Wall clock time and date at job start Mon Mar 30 2020 09:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.52991 * 109.47375 * 120.00468 * 2 1 3 5 5 N 1.46901 * 109.47360 * 178.37424 * 4 2 1 6 6 C 1.46901 * 111.00154 * 165.07356 * 5 4 2 7 7 C 1.50699 * 109.47137 * 294.69946 * 6 5 4 8 8 H 1.08004 * 119.99893 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99956 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99939 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00006 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47108 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47381 * 120.00060 * 11 9 7 14 14 H 1.48501 * 109.47164 * 239.99937 * 11 9 7 15 15 C 1.46901 * 111.00298 * 289.03154 * 5 4 2 16 16 H 1.08998 * 109.47315 * 83.47404 * 15 5 4 17 17 C 1.52998 * 109.47430 * 203.47937 * 15 5 4 18 18 C 1.53001 * 109.46686 * 323.47982 * 15 5 4 19 19 C 1.53119 * 109.52194 * 302.08695 * 18 15 5 20 20 C 1.53042 * 109.27813 * 182.44261 * 19 18 15 21 21 N 1.46849 * 109.52121 * 59.18402 * 20 19 18 22 22 C 1.46841 * 111.19693 * 298.25556 * 21 20 19 23 23 C 1.53043 * 109.52522 * 61.74324 * 22 21 20 24 24 H 1.09001 * 109.46966 * 299.99132 * 1 2 3 25 25 H 1.08993 * 109.47450 * 59.99322 * 1 2 3 26 26 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46812 * 240.00537 * 2 1 3 28 28 H 1.09001 * 109.46408 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.47191 * 300.00303 * 3 2 1 30 30 H 1.08997 * 109.46902 * 60.01097 * 3 2 1 31 31 H 1.09006 * 109.47621 * 58.37897 * 4 2 1 32 32 H 1.08997 * 109.47583 * 298.37451 * 4 2 1 33 33 H 1.08998 * 109.47080 * 54.70230 * 6 5 4 34 34 H 1.09005 * 109.46779 * 174.70463 * 6 5 4 35 35 H 0.96995 * 120.00042 * 179.97438 * 10 9 7 36 36 H 1.09002 * 109.46839 * 299.99577 * 17 15 5 37 37 H 1.08998 * 109.47306 * 59.99462 * 17 15 5 38 38 H 1.09001 * 109.47246 * 180.02562 * 17 15 5 39 39 H 1.08998 * 109.52765 * 62.28036 * 18 15 5 40 40 H 1.09005 * 109.50645 * 302.38955 * 19 18 15 41 41 H 1.09004 * 109.50370 * 62.50359 * 19 18 15 42 42 H 1.08995 * 109.46523 * 299.16146 * 20 19 18 43 43 H 1.09004 * 109.45994 * 179.19611 * 20 19 18 44 44 H 1.00903 * 110.99569 * 174.15764 * 21 20 19 45 45 H 1.09001 * 109.46284 * 301.73261 * 22 21 20 46 46 H 1.09001 * 109.46485 * 181.76273 * 22 21 20 47 47 H 1.08992 * 109.50242 * 180.88159 * 23 22 21 48 48 H 1.08996 * 109.50037 * 60.76210 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5085 -0.7554 1.2296 6 6 4.0444 -1.1120 2.5501 7 6 3.7084 -0.0253 3.5387 8 1 3.1520 0.8431 3.2182 9 6 4.1104 -0.1403 4.8526 10 7 4.7875 -1.1981 5.2429 11 14 3.6934 1.2062 6.0781 12 1 2.9315 2.2809 5.3926 13 1 2.8704 0.6387 7.1762 14 1 4.9471 1.7700 6.6398 15 6 4.0001 -1.6761 0.1958 16 1 4.0204 -1.1645 -0.7665 17 6 5.4125 -2.1406 0.5564 18 6 3.0709 -2.8885 0.1092 19 6 3.0007 -3.5780 1.4746 20 6 2.1189 -4.8241 1.3666 21 7 2.6820 -5.7385 0.3650 22 6 2.7155 -5.1148 -0.9639 23 6 3.6151 -3.8773 -0.9256 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6532 -1.7403 1.2638 32 1 1.7008 -0.1911 2.1389 33 1 3.6027 -2.0523 2.8796 34 1 5.1270 -1.2220 2.4852 35 1 5.0707 -1.2788 6.1671 36 1 6.0745 -1.2768 0.6180 37 1 5.3922 -2.6522 1.5186 38 1 5.7775 -2.8234 -0.2109 39 1 2.0738 -2.5630 -0.1872 40 1 4.0037 -3.8679 1.7879 41 1 2.5740 -2.8925 2.2069 42 1 1.1125 -4.5321 1.0668 43 1 2.0785 -5.3253 2.3338 44 1 2.1724 -6.6091 0.3432 45 1 1.7064 -4.8213 -1.2529 46 1 3.1083 -5.8270 -1.6896 47 1 3.6273 -3.4057 -1.9082 48 1 4.6277 -4.1719 -0.6501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400583000.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 09:09:45 Heat of formation + Delta-G solvation = -14.428469 kcal Electronic energy + Delta-G solvation = -23064.903771 eV Core-core repulsion = 20153.814704 eV Total energy + Delta-G solvation = -2911.089067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27832 -38.20159 -35.92123 -34.86436 -32.93406 -31.65638 -30.39489 -29.15195 -27.84916 -26.01451 -25.51009 -24.08044 -23.33959 -21.49420 -20.53005 -19.46560 -18.52850 -17.50525 -16.76034 -16.39098 -16.13511 -15.85651 -15.65486 -15.25397 -14.92845 -14.71565 -14.27824 -13.99742 -13.85887 -13.51174 -13.47436 -13.03735 -12.92889 -12.84197 -12.70337 -12.63769 -12.53255 -12.29845 -12.19825 -12.00561 -11.73002 -11.71554 -11.58755 -11.32697 -11.29696 -11.13192 -10.97919 -10.83119 -10.47326 -9.38013 -8.55879 -8.11557 -6.18467 1.38091 1.39805 1.51793 2.42823 3.19423 3.32803 3.44188 3.86720 3.87230 4.01053 4.09828 4.24526 4.31708 4.36285 4.43030 4.48493 4.50293 4.57715 4.71528 4.74735 4.80538 4.85533 4.91119 4.92111 4.94449 5.00151 5.05485 5.10385 5.15063 5.17641 5.23718 5.28460 5.31753 5.37730 5.42573 5.52341 5.57984 5.61350 5.68252 5.69205 5.76204 6.09362 6.21767 6.55532 6.58416 6.88554 7.01302 7.49045 8.97326 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.007095 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.743133 B = 3945.643292 C = 4816.278529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C -0.128 4.128 4 C 0.061 3.939 5 N -0.532 5.532 6 C 0.190 3.810 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.004 3.996 10 N -0.931 5.931 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.087 3.913 16 H 0.080 0.920 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.118 4.118 20 C 0.066 3.934 21 N -0.697 5.697 22 C 0.061 3.939 23 C -0.109 4.109 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.045 0.955 33 H -0.004 1.004 34 H 0.012 0.988 35 H 0.260 0.740 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.351 0.649 45 H 0.032 0.968 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -5.266 -14.241 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.185 4.185 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.064 3.936 7 C -0.553 4.553 8 H 0.071 0.929 9 C -0.194 4.194 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.021 4.021 16 H 0.098 0.902 17 C -0.201 4.201 18 C -0.123 4.123 19 C -0.156 4.156 20 C -0.063 4.063 21 N -0.329 5.329 22 C -0.068 4.068 23 C -0.147 4.147 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.013 0.987 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.084 0.916 44 H 0.169 0.831 45 H 0.050 0.950 46 H 0.108 0.892 47 H 0.100 0.900 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.303 -4.683 -14.054 16.099 hybrid contribution -0.991 -0.141 1.410 1.730 sum -7.294 -4.823 -12.644 15.373 Atomic orbital electron populations 1.21767 0.94406 1.01640 1.01933 1.21061 0.95564 0.96508 0.97165 1.21596 1.01137 0.95540 1.00239 1.22220 0.88147 0.98445 0.97933 1.62294 1.07967 1.49309 1.05978 1.19841 0.94434 0.94333 0.84996 1.21606 1.33966 1.05770 0.93987 0.92886 1.25734 0.95533 0.97880 1.00247 1.70082 1.39887 1.29872 1.17409 0.85550 0.77883 0.79568 0.78914 1.19232 1.20659 1.20750 1.21744 0.93835 0.90753 0.95800 0.90197 1.22030 0.96524 1.00439 1.01075 1.21738 0.99841 0.95574 0.95110 1.21990 0.99729 0.96219 0.97631 1.21809 0.95259 0.93527 0.95754 1.60223 1.59115 1.07055 1.06530 1.21949 0.98218 0.96519 0.90095 1.21675 0.99639 0.94763 0.98660 0.93554 0.91118 0.92717 0.91113 0.93352 0.92066 0.94789 0.94444 0.93623 0.98673 0.97033 0.93121 0.93959 0.94172 0.90691 0.90912 0.93542 0.92492 0.95051 0.91633 0.83060 0.94966 0.89193 0.90002 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 2 C -0.08 -2.49 2.58 -10.80 -0.03 -2.52 16 3 C -0.13 -3.94 9.05 71.98 0.65 -3.28 16 4 C 0.06 2.28 3.32 86.30 0.29 2.56 16 5 N -0.53 -22.12 3.94 -875.53 -3.45 -25.57 16 6 C 0.19 9.79 3.34 85.56 0.29 10.07 16 7 C -0.51 -29.26 8.29 25.60 0.21 -29.05 16 8 H 0.05 3.03 7.19 -2.91 -0.02 3.01 16 9 C 0.00 0.20 5.46 84.65 0.46 0.67 16 10 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 11 Si 0.95 45.37 29.54 68.60 2.03 47.39 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 15 C 0.09 2.99 2.27 44.91 0.10 3.09 16 16 H 0.08 2.51 7.75 -2.39 -0.02 2.49 16 17 C -0.14 -5.17 7.23 71.98 0.52 -4.64 16 18 C -0.10 -3.07 1.45 -10.71 -0.02 -3.08 16 19 C -0.12 -4.16 3.22 30.65 0.10 -4.06 16 20 C 0.07 1.89 6.55 86.33 0.57 2.45 16 21 N -0.70 -16.85 6.85 -513.99 -3.52 -20.37 16 22 C 0.06 1.29 6.55 86.33 0.57 1.85 16 23 C -0.11 -2.63 5.03 30.65 0.15 -2.48 16 24 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.95 6.68 -2.38 -0.02 1.93 16 28 H 0.05 1.68 7.65 -2.39 -0.02 1.66 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.38 4.10 -2.38 -0.01 1.37 16 32 H 0.05 2.02 6.53 -2.39 -0.02 2.00 16 33 H 0.00 -0.23 4.52 -2.39 -0.01 -0.24 16 34 H 0.01 0.66 5.65 -2.38 -0.01 0.65 16 35 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.04 1.61 7.98 -2.39 -0.02 1.59 16 37 H 0.04 1.69 4.73 -2.39 -0.01 1.67 16 38 H 0.07 2.22 6.34 -2.39 -0.02 2.21 16 39 H 0.07 2.13 5.63 -2.39 -0.01 2.11 16 40 H 0.05 1.88 6.31 -2.38 -0.02 1.86 16 41 H 0.06 2.40 3.94 -2.38 -0.01 2.39 16 42 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.35 6.73 8.90 -89.69 -0.80 5.93 16 45 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.06 1.69 6.26 -2.39 -0.01 1.67 16 Total: -1.00 -62.80 338.36 0.00 -62.80 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.14 Total: 22.99 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.52 Total: -31.19 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -6.69 Total: -101.99 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -62.80 0.00 -62.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400583000.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.367 kcal (2) G-P(sol) polarization free energy of solvation -62.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds