Wall clock time and date at job start Mon Mar 30 2020 08:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.51914 * 2 1 4 4 C 1.53118 * 109.57578 * 239.83996 * 2 1 3 5 5 C 1.53032 * 109.27699 * 182.40886 * 4 2 1 6 6 H 1.08999 * 109.46528 * 299.15903 * 5 4 2 7 7 C 1.53002 * 109.46136 * 179.19326 * 5 4 2 8 8 N 1.46849 * 109.52470 * 59.17868 * 5 4 2 9 9 C 1.46901 * 111.00093 * 174.15809 * 8 5 4 10 10 C 1.53002 * 109.46961 * 190.49059 * 9 8 5 11 11 C 1.53003 * 109.46710 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46710 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46871 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99778 * 359.72041 * 15 13 12 18 18 H 1.48503 * 109.47305 * 270.27697 * 17 15 13 19 19 H 1.48498 * 109.47188 * 30.27875 * 17 15 13 20 20 H 1.48500 * 109.46886 * 150.28033 * 17 15 13 21 21 C 1.46848 * 111.19725 * 298.25529 * 8 5 4 22 22 C 1.53038 * 109.52187 * 61.74410 * 21 8 5 23 23 H 1.08999 * 109.50613 * 60.75661 * 22 21 8 24 24 C 1.52999 * 109.50378 * 180.84311 * 22 21 8 25 25 N 1.46908 * 109.46604 * 294.99651 * 24 22 21 26 26 H 1.09000 * 109.47473 * 299.87935 * 1 2 3 27 27 H 1.09002 * 109.47561 * 59.87582 * 1 2 3 28 28 H 1.08996 * 109.47164 * 179.87565 * 1 2 3 29 29 H 1.09004 * 109.50130 * 302.34663 * 4 2 1 30 30 H 1.08996 * 109.50429 * 62.46594 * 4 2 1 31 31 H 1.08998 * 109.47005 * 292.44471 * 7 5 4 32 32 H 1.08996 * 109.47178 * 52.44439 * 7 5 4 33 33 H 1.09005 * 109.47127 * 172.44573 * 7 5 4 34 34 H 1.09000 * 109.47060 * 70.49290 * 9 8 5 35 35 H 1.08995 * 109.47269 * 310.48994 * 9 8 5 36 36 H 1.09000 * 109.47045 * 60.00222 * 10 9 8 37 37 H 1.09003 * 109.46832 * 299.99796 * 10 9 8 38 38 H 1.09000 * 109.47336 * 60.00216 * 11 10 9 39 39 H 1.08995 * 109.47243 * 299.99766 * 11 10 9 40 40 H 1.09000 * 109.47045 * 60.00038 * 12 11 10 41 41 H 1.09000 * 109.47518 * 299.99889 * 12 11 10 42 42 H 0.97004 * 119.99581 * 179.71539 * 16 15 13 43 43 H 1.08994 * 109.46226 * 181.75285 * 21 8 5 44 44 H 1.08992 * 109.46233 * 301.72411 * 21 8 5 45 45 H 1.08993 * 109.47459 * 54.99211 * 24 22 21 46 46 H 1.08999 * 109.46968 * 175.00009 * 24 22 21 47 47 H 1.00898 * 110.99400 * 180.02562 * 25 24 22 48 48 H 1.00899 * 110.99664 * 303.95393 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7735 -1.2103 6 1 3.9678 0.2421 -1.2047 7 6 4.0886 -1.5148 -2.4452 8 7 4.0115 -1.4766 0.0017 9 6 5.4685 -1.6642 0.0025 10 6 5.8593 -2.6174 1.1337 11 6 7.3769 -2.8122 1.1349 12 6 7.7678 -3.7650 2.2664 13 6 9.2626 -3.9564 2.2680 14 1 9.8728 -3.4496 1.5351 15 6 9.8513 -4.7794 3.2047 16 7 11.1557 -4.9469 3.2057 17 14 8.7966 -5.6510 4.4765 18 1 8.6561 -4.7892 5.6777 19 1 7.4541 -5.9238 3.9033 20 1 9.4411 -6.9328 4.8595 21 6 3.5708 -0.7729 1.2129 22 6 2.0417 -0.7242 1.2483 23 1 1.6455 -1.7395 1.2679 24 6 1.5833 0.0273 2.4997 25 7 1.9754 -0.7294 3.6963 26 1 -0.3634 0.5119 0.8910 27 1 -0.3634 0.5158 -0.8889 28 1 -0.3633 -1.0276 -0.0022 29 1 1.6469 -1.7402 -1.2669 30 1 1.7174 -0.1893 -2.1391 31 1 3.8045 -2.5653 -2.3835 32 1 3.6544 -1.0731 -3.3421 33 1 5.1747 -1.4340 -2.4895 34 1 5.9586 -0.7022 0.1525 35 1 5.7811 -2.0862 -0.9526 36 1 5.3693 -3.5794 0.9837 37 1 5.5468 -2.1953 2.0888 38 1 7.8667 -1.8501 1.2851 39 1 7.6898 -3.2341 0.1798 40 1 7.2780 -4.7272 2.1167 41 1 7.4550 -3.3427 3.2214 42 1 11.5702 -5.5227 3.8673 43 1 3.9377 -1.3006 2.0932 44 1 3.9666 0.2426 1.2072 45 1 2.0499 1.0120 2.5235 46 1 0.4993 0.1392 2.4796 47 1 1.6834 -0.2536 4.5367 48 1 1.6080 -1.6687 3.6666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397414742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:40 Heat of formation + Delta-G solvation = -32.439073 kcal Electronic energy + Delta-G solvation = -21394.909128 eV Core-core repulsion = 18483.039062 eV Total energy + Delta-G solvation = -2911.870065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89229 -36.44394 -34.88829 -33.70615 -32.29527 -31.63773 -29.47600 -27.65857 -27.15599 -24.64095 -23.89784 -22.26013 -21.09632 -20.12194 -19.96504 -19.72415 -16.59123 -16.29287 -15.86568 -15.13024 -15.06251 -14.81043 -14.53401 -14.20859 -14.00433 -13.70889 -13.15700 -12.98096 -12.79072 -12.58716 -12.31944 -12.24340 -11.91919 -11.89157 -11.68511 -11.57903 -11.46909 -11.04115 -10.91517 -10.74435 -10.69447 -10.48215 -10.27218 -10.07475 -9.73307 -9.55680 -9.37514 -9.06367 -8.80368 -8.45480 -8.15562 -5.96534 -3.93539 3.37716 3.44267 3.50064 3.91658 4.26237 4.53076 4.53328 4.58974 4.74640 4.83909 5.08458 5.16358 5.24003 5.25913 5.36913 5.38006 5.42096 5.46101 5.48388 5.53920 5.60124 5.64498 5.73585 5.79268 5.82807 5.86485 5.96110 5.97902 6.04069 6.14354 6.15424 6.22587 6.33258 6.35681 6.54072 6.78922 6.90203 6.93339 7.03561 7.22134 7.30061 7.32544 7.44826 7.57781 7.89704 8.63557 9.09164 9.66937 11.17189 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003868 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.042153 B = 7236.521322 C = 8205.842563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.103 4.103 5 C 0.080 3.920 6 H 0.034 0.966 7 C -0.149 4.149 8 N -0.535 5.535 9 C 0.053 3.947 10 C -0.115 4.115 11 C -0.101 4.101 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.907 5.907 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.265 1.265 20 H -0.289 1.289 21 C 0.066 3.934 22 C -0.076 4.076 23 H 0.076 0.924 24 C 0.065 3.935 25 N -0.849 5.849 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.094 0.906 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.029 0.971 47 H 0.340 0.660 48 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.100 11.162 -6.912 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.029 4.029 6 H 0.052 0.948 7 C -0.206 4.206 8 N -0.260 5.260 9 C -0.074 4.074 10 C -0.153 4.153 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.088 0.912 15 C -0.137 4.137 16 N -0.547 5.547 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.189 1.189 20 H -0.215 1.215 21 C -0.061 4.061 22 C -0.096 4.096 23 H 0.095 0.905 24 C -0.066 4.066 25 N -0.378 5.378 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.152 0.848 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.423 10.730 -7.089 26.722 hybrid contribution -0.999 0.315 0.944 1.410 sum -24.422 11.045 -6.145 27.499 Atomic orbital electron populations 1.21877 0.95349 1.01813 1.01423 1.21193 0.95340 0.99283 0.95034 0.91636 1.21660 0.94499 1.01110 0.96840 1.21581 0.95065 0.95415 0.90804 0.94756 1.21922 1.01143 1.01384 0.96165 1.61996 1.13358 1.49271 1.01365 1.22267 0.85951 0.98534 1.00659 1.21695 0.97557 0.98954 0.97115 1.21417 0.92380 0.99985 1.00129 1.19561 0.97105 0.94618 0.93788 1.21211 0.90740 1.27675 1.15968 0.91177 1.25051 0.94812 0.96316 0.97500 1.69929 1.09441 1.39113 1.36193 0.86759 0.81213 0.79161 0.82061 1.20339 1.18923 1.21519 1.22077 0.93953 0.96446 0.93665 1.21216 0.95959 0.99580 0.92811 0.90524 1.21882 0.97188 0.97449 0.90090 1.58647 1.68488 1.06572 1.04137 0.92687 0.92840 0.92647 0.91079 0.91847 0.91572 0.92556 0.92306 0.95368 0.90484 0.91863 0.92417 0.93210 0.92997 0.96698 0.97178 0.92870 0.88828 0.95706 0.91388 0.95282 0.84813 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.91 37.16 0.33 -0.73 16 2 C -0.09 -0.78 2.29 -90.50 -0.21 -0.99 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.10 -0.96 4.66 -26.65 -0.12 -1.08 16 5 C 0.08 0.88 2.44 -67.72 -0.17 0.71 16 6 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 7 C -0.15 -1.53 8.53 37.16 0.32 -1.21 16 8 N -0.54 -6.95 4.49 -226.70 -1.02 -7.97 16 9 C 0.05 0.78 4.69 -3.82 -0.02 0.76 16 10 C -0.12 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.10 -2.09 5.15 -26.73 -0.14 -2.23 16 12 C -0.01 -0.33 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.36 9.66 -34.44 -0.33 -15.70 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.91 -28.81 13.96 55.43 0.77 -28.04 16 17 Si 0.88 22.51 27.46 -169.99 -4.67 17.84 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.26 -6.53 6.55 56.52 0.37 -6.16 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C 0.07 0.83 4.46 -3.83 -0.02 0.81 16 22 C -0.08 -0.76 1.99 -90.54 -0.18 -0.94 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 C 0.07 0.57 6.00 -3.82 -0.02 0.55 16 25 N -0.85 -7.69 9.10 -10.37 -0.09 -7.79 16 26 H 0.05 0.37 6.40 -51.93 -0.33 0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.06 0.63 6.56 -51.93 -0.34 0.29 16 34 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.08 1.10 5.80 -51.93 -0.30 0.80 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.00 6.44 -51.93 -0.33 0.67 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.01 0.37 7.21 -51.93 -0.37 0.00 16 41 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 42 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 43 H 0.09 1.34 5.87 -51.93 -0.30 1.04 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.22 6.27 -51.93 -0.33 -0.10 16 47 H 0.34 2.51 9.08 -39.29 -0.36 2.15 16 48 H 0.34 2.87 8.99 -39.29 -0.35 2.52 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -31.36 357.80 -9.86 -41.22 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -9.34 Total: 0.11 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -0.91 Total: -20.77 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.34 Total: -43.80 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.36 -9.86 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397414742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.786 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds