Wall clock time and date at job start Mon Mar 30 2020 08:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52845 * 1 3 3 H 1.10862 * 107.01753 * 2 1 4 4 C 1.51836 * 111.49155 * 242.45535 * 2 1 3 5 5 C 1.51773 * 114.88771 * 277.41402 * 4 2 1 6 6 H 1.11071 * 107.36231 * 199.76367 * 5 4 2 7 7 C 1.52881 * 111.38004 * 83.33798 * 5 4 2 8 8 N 1.45799 * 113.19923 * 317.70295 * 5 4 2 9 9 C 1.46907 * 111.59054 * 179.16960 * 8 5 4 10 10 C 1.53004 * 109.46973 * 48.56440 * 9 8 5 11 11 C 1.52997 * 109.46878 * 174.17613 * 10 9 8 12 12 C 1.52996 * 109.47393 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47504 * 179.97438 * 12 11 10 14 14 H 1.07993 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99946 * 179.73008 * 13 12 11 16 16 N 1.31517 * 119.99879 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.46825 * 90.00834 * 17 15 13 19 19 H 1.48498 * 109.47153 * 210.00516 * 17 15 13 20 20 H 1.48493 * 109.47234 * 330.00463 * 17 15 13 21 21 C 1.46267 * 113.39416 * 52.47759 * 8 5 4 22 22 C 1.52424 * 110.56327 * 116.61537 * 2 1 3 23 23 H 1.09349 * 109.47443 * 194.87541 * 22 2 1 24 24 C 1.53200 * 109.58285 * 314.19894 * 22 2 1 25 25 N 1.46899 * 109.46946 * 186.11151 * 24 22 2 26 26 H 1.09003 * 109.47383 * 303.38535 * 1 2 3 27 27 H 1.09003 * 109.47370 * 63.38084 * 1 2 3 28 28 H 1.09001 * 109.47352 * 183.38591 * 1 2 3 29 29 H 1.10098 * 108.87745 * 39.76655 * 4 2 1 30 30 H 1.10154 * 108.78536 * 155.24852 * 4 2 1 31 31 H 1.08997 * 109.47029 * 296.27483 * 7 5 4 32 32 H 1.08996 * 109.47594 * 56.27986 * 7 5 4 33 33 H 1.09007 * 109.47077 * 176.28065 * 7 5 4 34 34 H 1.08996 * 109.46850 * 288.56513 * 9 8 5 35 35 H 1.09003 * 109.46671 * 168.56143 * 9 8 5 36 36 H 1.08994 * 109.46934 * 54.17327 * 10 9 8 37 37 H 1.08999 * 109.46911 * 294.17080 * 10 9 8 38 38 H 1.09005 * 109.47376 * 59.99698 * 11 10 9 39 39 H 1.09009 * 109.47301 * 299.99838 * 11 10 9 40 40 H 1.09005 * 109.46883 * 59.99670 * 12 11 10 41 41 H 1.09002 * 109.47254 * 300.00617 * 12 11 10 42 42 H 0.97000 * 119.99999 * 179.97438 * 16 15 13 43 43 H 1.08617 * 110.88300 * 60.50164 * 21 8 5 44 44 H 1.09610 * 108.98973 * 179.77525 * 21 8 5 45 45 H 1.08997 * 109.47171 * 306.11744 * 24 22 2 46 46 H 1.09009 * 109.47247 * 66.11561 * 24 22 2 47 47 H 1.00908 * 110.99933 * 180.02562 * 25 24 22 48 48 H 1.00898 * 111.00533 * 303.95697 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5284 0.0000 0.0000 3 1 1.8529 1.0601 0.0000 4 6 2.0847 -0.6533 -1.2527 5 6 2.1534 -2.1688 -1.2060 6 1 2.8811 -2.4916 -1.9805 7 6 0.8107 -2.7992 -1.5761 8 7 2.6320 -2.6829 0.0717 9 6 2.6660 -4.1515 0.0848 10 6 3.3647 -4.6569 -1.1791 11 6 3.5297 -6.1757 -1.0979 12 6 4.2278 -6.6812 -2.3620 13 6 4.3909 -8.1772 -2.2818 14 1 4.0329 -8.7137 -1.4156 15 6 4.9927 -8.8615 -3.3165 16 7 5.1346 -10.1671 -3.2467 17 14 5.6051 -7.9344 -4.8181 18 1 7.0146 -7.5195 -4.6027 19 1 5.5253 -8.8157 -6.0106 20 1 4.7624 -6.7311 -5.0346 21 6 1.8965 -2.1573 1.2215 22 6 2.0638 -0.6394 1.2759 23 1 3.1248 -0.3989 1.3867 24 6 1.3020 -0.0879 2.4853 25 7 1.9146 -0.5926 3.7214 26 1 -0.3634 0.5655 0.8581 27 1 -0.3634 0.4605 -0.9187 28 1 -0.3634 -1.0259 0.0607 29 1 1.4701 -0.3514 -2.1148 30 1 3.0959 -0.2584 -1.4396 31 1 0.0613 -2.5188 -0.8360 32 1 0.5012 -2.4442 -2.5591 33 1 0.9123 -3.8844 -1.5971 34 1 1.6474 -4.5382 0.1162 35 1 3.2121 -4.4944 0.9637 36 1 4.3453 -4.1888 -1.2639 37 1 2.7640 -4.4029 -2.0524 38 1 2.5489 -6.6438 -1.0130 39 1 4.1303 -6.4298 -0.2244 40 1 5.2085 -6.2132 -2.4473 41 1 3.6269 -6.4272 -3.2352 42 1 5.5576 -10.6486 -3.9747 43 1 0.8445 -2.4209 1.1616 44 1 2.3107 -2.5916 2.1387 45 1 1.3456 1.0011 2.4764 46 1 0.2618 -0.4103 2.4374 47 1 1.4294 -0.2431 4.5343 48 1 1.9447 -1.6011 3.7246 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397414749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:48 Heat of formation + Delta-G solvation = -50.094647 kcal Electronic energy + Delta-G solvation = -21590.758136 eV Core-core repulsion = 18678.122467 eV Total energy + Delta-G solvation = -2912.635668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04094 -37.70302 -36.06328 -34.95498 -33.94691 -32.36994 -30.90075 -28.58678 -28.33510 -26.51121 -25.23352 -23.59333 -23.05877 -21.91029 -20.76651 -18.87309 -18.74158 -17.48470 -16.89109 -16.63236 -16.34256 -16.11390 -15.63249 -15.42193 -15.12604 -14.78276 -14.50031 -14.31057 -13.94677 -13.69827 -13.65057 -13.37489 -13.22148 -13.11589 -12.81680 -12.71809 -12.58912 -12.26866 -12.05936 -11.95351 -11.89382 -11.75598 -11.41751 -11.35785 -11.25229 -11.21701 -11.06673 -10.76721 -10.73900 -9.53338 -9.05283 -8.30064 -6.34089 1.35456 1.37082 1.49603 2.36100 2.92157 3.05262 3.58428 3.76676 3.81798 3.95002 4.05311 4.14003 4.17010 4.22631 4.34763 4.44380 4.47440 4.50018 4.56582 4.62180 4.68303 4.73671 4.74946 4.77056 4.86814 4.89039 4.94439 5.02027 5.03424 5.11803 5.18288 5.20003 5.22935 5.24957 5.28480 5.35941 5.48960 5.56984 5.58933 5.64459 5.68491 6.24160 6.27557 6.29009 6.41453 6.60304 6.74139 7.30720 8.87009 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.032175 B = 0.003503 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.042650 B = 7991.952261 C = 8467.082857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.071 0.929 4 C -0.101 4.101 5 C 0.086 3.914 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.546 5.546 9 C 0.071 3.929 10 C -0.108 4.108 11 C -0.094 4.094 12 C -0.011 4.011 13 C -0.534 4.534 14 H 0.030 0.970 15 C 0.001 3.999 16 N -0.953 5.953 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.246 1.246 21 C 0.069 3.931 22 C -0.069 4.069 23 H 0.067 0.933 24 C 0.072 3.928 25 N -0.862 5.862 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.018 0.982 42 H 0.266 0.734 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.035 0.965 47 H 0.349 0.651 48 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.200 25.789 8.447 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.022 4.022 6 H 0.083 0.917 7 C -0.243 4.243 8 N -0.270 5.270 9 C -0.057 4.057 10 C -0.146 4.146 11 C -0.132 4.132 12 C -0.048 4.048 13 C -0.572 4.572 14 H 0.048 0.952 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.058 4.058 22 C -0.089 4.089 23 H 0.085 0.915 24 C -0.059 4.059 25 N -0.394 5.394 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.053 0.947 47 H 0.162 0.838 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.027 26.216 8.166 29.232 hybrid contribution -1.233 -1.381 -0.527 1.925 sum -11.261 24.835 7.638 28.319 Atomic orbital electron populations 1.21969 0.94632 1.01541 1.02288 1.20803 0.95968 0.99622 0.93404 0.91020 1.21287 1.01745 0.92689 0.98122 1.21340 0.94938 0.95053 0.90886 0.91713 1.22530 0.98676 1.00846 1.02231 1.60707 1.55994 1.07505 1.02805 1.21952 0.98665 0.86553 0.98496 1.21640 1.00867 0.94515 0.97574 1.21287 0.99396 0.94697 0.97810 1.19524 0.95964 0.93649 0.95684 1.21563 1.38245 0.93226 1.04201 0.95195 1.26074 0.95697 0.95644 1.02118 1.70079 1.45847 1.08995 1.34509 0.85610 0.79577 0.79199 0.77983 1.19112 1.20850 1.16997 1.21815 0.95504 0.95497 0.93025 1.20978 1.00369 0.93441 0.94076 0.91464 1.21873 0.95249 0.99920 0.88887 1.58739 1.60852 1.15162 1.04619 0.91624 0.92145 0.93411 0.90523 0.92277 0.92183 0.91383 0.93383 0.94981 0.91025 0.91880 0.91839 0.93640 0.93445 0.96542 0.96405 0.92496 0.95122 0.91413 0.90544 0.94699 0.83769 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.20 71.93 0.59 -1.29 16 2 C -0.08 -1.18 2.37 -11.42 -0.03 -1.21 16 3 H 0.07 0.98 8.28 -1.38 -0.01 0.97 16 4 C -0.10 -1.76 4.92 29.81 0.15 -1.62 16 5 C 0.09 1.87 2.12 44.68 0.09 1.97 16 6 H 0.06 1.61 6.50 -1.27 -0.01 1.60 16 7 C -0.18 -3.85 8.17 71.94 0.59 -3.26 16 8 N -0.55 -12.89 4.55 -875.07 -3.98 -16.87 16 9 C 0.07 1.89 4.49 86.30 0.39 2.28 16 10 C -0.11 -3.41 4.11 30.59 0.13 -3.29 16 11 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 12 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 13 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16 14 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 15 C 0.00 0.06 5.47 84.65 0.46 0.52 16 16 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 17 Si 0.95 45.38 27.47 68.60 1.88 47.27 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16 21 C 0.07 1.36 4.24 86.36 0.37 1.72 16 22 C -0.07 -1.17 2.37 -10.98 -0.03 -1.20 16 23 H 0.07 1.42 8.17 -2.20 -0.02 1.40 16 24 C 0.07 0.97 5.22 86.37 0.45 1.42 16 25 N -0.86 -12.01 9.62 -186.42 -1.79 -13.80 16 26 H 0.06 0.70 6.56 -2.39 -0.02 0.69 16 27 H 0.06 0.70 8.07 -2.39 -0.02 0.68 16 28 H 0.05 0.70 5.01 -2.39 -0.01 0.69 16 29 H 0.08 1.16 7.85 -1.80 -0.01 1.15 16 30 H 0.06 1.09 8.24 -1.77 -0.01 1.07 16 31 H 0.06 1.16 5.02 -2.39 -0.01 1.15 16 32 H 0.07 1.27 8.10 -2.39 -0.02 1.26 16 33 H 0.05 1.17 5.50 -2.38 -0.01 1.16 16 34 H 0.03 0.86 7.00 -2.39 -0.02 0.84 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.06 1.95 5.60 -2.39 -0.01 1.93 16 38 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.02 0.77 7.58 -2.38 -0.02 0.75 16 41 H 0.02 0.84 7.18 -2.39 -0.02 0.82 16 42 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 43 H 0.03 0.60 6.38 -2.59 -0.02 0.58 16 44 H 0.07 1.33 6.66 -2.06 -0.01 1.32 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.03 0.43 6.82 -2.38 -0.02 0.42 16 47 H 0.35 3.58 9.08 -89.69 -0.81 2.76 16 48 H 0.34 4.71 7.22 -89.70 -0.65 4.06 16 Total: -1.00 -66.67 344.71 -0.47 -67.13 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.56 Total: 16.85 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.68 Total: -39.59 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -5.48 Total: -91.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Total: -66.67 -0.47 -67.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397414749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.039 kcal (2) G-P(sol) polarization free energy of solvation -66.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds