Wall clock time and date at job start Mon Mar 30 2020 09:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.52991 * 109.47375 * 120.00468 * 2 1 3 5 5 N 1.46901 * 109.47360 * 178.37424 * 4 2 1 6 6 C 1.46901 * 111.00154 * 165.07356 * 5 4 2 7 7 C 1.50699 * 109.47137 * 294.69946 * 6 5 4 8 8 H 1.08004 * 119.99893 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99956 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00006 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47108 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47381 * 120.00060 * 11 9 7 14 14 H 1.48501 * 109.47164 * 239.99937 * 11 9 7 15 15 C 1.46901 * 111.00298 * 289.03154 * 5 4 2 16 16 H 1.08998 * 109.47315 * 83.47404 * 15 5 4 17 17 C 1.52998 * 109.47430 * 203.47937 * 15 5 4 18 18 C 1.53001 * 109.46686 * 323.47982 * 15 5 4 19 19 C 1.53119 * 109.52194 * 302.08695 * 18 15 5 20 20 C 1.53042 * 109.27813 * 182.44261 * 19 18 15 21 21 N 1.46849 * 109.52121 * 59.18402 * 20 19 18 22 22 C 1.46841 * 111.19693 * 298.25556 * 21 20 19 23 23 C 1.53043 * 109.52522 * 61.74324 * 22 21 20 24 24 H 1.09001 * 109.46966 * 299.99132 * 1 2 3 25 25 H 1.08993 * 109.47450 * 59.99322 * 1 2 3 26 26 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46812 * 240.00537 * 2 1 3 28 28 H 1.09001 * 109.46408 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47191 * 300.00303 * 3 2 1 30 30 H 1.08997 * 109.46902 * 60.01097 * 3 2 1 31 31 H 1.09006 * 109.47621 * 58.37897 * 4 2 1 32 32 H 1.08997 * 109.47583 * 298.37451 * 4 2 1 33 33 H 1.08998 * 109.47080 * 54.70230 * 6 5 4 34 34 H 1.09005 * 109.46779 * 174.70463 * 6 5 4 35 35 H 0.96995 * 120.00042 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46839 * 299.99577 * 17 15 5 37 37 H 1.08998 * 109.47306 * 59.99462 * 17 15 5 38 38 H 1.09001 * 109.47246 * 180.02562 * 17 15 5 39 39 H 1.08998 * 109.52765 * 62.28036 * 18 15 5 40 40 H 1.09005 * 109.50645 * 302.38955 * 19 18 15 41 41 H 1.09004 * 109.50370 * 62.50359 * 19 18 15 42 42 H 1.08995 * 109.46523 * 299.16146 * 20 19 18 43 43 H 1.09004 * 109.45994 * 179.19611 * 20 19 18 44 44 H 1.00903 * 110.99569 * 174.15764 * 21 20 19 45 45 H 1.09001 * 109.46284 * 301.73261 * 22 21 20 46 46 H 1.09001 * 109.46485 * 181.76273 * 22 21 20 47 47 H 1.08992 * 109.50242 * 180.88159 * 23 22 21 48 48 H 1.08996 * 109.50037 * 60.76210 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5085 -0.7554 1.2296 6 6 4.0444 -1.1120 2.5501 7 6 3.7084 -0.0253 3.5387 8 1 3.1520 0.8431 3.2182 9 6 4.1104 -0.1403 4.8526 10 7 4.7875 -1.1981 5.2429 11 14 3.6934 1.2062 6.0781 12 1 2.9315 2.2809 5.3926 13 1 2.8704 0.6387 7.1762 14 1 4.9471 1.7700 6.6398 15 6 4.0001 -1.6761 0.1958 16 1 4.0204 -1.1645 -0.7665 17 6 5.4125 -2.1406 0.5564 18 6 3.0709 -2.8885 0.1092 19 6 3.0007 -3.5780 1.4746 20 6 2.1189 -4.8241 1.3666 21 7 2.6820 -5.7385 0.3650 22 6 2.7155 -5.1148 -0.9639 23 6 3.6151 -3.8773 -0.9256 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6532 -1.7403 1.2638 32 1 1.7008 -0.1911 2.1389 33 1 3.6027 -2.0523 2.8796 34 1 5.1270 -1.2220 2.4852 35 1 5.0707 -1.2788 6.1671 36 1 6.0745 -1.2768 0.6180 37 1 5.3922 -2.6522 1.5186 38 1 5.7775 -2.8234 -0.2109 39 1 2.0738 -2.5630 -0.1872 40 1 4.0037 -3.8679 1.7879 41 1 2.5740 -2.8925 2.2069 42 1 1.1125 -4.5321 1.0668 43 1 2.0785 -5.3253 2.3338 44 1 2.1724 -6.6091 0.3432 45 1 1.7064 -4.8213 -1.2529 46 1 3.1083 -5.8270 -1.6896 47 1 3.6273 -3.4057 -1.9082 48 1 4.6277 -4.1719 -0.6501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400583000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:09:46 Heat of formation + Delta-G solvation = 3.521375 kcal Electronic energy + Delta-G solvation = -23064.125407 eV Core-core repulsion = 20153.814704 eV Total energy + Delta-G solvation = -2910.310703 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.87680 -36.92526 -34.58080 -32.91033 -31.41081 -30.42484 -29.00632 -27.29774 -26.63633 -24.27461 -24.09551 -22.84745 -21.86212 -20.07193 -19.21590 -18.05680 -16.66534 -16.15046 -15.17748 -14.78580 -14.58374 -14.42045 -14.33587 -13.89382 -13.61009 -13.41350 -12.80252 -12.70712 -12.36597 -12.18572 -11.86299 -11.79737 -11.50275 -11.30462 -11.24672 -11.02562 -10.90600 -10.74780 -10.55925 -10.53388 -10.39550 -10.23498 -10.10060 -9.93067 -9.86251 -9.76571 -9.31711 -8.97765 -8.35557 -8.33315 -6.89458 -5.96168 -3.95251 3.33069 3.41130 3.45557 4.34977 4.47487 4.91781 5.08247 5.16793 5.17835 5.37667 5.40127 5.44168 5.48917 5.61388 5.63672 5.70779 5.76596 5.88603 5.92230 5.99989 6.00620 6.09584 6.13345 6.19899 6.21065 6.31462 6.34429 6.35351 6.41327 6.49719 6.57592 6.63303 6.66194 6.80276 6.86215 6.95611 6.99905 7.07118 7.16870 7.47220 7.47920 7.55357 7.89544 8.22148 8.37143 8.69923 9.13123 9.67648 11.14045 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.007095 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.743133 B = 3945.643292 C = 4816.278529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.132 4.132 4 C 0.054 3.946 5 N -0.525 5.525 6 C 0.171 3.829 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.088 3.912 16 H 0.063 0.937 17 C -0.152 4.152 18 C -0.114 4.114 19 C -0.126 4.126 20 C 0.059 3.941 21 N -0.689 5.689 22 C 0.060 3.940 23 C -0.112 4.112 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.080 0.920 33 H 0.011 0.989 34 H 0.040 0.960 35 H 0.258 0.742 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.335 0.665 45 H 0.023 0.977 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -5.084 -11.962 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.189 4.189 4 C -0.074 4.074 5 N -0.248 5.248 6 C 0.046 3.954 7 C -0.542 4.542 8 H 0.079 0.921 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.021 4.021 16 H 0.081 0.919 17 C -0.209 4.209 18 C -0.134 4.134 19 C -0.163 4.163 20 C -0.070 4.070 21 N -0.320 5.320 22 C -0.069 4.069 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.151 0.849 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.885 -4.494 -11.754 13.499 hybrid contribution -1.456 -0.177 0.730 1.638 sum -6.341 -4.672 -11.024 13.549 Atomic orbital electron populations 1.21812 0.96460 1.00807 1.01166 1.21107 0.93929 0.97240 0.98753 1.21646 1.02564 0.95051 0.99636 1.22272 0.89290 0.98286 0.97539 1.62369 1.06816 1.48147 1.07512 1.20241 0.96210 0.95808 0.83132 1.21285 1.34464 1.05449 0.92986 0.92129 1.24941 0.95563 0.95711 0.98358 1.69959 1.38753 1.28093 1.16991 0.86559 0.78036 0.82236 0.81277 1.19812 1.21296 1.21171 1.21648 0.93852 0.90157 0.96416 0.91936 1.22140 0.96216 1.00839 1.01744 1.21868 1.00093 0.95998 0.95419 1.22211 1.01159 0.95429 0.97467 1.21983 0.95543 0.94394 0.95094 1.60293 1.58782 1.06655 1.06249 1.21898 0.97949 0.96691 0.90367 1.21687 1.00090 0.94631 0.98635 0.92771 0.93429 0.93538 0.92365 0.91217 0.94842 0.93271 0.94766 0.90188 0.97137 0.94252 0.93184 0.92462 0.91104 0.93544 0.91454 0.90714 0.88980 0.95954 0.91132 0.84854 0.95902 0.91499 0.92265 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.09 -1.43 2.58 -90.62 -0.23 -1.66 16 3 C -0.13 -2.11 9.05 37.16 0.34 -1.77 16 4 C 0.05 1.01 3.32 -3.83 -0.01 1.00 16 5 N -0.53 -10.62 3.94 -228.09 -0.90 -11.52 16 6 C 0.17 4.17 3.34 -4.98 -0.02 4.15 16 7 C -0.50 -13.73 8.29 -34.44 -0.29 -14.01 16 8 H 0.06 1.67 7.19 -52.48 -0.38 1.29 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 11 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 C 0.09 1.53 2.27 -67.71 -0.15 1.37 16 16 H 0.06 1.05 7.75 -51.93 -0.40 0.64 16 17 C -0.15 -2.68 7.23 37.16 0.27 -2.41 16 18 C -0.11 -1.76 1.45 -90.50 -0.13 -1.89 16 19 C -0.13 -2.16 3.22 -26.65 -0.09 -2.24 16 20 C 0.06 0.86 6.55 -3.83 -0.03 0.84 16 21 N -0.69 -9.05 6.85 -113.81 -0.78 -9.83 16 22 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16 23 C -0.11 -1.51 5.03 -26.65 -0.13 -1.64 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.89 6.68 -51.92 -0.35 0.55 16 28 H 0.07 1.23 7.65 -51.93 -0.40 0.83 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.63 4.10 -51.93 -0.21 0.41 16 32 H 0.08 1.70 6.53 -51.93 -0.34 1.36 16 33 H 0.01 0.28 4.52 -51.93 -0.23 0.05 16 34 H 0.04 1.05 5.65 -51.93 -0.29 0.75 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.06 1.05 7.98 -51.93 -0.41 0.64 16 37 H 0.07 1.41 4.73 -51.93 -0.25 1.16 16 38 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 39 H 0.07 1.06 5.63 -51.93 -0.29 0.77 16 40 H 0.07 1.43 6.31 -51.93 -0.33 1.11 16 41 H 0.09 1.84 3.94 -51.93 -0.20 1.64 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.33 3.64 8.90 -39.29 -0.35 3.29 16 45 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 1.06 6.26 -51.93 -0.33 0.74 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -27.97 338.36 -9.57 -37.54 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.45 Total: 5.31 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -0.25 Total: -17.74 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.94 Total: -46.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.97 -9.57 -37.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400583000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.061 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds