Wall clock time and date at job start Mon Mar 30 2020 08:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.51914 * 2 1 4 4 C 1.53118 * 109.57578 * 239.83996 * 2 1 3 5 5 C 1.53032 * 109.27699 * 182.40886 * 4 2 1 6 6 H 1.08999 * 109.46528 * 299.15903 * 5 4 2 7 7 C 1.53002 * 109.46136 * 179.19326 * 5 4 2 8 8 N 1.46849 * 109.52470 * 59.17868 * 5 4 2 9 9 C 1.46901 * 111.00093 * 174.15809 * 8 5 4 10 10 C 1.53002 * 109.46961 * 190.49059 * 9 8 5 11 11 C 1.53003 * 109.46710 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46710 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46871 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00324 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99972 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99974 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99778 * 359.72041 * 15 13 12 18 18 H 1.48503 * 109.47305 * 270.27697 * 17 15 13 19 19 H 1.48498 * 109.47188 * 30.27875 * 17 15 13 20 20 H 1.48500 * 109.46886 * 150.28033 * 17 15 13 21 21 C 1.46848 * 111.19725 * 298.25529 * 8 5 4 22 22 C 1.53038 * 109.52187 * 61.74410 * 21 8 5 23 23 H 1.08999 * 109.50613 * 60.75661 * 22 21 8 24 24 C 1.52999 * 109.50378 * 180.84311 * 22 21 8 25 25 N 1.46908 * 109.46604 * 294.99651 * 24 22 21 26 26 H 1.09000 * 109.47473 * 299.87935 * 1 2 3 27 27 H 1.09002 * 109.47561 * 59.87582 * 1 2 3 28 28 H 1.08996 * 109.47164 * 179.87565 * 1 2 3 29 29 H 1.09004 * 109.50130 * 302.34663 * 4 2 1 30 30 H 1.08996 * 109.50429 * 62.46594 * 4 2 1 31 31 H 1.08998 * 109.47005 * 292.44471 * 7 5 4 32 32 H 1.08996 * 109.47178 * 52.44439 * 7 5 4 33 33 H 1.09005 * 109.47127 * 172.44573 * 7 5 4 34 34 H 1.09000 * 109.47060 * 70.49290 * 9 8 5 35 35 H 1.08995 * 109.47269 * 310.48994 * 9 8 5 36 36 H 1.09000 * 109.47045 * 60.00222 * 10 9 8 37 37 H 1.09003 * 109.46832 * 299.99796 * 10 9 8 38 38 H 1.09000 * 109.47336 * 60.00216 * 11 10 9 39 39 H 1.08995 * 109.47243 * 299.99766 * 11 10 9 40 40 H 1.09000 * 109.47045 * 60.00038 * 12 11 10 41 41 H 1.09000 * 109.47518 * 299.99889 * 12 11 10 42 42 H 0.97004 * 119.99581 * 179.71539 * 16 15 13 43 43 H 1.08994 * 109.46226 * 181.75285 * 21 8 5 44 44 H 1.08992 * 109.46233 * 301.72411 * 21 8 5 45 45 H 1.08993 * 109.47459 * 54.99211 * 24 22 21 46 46 H 1.08999 * 109.46968 * 175.00009 * 24 22 21 47 47 H 1.00898 * 110.99400 * 180.02562 * 25 24 22 48 48 H 1.00899 * 110.99664 * 303.95393 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7735 -1.2103 6 1 3.9678 0.2421 -1.2047 7 6 4.0886 -1.5148 -2.4452 8 7 4.0115 -1.4766 0.0017 9 6 5.4685 -1.6642 0.0025 10 6 5.8593 -2.6174 1.1337 11 6 7.3769 -2.8122 1.1349 12 6 7.7678 -3.7650 2.2664 13 6 9.2626 -3.9564 2.2680 14 1 9.8728 -3.4496 1.5351 15 6 9.8513 -4.7794 3.2047 16 7 11.1557 -4.9469 3.2057 17 14 8.7966 -5.6510 4.4765 18 1 8.6561 -4.7892 5.6777 19 1 7.4541 -5.9238 3.9033 20 1 9.4411 -6.9328 4.8595 21 6 3.5708 -0.7729 1.2129 22 6 2.0417 -0.7242 1.2483 23 1 1.6455 -1.7395 1.2679 24 6 1.5833 0.0273 2.4997 25 7 1.9754 -0.7294 3.6963 26 1 -0.3634 0.5119 0.8910 27 1 -0.3634 0.5158 -0.8889 28 1 -0.3633 -1.0276 -0.0022 29 1 1.6469 -1.7402 -1.2669 30 1 1.7174 -0.1893 -2.1391 31 1 3.8045 -2.5653 -2.3835 32 1 3.6544 -1.0731 -3.3421 33 1 5.1747 -1.4340 -2.4895 34 1 5.9586 -0.7022 0.1525 35 1 5.7811 -2.0862 -0.9526 36 1 5.3693 -3.5794 0.9837 37 1 5.5468 -2.1953 2.0888 38 1 7.8667 -1.8501 1.2851 39 1 7.6898 -3.2341 0.1798 40 1 7.2780 -4.7272 2.1167 41 1 7.4550 -3.3427 3.2214 42 1 11.5702 -5.5227 3.8673 43 1 3.9377 -1.3006 2.0932 44 1 3.9666 0.2426 1.2072 45 1 2.0499 1.0120 2.5235 46 1 0.4993 0.1392 2.4796 47 1 1.6834 -0.2536 4.5367 48 1 1.6080 -1.6687 3.6666 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397414742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:39 Heat of formation + Delta-G solvation = -53.301096 kcal Electronic energy + Delta-G solvation = -21395.813773 eV Core-core repulsion = 18483.039062 eV Total energy + Delta-G solvation = -2912.774711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77642 -37.49200 -36.22394 -34.99605 -33.97504 -32.70771 -30.91546 -28.78206 -28.04183 -26.01923 -25.02024 -23.20333 -22.49109 -21.57206 -20.99214 -20.67297 -18.84556 -17.16796 -16.79076 -16.35507 -16.09811 -15.91911 -15.83364 -15.51581 -14.95940 -14.77571 -14.62769 -14.25115 -13.84793 -13.75777 -13.45361 -13.37158 -13.15597 -12.95205 -12.87393 -12.66639 -12.55980 -12.31984 -12.20643 -12.00513 -11.77185 -11.72669 -11.50688 -11.42304 -11.31002 -11.25271 -10.92217 -10.88840 -10.75664 -9.47271 -9.20343 -8.29313 -6.33217 1.36193 1.37990 1.51107 2.37250 2.91642 3.05983 3.58309 3.78304 3.83011 3.94260 4.04259 4.18627 4.20816 4.31670 4.39999 4.48843 4.52279 4.54879 4.60455 4.68224 4.69235 4.75231 4.77716 4.81766 4.89658 4.92557 4.98904 5.03683 5.10989 5.12957 5.16157 5.21794 5.24501 5.28063 5.33052 5.36771 5.42400 5.58108 5.59506 5.65967 5.69029 6.21579 6.28688 6.30155 6.32435 6.64106 6.74676 7.31559 8.87753 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003868 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.042153 B = 7236.521322 C = 8205.842563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.099 4.099 5 C 0.077 3.923 6 H 0.030 0.970 7 C -0.146 4.146 8 N -0.539 5.539 9 C 0.060 3.940 10 C -0.101 4.101 11 C -0.094 4.094 12 C -0.010 4.010 13 C -0.534 4.534 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.247 1.247 20 H -0.282 1.282 21 C 0.068 3.932 22 C -0.069 4.069 23 H 0.069 0.931 24 C 0.070 3.930 25 N -0.863 5.863 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.022 0.978 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.048 0.952 40 H 0.018 0.982 41 H 0.015 0.985 42 H 0.266 0.734 43 H 0.073 0.927 44 H 0.015 0.985 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.348 0.652 48 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.104 11.341 -6.799 30.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.082 0.918 4 C -0.137 4.137 5 C -0.031 4.031 6 H 0.048 0.952 7 C -0.203 4.203 8 N -0.264 5.264 9 C -0.068 4.068 10 C -0.139 4.139 11 C -0.132 4.132 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.171 1.171 20 H -0.207 1.207 21 C -0.059 4.059 22 C -0.089 4.089 23 H 0.088 0.912 24 C -0.061 4.061 25 N -0.394 5.394 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.034 0.966 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.162 0.838 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.445 10.925 -6.987 29.454 hybrid contribution 0.032 0.303 0.850 0.903 sum -26.413 11.228 -6.137 29.350 Atomic orbital electron populations 1.21826 0.93779 1.02050 1.02268 1.21173 0.96571 0.98817 0.94019 0.91757 1.21647 0.92848 1.01235 0.97921 1.21700 0.96475 0.94941 0.90033 0.95219 1.21904 1.00688 1.01055 0.96692 1.62005 1.11883 1.50034 1.02460 1.22094 0.87411 0.97548 0.99711 1.21493 0.94573 0.99619 0.98206 1.21288 0.95007 0.98516 0.98369 1.19517 0.93851 0.95816 0.95577 1.21563 0.93076 1.27419 1.15183 0.95184 1.26066 0.96209 0.97197 1.00011 1.70079 1.11593 1.40228 1.37514 0.85612 0.79778 0.77991 0.79006 1.19108 1.17084 1.20717 1.22042 0.95846 0.95367 0.92681 1.21157 0.93869 0.99623 0.94227 0.91238 1.21827 0.98069 0.96823 0.89412 1.58644 1.68997 1.07028 1.04747 0.92035 0.91860 0.92685 0.91501 0.90062 0.92197 0.90541 0.93174 0.95962 0.90038 0.91904 0.92553 0.93886 0.93317 0.96318 0.96689 0.92483 0.90819 0.96631 0.91910 0.93572 0.83827 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.91 71.98 0.64 -0.99 16 2 C -0.09 -1.32 2.29 -10.71 -0.02 -1.34 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.10 -1.60 4.66 30.64 0.14 -1.46 16 5 C 0.08 1.57 2.44 44.94 0.11 1.68 16 6 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 7 C -0.15 -2.76 8.53 71.98 0.61 -2.15 16 8 N -0.54 -13.49 4.49 -871.13 -3.91 -17.40 16 9 C 0.06 1.73 4.69 86.30 0.40 2.13 16 10 C -0.10 -3.41 5.15 30.60 0.16 -3.25 16 11 C -0.09 -3.89 5.15 30.60 0.16 -3.73 16 12 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 13 C -0.53 -32.43 9.66 25.60 0.25 -32.18 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.00 0.09 5.47 84.66 0.46 0.55 16 16 N -0.95 -61.79 13.96 21.45 0.30 -61.49 16 17 Si 0.95 46.06 27.46 68.60 1.88 47.94 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.25 -11.18 6.55 99.48 0.65 -10.53 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 C 0.07 1.66 4.46 86.33 0.38 2.04 16 22 C -0.07 -1.27 1.99 -10.74 -0.02 -1.29 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 C 0.07 1.10 6.00 86.30 0.52 1.62 16 25 N -0.86 -14.51 9.10 -186.71 -1.70 -16.20 16 26 H 0.06 0.63 6.40 -2.39 -0.02 0.62 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 33 H 0.05 1.02 6.56 -2.38 -0.02 1.01 16 34 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 35 H 0.08 2.27 5.80 -2.39 -0.01 2.25 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 1.92 6.44 -2.39 -0.02 1.90 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.02 0.91 7.21 -2.39 -0.02 0.89 16 41 H 0.01 0.72 7.56 -2.39 -0.02 0.70 16 42 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 43 H 0.07 2.08 5.87 -2.39 -0.01 2.07 16 44 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 0.58 6.27 -2.39 -0.01 0.57 16 47 H 0.35 4.65 9.08 -89.70 -0.81 3.84 16 48 H 0.34 5.34 8.99 -89.70 -0.81 4.53 16 Total: -1.00 -67.95 357.80 -0.27 -68.23 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.77 Total: 17.68 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 3.92 Total: -38.75 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -5.31 Total: -95.10 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Total: -67.95 -0.27 -68.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397414742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.925 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds