002 3.998 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.066 4.066 23 N -0.273 5.273 24 C -0.127 4.127 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.162 0.838 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -15.634 17.547 6.671 24.430 hybrid contribution 1.745 -0.073 -1.214 2.127 sum -13.889 17.474 5.456 22.979 Atomic orbital electron populations 1.21659 0.93239 1.02034 1.01863 1.22633 0.96605 0.95815 0.89227 0.92521 1.22795 0.94720 1.00451 0.97535 1.22285 0.97247 0.96941 0.95196 0.90417 1.21911 0.89910 0.97087 0.96754 1.60488 1.03219 1.06435 1.61164 1.21786 0.95384 0.92875 0.94540 1.20490 0.93126 0.95623 0.96310 1.21673 0.99626 0.96801 0.99729 1.21488 0.99947 1.00295 0.94541 1.19010 0.94926 0.92222 0.93646 1.21625 0.99240 1.09664 1.24639 0.91588 1.25933 1.02404 0.96424 0.95433 1.70115 1.39062 1.16481 1.32351 0.85571 0.79914 0.78610 0.77724 1.20153 1.21232 1.18618 1.22670 0.90601 0.98893 0.94459 1.63544 1.29218 1.26752 1.07759 1.22530 1.00722 0.95264 0.94144 0.92670 0.91147 0.92842 0.90756 0.89617 0.91666 0.95118 0.83766 0.92758 0.96546 0.91361 0.93526 0.94506 0.95264 0.94338 0.91369 0.99886 0.99810 0.93172 0.92921 0.91744 0.90759 0.91528 0.95404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.59 71.98 0.69 -1.11 16 2 C 0.07 1.04 3.05 45.38 0.14 1.18 16 3 H 0.06 0.86 7.77 -2.39 -0.02 0.84 16 4 C -0.12 -1.87 5.94 31.98 0.19 -1.68 16 5 C -0.10 -1.82 3.09 -9.61 -0.03 -1.85 16 6 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 7 C 0.07 1.65 5.03 86.30 0.43 2.09 16 8 N -0.68 -18.20 5.63 -513.89 -2.89 -21.09 16 9 C 0.08 2.86 4.65 86.30 0.40 3.26 16 10 C -0.06 -2.19 0.60 -52.18 -0.03 -2.22 16 11 C -0.12 -4.34 7.89 71.98 0.57 -3.77 16 12 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 13 C 0.04 2.07 4.04 29.85 0.12 2.19 16 14 C -0.51 -28.63 7.65 25.60 0.20 -28.43 16 15 H 0.07 3.52 5.68 -2.91 -0.02 3.51 16 16 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 17 N -0.94 -57.89 13.29 21.45 0.28 -57.60 16 18 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.06 1.29 6.42 86.64 0.56 1.85 16 23 N -0.55 -10.56 5.10 -886.66 -4.52 -15.08 16 24 C 0.02 0.35 9.13 127.69 1.17 1.52 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 1.27 7.97 -2.39 -0.02 1.25 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.60 7.95 -2.39 -0.02 1.58 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.34 8.47 6.77 -89.70 -0.61 7.86 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.07 1.96 6.57 -2.39 -0.02 1.94 16 36 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 37 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 40 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.05 1.13 7.58 -2.39 -0.02 1.11 16 45 H 0.06 1.59 7.70 -2.39 -0.02 1.57 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.03 0.43 8.09 -2.39 -0.02 0.41 16 Total: -1.00 -62.73 364.68 0.62 -62.11 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.28 Total: 15.20 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 5.44 Total: -30.29 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -7.13 Total: -93.77 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.73 0.62 -62.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396595845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.634 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds