Wall clock time and date at job start Mon Mar 30 2020 08:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52845 * 1 3 3 H 1.10862 * 107.01753 * 2 1 4 4 C 1.51836 * 111.49155 * 242.45535 * 2 1 3 5 5 C 1.51773 * 114.88771 * 277.41402 * 4 2 1 6 6 H 1.11071 * 107.36231 * 199.76367 * 5 4 2 7 7 C 1.52881 * 111.38004 * 83.33798 * 5 4 2 8 8 N 1.45799 * 113.19923 * 317.70295 * 5 4 2 9 9 C 1.46907 * 111.59054 * 179.16960 * 8 5 4 10 10 C 1.53004 * 109.46973 * 48.56440 * 9 8 5 11 11 C 1.52997 * 109.46878 * 174.17613 * 10 9 8 12 12 C 1.52996 * 109.47393 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47504 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99946 * 179.73008 * 13 12 11 16 16 N 1.31517 * 119.99879 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46825 * 90.00834 * 17 15 13 19 19 H 1.48498 * 109.47153 * 210.00516 * 17 15 13 20 20 H 1.48493 * 109.47234 * 330.00463 * 17 15 13 21 21 C 1.46267 * 113.39416 * 52.47759 * 8 5 4 22 22 C 1.52424 * 110.56327 * 116.61537 * 2 1 3 23 23 H 1.09349 * 109.47443 * 194.87541 * 22 2 1 24 24 C 1.53200 * 109.58285 * 314.19894 * 22 2 1 25 25 N 1.46899 * 109.46946 * 186.11151 * 24 22 2 26 26 H 1.09003 * 109.47383 * 303.38535 * 1 2 3 27 27 H 1.09003 * 109.47370 * 63.38084 * 1 2 3 28 28 H 1.09001 * 109.47352 * 183.38591 * 1 2 3 29 29 H 1.10098 * 108.87745 * 39.76655 * 4 2 1 30 30 H 1.10154 * 108.78536 * 155.24852 * 4 2 1 31 31 H 1.08997 * 109.47029 * 296.27483 * 7 5 4 32 32 H 1.08996 * 109.47594 * 56.27986 * 7 5 4 33 33 H 1.09007 * 109.47077 * 176.28065 * 7 5 4 34 34 H 1.08996 * 109.46850 * 288.56513 * 9 8 5 35 35 H 1.09003 * 109.46671 * 168.56143 * 9 8 5 36 36 H 1.08994 * 109.46934 * 54.17327 * 10 9 8 37 37 H 1.08999 * 109.46911 * 294.17080 * 10 9 8 38 38 H 1.09005 * 109.47376 * 59.99698 * 11 10 9 39 39 H 1.09009 * 109.47301 * 299.99838 * 11 10 9 40 40 H 1.09005 * 109.46883 * 59.99670 * 12 11 10 41 41 H 1.09002 * 109.47254 * 300.00617 * 12 11 10 42 42 H 0.97000 * 119.99999 * 179.97438 * 16 15 13 43 43 H 1.08617 * 110.88300 * 60.50164 * 21 8 5 44 44 H 1.09610 * 108.98973 * 179.77525 * 21 8 5 45 45 H 1.08997 * 109.47171 * 306.11744 * 24 22 2 46 46 H 1.09009 * 109.47247 * 66.11561 * 24 22 2 47 47 H 1.00908 * 110.99933 * 180.02562 * 25 24 22 48 48 H 1.00898 * 111.00533 * 303.95697 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8529 1.0601 0.0000 4 6 2.0847 -0.6533 -1.2527 5 6 2.1534 -2.1688 -1.2060 6 1 2.8811 -2.4916 -1.9805 7 6 0.8107 -2.7992 -1.5761 8 7 2.6320 -2.6829 0.0717 9 6 2.6660 -4.1515 0.0848 10 6 3.3647 -4.6569 -1.1791 11 6 3.5297 -6.1757 -1.0979 12 6 4.2278 -6.6812 -2.3620 13 6 4.3909 -8.1772 -2.2818 14 1 4.0329 -8.7137 -1.4156 15 6 4.9927 -8.8615 -3.3165 16 7 5.1346 -10.1671 -3.2467 17 14 5.6051 -7.9344 -4.8181 18 1 7.0146 -7.5195 -4.6027 19 1 5.5253 -8.8157 -6.0106 20 1 4.7624 -6.7311 -5.0346 21 6 1.8965 -2.1573 1.2215 22 6 2.0638 -0.6394 1.2759 23 1 3.1248 -0.3989 1.3867 24 6 1.3020 -0.0879 2.4853 25 7 1.9146 -0.5926 3.7214 26 1 -0.3634 0.5655 0.8581 27 1 -0.3634 0.4605 -0.9187 28 1 -0.3634 -1.0259 0.0607 29 1 1.4701 -0.3514 -2.1148 30 1 3.0959 -0.2584 -1.4396 31 1 0.0613 -2.5188 -0.8360 32 1 0.5012 -2.4442 -2.5591 33 1 0.9123 -3.8844 -1.5971 34 1 1.6474 -4.5382 0.1162 35 1 3.2121 -4.4944 0.9637 36 1 4.3453 -4.1888 -1.2639 37 1 2.7640 -4.4029 -2.0524 38 1 2.5489 -6.6438 -1.0130 39 1 4.1303 -6.4298 -0.2244 40 1 5.2085 -6.2132 -2.4473 41 1 3.6269 -6.4272 -3.2352 42 1 5.5576 -10.6486 -3.9747 43 1 0.8445 -2.4209 1.1616 44 1 2.3107 -2.5916 2.1387 45 1 1.3456 1.0011 2.4764 46 1 0.2618 -0.4103 2.4374 47 1 1.4294 -0.2431 4.5343 48 1 1.9447 -1.6011 3.7246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397414749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:49 Heat of formation + Delta-G solvation = -29.295218 kcal Electronic energy + Delta-G solvation = -21589.856205 eV Core-core repulsion = 18678.122467 eV Total energy + Delta-G solvation = -2911.733738 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18710 -36.70794 -34.72603 -33.76226 -32.08141 -31.58127 -29.38487 -27.66080 -27.44262 -25.23893 -24.13737 -22.46414 -22.09116 -20.18977 -19.70195 -17.97083 -16.72333 -16.55030 -16.09395 -15.59648 -15.37605 -14.65425 -14.53576 -14.22436 -14.10574 -13.65344 -13.25107 -13.17153 -12.85760 -12.63663 -12.40737 -12.21497 -12.07757 -11.94710 -11.79461 -11.47770 -11.20830 -11.15283 -11.04347 -10.77543 -10.64539 -10.47491 -10.24822 -10.03442 -9.83548 -9.62192 -9.43014 -9.11563 -8.94987 -8.49719 -8.08624 -6.00489 -3.97873 3.33926 3.40784 3.45183 3.87398 4.21196 4.49069 4.49512 4.57698 4.68338 4.89091 4.95264 5.07951 5.13377 5.22919 5.29757 5.33510 5.36898 5.41440 5.44782 5.49428 5.53440 5.57107 5.65294 5.74163 5.81657 5.87137 5.87196 5.95320 6.00183 6.06090 6.10095 6.24525 6.27152 6.29646 6.46571 6.69928 6.80810 6.83855 6.97210 7.11641 7.26355 7.32989 7.38416 7.51028 7.85036 8.59077 9.05021 9.62667 11.13203 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.003503 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.042650 B = 7991.952261 C = 8467.082857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.062 0.938 4 C -0.102 4.102 5 C 0.087 3.913 6 H 0.081 0.919 7 C -0.189 4.189 8 N -0.539 5.539 9 C 0.063 3.937 10 C -0.123 4.123 11 C -0.101 4.101 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.067 3.933 22 C -0.076 4.076 23 H 0.086 0.914 24 C 0.066 3.934 25 N -0.852 5.852 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.011 0.989 41 H 0.013 0.987 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.028 0.972 47 H 0.339 0.661 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 23.012 8.975 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.139 4.139 5 C -0.022 4.022 6 H 0.099 0.901 7 C -0.248 4.248 8 N -0.262 5.262 9 C -0.064 4.064 10 C -0.160 4.160 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.137 4.137 16 N -0.546 5.546 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.061 4.061 22 C -0.095 4.095 23 H 0.105 0.895 24 C -0.065 4.065 25 N -0.383 5.383 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.046 0.954 47 H 0.151 0.849 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.382 23.418 8.670 26.675 hybrid contribution -1.418 -0.449 -0.775 1.677 sum -10.799 22.969 7.895 26.580 Atomic orbital electron populations 1.22009 0.95616 1.01859 1.01395 1.20814 0.95255 0.99406 0.94427 0.91959 1.21292 1.01545 0.94138 0.96973 1.21305 0.95295 0.93750 0.91809 0.90097 1.22589 0.98683 1.02110 1.01423 1.60730 1.55082 1.08673 1.01748 1.22142 0.99019 0.85280 0.99984 1.21837 1.00571 0.97637 0.96004 1.21419 1.00376 0.91973 1.00134 1.19562 0.95164 0.96887 0.93466 1.21193 1.38508 0.90600 1.05395 0.91145 1.25052 0.95520 0.94734 0.98345 1.69924 1.44606 1.06979 1.33045 0.86759 0.79617 0.80125 0.82679 1.20290 1.21484 1.19030 1.21791 0.95723 0.94650 0.93914 1.21054 1.01243 0.94361 0.92849 0.89528 1.21933 0.95240 0.99720 0.89578 1.58738 1.60405 1.15018 1.04096 0.92699 0.92811 0.92539 0.91737 0.91830 0.92873 0.92338 0.91619 0.95077 0.90845 0.91614 0.92324 0.93150 0.92816 0.97101 0.96861 0.92821 0.95341 0.91323 0.91115 0.95429 0.84912 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.20 37.08 0.30 -0.88 16 2 C -0.08 -0.69 2.37 -91.58 -0.22 -0.91 16 3 H 0.06 0.51 8.28 -50.86 -0.42 0.09 16 4 C -0.10 -0.99 4.92 -27.94 -0.14 -1.13 16 5 C 0.09 1.01 2.12 -68.99 -0.15 0.86 16 6 H 0.08 1.05 6.50 -50.74 -0.33 0.72 16 7 C -0.19 -2.13 8.17 37.10 0.30 -1.83 16 8 N -0.54 -6.67 4.55 -227.94 -1.04 -7.71 16 9 C 0.06 0.87 4.49 -3.82 -0.02 0.85 16 10 C -0.12 -1.99 4.11 -26.73 -0.11 -2.10 16 11 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 12 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 13 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 17 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.43 6.53 56.52 0.37 -6.07 16 21 C 0.07 0.71 4.24 -4.26 -0.02 0.69 16 22 C -0.08 -0.71 2.37 -90.91 -0.22 -0.92 16 23 H 0.09 0.97 8.17 -51.73 -0.42 0.55 16 24 C 0.07 0.52 5.22 -3.72 -0.02 0.50 16 25 N -0.85 -6.64 9.62 -10.27 -0.10 -6.74 16 26 H 0.05 0.38 6.56 -51.93 -0.34 0.04 16 27 H 0.05 0.39 8.07 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 5.01 -51.93 -0.26 0.23 16 29 H 0.06 0.57 7.85 -51.30 -0.40 0.17 16 30 H 0.06 0.64 8.24 -51.27 -0.42 0.21 16 31 H 0.05 0.57 5.02 -51.93 -0.26 0.31 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.06 0.84 5.50 -51.92 -0.29 0.55 16 34 H 0.03 0.43 7.00 -51.93 -0.36 0.06 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.93 5.60 -51.93 -0.29 0.64 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 40 H 0.01 0.26 7.58 -51.93 -0.39 -0.13 16 41 H 0.01 0.32 7.18 -51.93 -0.37 -0.05 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.03 0.30 6.38 -52.14 -0.33 -0.03 16 44 H 0.07 0.72 6.66 -51.58 -0.34 0.37 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.21 6.82 -51.92 -0.35 -0.15 16 47 H 0.34 2.04 9.08 -39.29 -0.36 1.68 16 48 H 0.34 2.58 7.22 -39.29 -0.28 2.30 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -30.82 344.71 -9.57 -40.39 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.78 Total: 0.19 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -0.95 Total: -21.13 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.36 Total: -42.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.82 -9.57 -40.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397414749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.098 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds