Wall clock time and date at job start Mon Mar 30 2020 08:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50246 * 2 1 4 4 C 1.53124 * 109.50222 * 120.08006 * 2 1 3 5 5 C 1.53111 * 109.16163 * 62.32609 * 4 2 1 6 6 C 1.53031 * 109.28138 * 57.65099 * 5 4 2 7 7 N 1.46848 * 109.52745 * 300.82533 * 6 5 4 8 8 C 1.46900 * 111.00411 * 185.84205 * 7 6 5 9 9 C 1.52994 * 109.47533 * 64.83108 * 8 7 6 10 10 C 1.53005 * 109.47262 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47262 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47355 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99799 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00486 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99377 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47077 * 89.99792 * 16 14 12 18 18 H 1.48500 * 109.46957 * 209.99712 * 16 14 12 19 19 H 1.48493 * 109.47357 * 330.00038 * 16 14 12 20 20 C 1.46841 * 111.19867 * 61.73329 * 7 6 5 21 21 H 1.09003 * 109.45926 * 58.28324 * 20 7 6 22 22 C 1.53001 * 109.46360 * 178.24402 * 20 7 6 23 23 C 1.52995 * 109.47251 * 181.23317 * 22 20 7 24 24 N 1.46905 * 109.47333 * 182.76122 * 23 22 20 25 25 H 1.09004 * 109.47123 * 300.00296 * 1 2 3 26 26 H 1.08999 * 109.47190 * 59.99462 * 1 2 3 27 27 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.52098 * 182.23050 * 4 2 1 29 29 H 1.09001 * 109.52006 * 302.35660 * 4 2 1 30 30 H 1.08994 * 109.50467 * 177.59745 * 5 4 2 31 31 H 1.09005 * 109.50553 * 297.71458 * 5 4 2 32 32 H 1.08999 * 109.46140 * 60.83563 * 6 5 4 33 33 H 1.09006 * 109.46579 * 180.80717 * 6 5 4 34 34 H 1.08999 * 109.47411 * 184.83837 * 8 7 6 35 35 H 1.09008 * 109.46523 * 304.83391 * 8 7 6 36 36 H 1.09000 * 109.47280 * 300.00208 * 9 8 7 37 37 H 1.08995 * 109.47105 * 60.00260 * 9 8 7 38 38 H 1.09000 * 109.46873 * 300.00127 * 10 9 8 39 39 H 1.08999 * 109.46709 * 60.00217 * 10 9 8 40 40 H 1.08999 * 109.47368 * 300.00425 * 11 10 9 41 41 H 1.09004 * 109.47009 * 59.99719 * 11 10 9 42 42 H 0.96996 * 119.99300 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.47335 * 301.23719 * 22 20 7 44 44 H 1.09007 * 109.47007 * 61.23269 * 22 20 7 45 45 H 1.09000 * 109.47480 * 302.76234 * 23 22 20 46 46 H 1.09008 * 109.47190 * 62.76015 * 23 22 20 47 47 H 1.00901 * 111.00346 * 180.02562 * 24 23 22 48 48 H 1.00899 * 110.99569 * 303.95545 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 1.5758 -2.1816 1.2110 6 6 2.0861 -2.8417 -0.0719 7 7 1.5691 -2.1136 -1.2376 8 6 1.9245 -2.7997 -2.4870 9 6 1.2281 -4.1610 -2.5373 10 6 1.5988 -4.8758 -3.8383 11 6 0.9019 -6.2368 -3.8889 12 6 1.2675 -6.9411 -5.1700 13 1 1.9303 -6.4653 -5.8776 14 6 0.7550 -8.1925 -5.4394 15 7 -0.0526 -8.7716 -4.5779 16 14 1.2077 -9.0652 -7.0277 17 1 2.4278 -9.8839 -6.8123 18 1 0.0876 -9.9463 -7.4449 19 1 1.4677 -8.0591 -8.0885 20 6 2.0417 -0.7233 -1.2478 21 1 3.1316 -0.7103 -1.2538 22 6 1.5168 -0.0155 -2.4986 23 6 2.0342 1.4240 -2.5250 24 7 1.4772 2.1233 -3.6906 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1305 -0.6891 1.2696 29 1 1.6445 -0.2365 2.1399 30 1 1.9724 -2.7128 2.0762 31 1 0.4865 -2.2166 1.2297 32 1 3.1758 -2.8187 -0.0834 33 1 1.7444 -3.8761 -0.1089 34 1 1.6047 -2.1963 -3.3366 35 1 3.0044 -2.9422 -2.5286 36 1 1.5480 -4.7644 -1.6878 37 1 0.1483 -4.0184 -2.4957 38 1 1.2792 -4.2725 -4.6881 39 1 2.6786 -5.0184 -3.8795 40 1 1.2209 -6.8403 -3.0391 41 1 -0.1780 -6.0938 -3.8478 42 1 -0.4134 -9.6518 -4.7675 43 1 1.8639 -0.5428 -3.3871 44 1 0.4268 -0.0096 -2.4823 45 1 1.7283 1.9370 -1.6132 46 1 3.1223 1.4179 -2.5908 47 1 1.8046 3.0769 -3.7308 48 1 1.6927 1.6311 -4.5446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404371413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:41:49 Heat of formation + Delta-G solvation = -32.144827 kcal Electronic energy + Delta-G solvation = -21388.729312 eV Core-core repulsion = 18476.872006 eV Total energy + Delta-G solvation = -2911.857306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.00841 -35.83696 -35.37560 -33.61948 -32.26090 -31.87010 -28.86386 -27.88322 -26.49674 -24.99592 -23.51304 -22.87786 -21.01736 -20.67256 -19.92218 -18.51166 -16.41114 -16.18377 -16.08780 -15.34764 -15.24333 -14.73876 -14.42426 -14.26684 -14.20961 -13.68603 -13.50663 -13.11511 -12.66728 -12.37505 -12.18585 -12.11323 -11.72176 -11.60560 -11.46861 -11.39440 -11.24316 -11.00436 -10.84038 -10.68227 -10.48849 -10.40166 -10.35470 -10.06007 -9.97837 -9.54557 -9.21078 -8.96557 -8.94891 -8.29914 -8.14212 -5.95036 -3.97062 3.34362 3.40401 3.43995 3.86065 4.32543 4.49929 4.57728 4.73091 4.79873 4.94844 5.07345 5.13790 5.22250 5.30533 5.40269 5.41676 5.45053 5.50201 5.55557 5.56136 5.65031 5.78257 5.80114 5.87524 5.90956 5.97128 6.04976 6.05344 6.13841 6.20732 6.24493 6.29953 6.36761 6.52850 6.59387 6.86304 6.88207 7.02823 7.14532 7.17580 7.27499 7.34133 7.74445 7.90970 8.06507 8.49399 9.10496 9.66582 11.16356 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.003524 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.272961 B = 7943.202560 C = 8830.615792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.053 3.947 7 N -0.528 5.528 8 C 0.051 3.949 9 C -0.113 4.113 10 C -0.109 4.109 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.093 3.907 21 H 0.033 0.967 22 C -0.120 4.120 23 C 0.061 3.939 24 N -0.851 5.851 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.026 0.974 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.021 0.979 47 H 0.339 0.661 48 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 20.885 10.191 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.075 4.075 7 N -0.253 5.253 8 C -0.076 4.076 9 C -0.151 4.151 10 C -0.147 4.147 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.016 4.016 21 H 0.051 0.949 22 C -0.158 4.158 23 C -0.070 4.070 24 N -0.381 5.381 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.039 0.961 47 H 0.151 0.849 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.580 20.595 10.602 23.439 hybrid contribution 2.226 -0.546 -1.230 2.601 sum 5.806 20.049 9.372 22.880 Atomic orbital electron populations 1.21820 0.94295 1.03102 1.00701 1.21193 0.97166 0.98062 0.93752 0.91380 1.21629 1.00004 0.96151 0.97648 1.21623 1.02090 0.95192 0.96685 1.22136 0.96689 0.98630 0.90066 1.61911 1.59845 1.00944 1.02590 1.22326 0.97513 0.96269 0.91458 1.21667 1.00656 0.93492 0.99243 1.21593 0.99765 0.98706 0.94631 1.19081 0.95641 0.90103 0.96717 1.21295 1.28288 1.01635 1.04570 0.92826 1.25032 0.95204 0.97533 0.96755 1.69973 1.32447 1.15573 1.35564 0.86618 0.77980 0.79616 0.83931 1.20738 1.21226 1.19908 1.21512 0.96167 0.89047 0.94854 0.94915 1.21781 1.03086 0.93665 0.97229 1.21847 0.95775 0.95086 0.94257 1.58709 1.67135 1.06309 1.05898 0.93867 0.92484 0.90923 0.92674 0.92022 0.91921 0.90707 0.95463 0.89888 0.90469 0.95569 0.92679 0.91694 0.93541 0.93842 0.96804 0.96598 0.93076 0.91657 0.89570 0.90763 0.96070 0.84899 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.38 37.16 0.31 -1.12 16 2 C -0.08 -0.80 2.40 -90.54 -0.22 -1.01 16 3 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 4 C -0.12 -1.08 5.51 -26.61 -0.15 -1.23 16 5 C -0.12 -1.22 5.74 -26.66 -0.15 -1.37 16 6 C 0.05 0.65 5.29 -3.84 -0.02 0.63 16 7 N -0.53 -6.79 3.78 -226.70 -0.86 -7.65 16 8 C 0.05 0.75 4.66 -3.83 -0.02 0.73 16 9 C -0.11 -1.97 5.12 -26.73 -0.14 -2.11 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 12 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.09 1.02 1.65 -67.73 -0.11 0.91 16 21 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 22 C -0.12 -1.27 4.30 -26.73 -0.11 -1.38 16 23 C 0.06 0.55 6.53 -3.82 -0.02 0.52 16 24 N -0.85 -7.21 9.62 -10.37 -0.10 -7.31 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.60 6.40 -51.93 -0.33 0.26 16 27 H 0.07 0.85 6.01 -51.93 -0.31 0.53 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.81 6.58 -51.93 -0.34 0.47 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 1.11 6.17 -51.93 -0.32 0.79 16 34 H 0.08 1.10 5.68 -51.93 -0.29 0.81 16 35 H 0.03 0.39 8.13 -51.92 -0.42 -0.04 16 36 H 0.05 0.97 6.40 -51.93 -0.33 0.64 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.06 0.74 6.06 -51.93 -0.31 0.43 16 44 H 0.09 1.03 6.36 -51.93 -0.33 0.70 16 45 H 0.07 0.64 6.34 -51.93 -0.33 0.32 16 46 H 0.02 0.18 8.14 -51.92 -0.42 -0.24 16 47 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 48 H 0.34 2.70 8.99 -39.29 -0.35 2.35 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -30.38 354.21 -10.21 -40.60 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.99 Total: 0.09 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.32 Total: -21.30 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.22 Total: -41.72 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.38 -10.21 -40.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404371413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.451 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds