Wall clock time and date at job start Mon Mar 30 2020 08:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.50246 * 2 1 4 4 C 1.53124 * 109.50222 * 120.08006 * 2 1 3 5 5 C 1.53111 * 109.16163 * 62.32609 * 4 2 1 6 6 C 1.53031 * 109.28138 * 57.65099 * 5 4 2 7 7 N 1.46848 * 109.52745 * 300.82533 * 6 5 4 8 8 C 1.46900 * 111.00411 * 185.84205 * 7 6 5 9 9 C 1.52994 * 109.47533 * 64.83108 * 8 7 6 10 10 C 1.53005 * 109.47262 * 180.02562 * 9 8 7 11 11 C 1.52994 * 109.47262 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47355 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99799 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00486 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99377 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47077 * 89.99792 * 16 14 12 18 18 H 1.48500 * 109.46957 * 209.99712 * 16 14 12 19 19 H 1.48493 * 109.47357 * 330.00038 * 16 14 12 20 20 C 1.46841 * 111.19867 * 61.73329 * 7 6 5 21 21 H 1.09003 * 109.45926 * 58.28324 * 20 7 6 22 22 C 1.53001 * 109.46360 * 178.24402 * 20 7 6 23 23 C 1.52995 * 109.47251 * 181.23317 * 22 20 7 24 24 N 1.46905 * 109.47333 * 182.76122 * 23 22 20 25 25 H 1.09004 * 109.47123 * 300.00296 * 1 2 3 26 26 H 1.08999 * 109.47190 * 59.99462 * 1 2 3 27 27 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.52098 * 182.23050 * 4 2 1 29 29 H 1.09001 * 109.52006 * 302.35660 * 4 2 1 30 30 H 1.08994 * 109.50467 * 177.59745 * 5 4 2 31 31 H 1.09005 * 109.50553 * 297.71458 * 5 4 2 32 32 H 1.08999 * 109.46140 * 60.83563 * 6 5 4 33 33 H 1.09006 * 109.46579 * 180.80717 * 6 5 4 34 34 H 1.08999 * 109.47411 * 184.83837 * 8 7 6 35 35 H 1.09008 * 109.46523 * 304.83391 * 8 7 6 36 36 H 1.09000 * 109.47280 * 300.00208 * 9 8 7 37 37 H 1.08995 * 109.47105 * 60.00260 * 9 8 7 38 38 H 1.09000 * 109.46873 * 300.00127 * 10 9 8 39 39 H 1.08999 * 109.46709 * 60.00217 * 10 9 8 40 40 H 1.08999 * 109.47368 * 300.00425 * 11 10 9 41 41 H 1.09004 * 109.47009 * 59.99719 * 11 10 9 42 42 H 0.96996 * 119.99300 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.47335 * 301.23719 * 22 20 7 44 44 H 1.09007 * 109.47007 * 61.23269 * 22 20 7 45 45 H 1.09000 * 109.47480 * 302.76234 * 23 22 20 46 46 H 1.09008 * 109.47190 * 62.76015 * 23 22 20 47 47 H 1.00901 * 111.00346 * 180.02562 * 24 23 22 48 48 H 1.00899 * 110.99569 * 303.95545 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 1.5758 -2.1816 1.2110 6 6 2.0861 -2.8417 -0.0719 7 7 1.5691 -2.1136 -1.2376 8 6 1.9245 -2.7997 -2.4870 9 6 1.2281 -4.1610 -2.5373 10 6 1.5988 -4.8758 -3.8383 11 6 0.9019 -6.2368 -3.8889 12 6 1.2675 -6.9411 -5.1700 13 1 1.9303 -6.4653 -5.8776 14 6 0.7550 -8.1925 -5.4394 15 7 -0.0526 -8.7716 -4.5779 16 14 1.2077 -9.0652 -7.0277 17 1 2.4278 -9.8839 -6.8123 18 1 0.0876 -9.9463 -7.4449 19 1 1.4677 -8.0591 -8.0885 20 6 2.0417 -0.7233 -1.2478 21 1 3.1316 -0.7103 -1.2538 22 6 1.5168 -0.0155 -2.4986 23 6 2.0342 1.4240 -2.5250 24 7 1.4772 2.1233 -3.6906 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1305 -0.6891 1.2696 29 1 1.6445 -0.2365 2.1399 30 1 1.9724 -2.7128 2.0762 31 1 0.4865 -2.2166 1.2297 32 1 3.1758 -2.8187 -0.0834 33 1 1.7444 -3.8761 -0.1089 34 1 1.6047 -2.1963 -3.3366 35 1 3.0044 -2.9422 -2.5286 36 1 1.5480 -4.7644 -1.6878 37 1 0.1483 -4.0184 -2.4957 38 1 1.2792 -4.2725 -4.6881 39 1 2.6786 -5.0184 -3.8795 40 1 1.2209 -6.8403 -3.0391 41 1 -0.1780 -6.0938 -3.8478 42 1 -0.4134 -9.6518 -4.7675 43 1 1.8639 -0.5428 -3.3871 44 1 0.4268 -0.0096 -2.4823 45 1 1.7283 1.9370 -1.6132 46 1 3.1223 1.4179 -2.5908 47 1 1.8046 3.0769 -3.7308 48 1 1.6927 1.6311 -4.5446 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404371413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:41:48 Heat of formation + Delta-G solvation = -51.120173 kcal Electronic energy + Delta-G solvation = -21389.552145 eV Core-core repulsion = 18476.872006 eV Total energy + Delta-G solvation = -2912.680139 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92679 -37.10787 -36.29294 -35.31983 -33.66196 -33.05874 -30.31301 -29.02395 -27.33775 -26.65223 -24.55995 -24.07217 -22.36359 -21.64367 -21.53400 -19.37374 -18.42543 -17.25721 -16.93791 -16.54713 -16.43991 -16.07444 -15.84054 -15.21223 -15.14700 -14.71021 -14.50488 -14.45576 -13.98972 -13.77988 -13.56192 -13.31243 -13.03936 -12.86463 -12.81435 -12.44204 -12.38272 -12.31652 -12.21716 -12.17392 -11.91470 -11.70353 -11.44351 -11.31637 -11.22698 -11.08963 -10.93150 -10.76058 -10.55618 -9.59741 -9.17219 -8.19995 -6.31652 1.39077 1.40983 1.52229 2.40694 2.87936 3.12636 3.58529 3.76696 3.90745 3.96216 4.07256 4.17204 4.23495 4.29602 4.37848 4.40179 4.51825 4.55162 4.60739 4.63174 4.69098 4.72296 4.80070 4.83584 4.90205 4.97152 4.99229 5.10500 5.16346 5.18667 5.23356 5.23820 5.29547 5.34982 5.36102 5.40892 5.50082 5.55020 5.70437 5.77295 5.86431 6.19456 6.22220 6.25373 6.32303 6.60237 6.85727 7.37653 8.92001 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.003524 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.272961 B = 7943.202560 C = 8830.615792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.113 4.113 5 C -0.115 4.115 6 C 0.050 3.950 7 N -0.535 5.535 8 C 0.063 3.937 9 C -0.101 4.101 10 C -0.096 4.096 11 C 0.024 3.976 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.094 3.906 21 H 0.033 0.967 22 C -0.114 4.114 23 C 0.068 3.932 24 N -0.860 5.860 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.027 0.973 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.048 0.952 40 H -0.012 1.012 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.350 0.650 48 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 22.395 9.991 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.077 4.077 7 N -0.260 5.260 8 C -0.065 4.065 9 C -0.139 4.139 10 C -0.134 4.134 11 C -0.013 4.013 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.014 4.014 21 H 0.051 0.949 22 C -0.152 4.152 23 C -0.063 4.063 24 N -0.391 5.391 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.006 0.994 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.046 0.954 47 H 0.164 0.836 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.718 22.132 10.408 24.908 hybrid contribution 1.836 -1.025 -1.135 2.389 sum 6.554 21.107 9.273 23.968 Atomic orbital electron populations 1.21754 0.94703 1.01922 1.01038 1.21206 0.96703 0.98783 0.93145 0.89678 1.21622 1.00353 0.95127 0.97999 1.21600 1.01603 0.96174 0.95869 1.22158 0.96706 0.97977 0.90889 1.61882 1.60257 1.01933 1.01900 1.22096 0.96997 0.94586 0.92798 1.21477 1.00217 0.95069 0.97126 1.21393 0.99262 0.96008 0.96708 1.19002 0.94403 0.92717 0.95156 1.21739 1.28643 1.02421 1.05505 0.92220 1.26026 0.94872 0.98407 1.00693 1.70111 1.33450 1.16116 1.37794 0.85427 0.77943 0.78393 0.79170 1.19695 1.20639 1.18663 1.21578 0.96133 0.87809 0.95916 0.94909 1.21702 1.02032 0.94848 0.96614 1.21760 0.96016 0.93860 0.94702 1.58697 1.67401 1.07097 1.05919 0.92594 0.93069 0.92828 0.92133 0.90509 0.90759 0.91464 0.95380 0.91655 0.90037 0.95443 0.93100 0.92829 0.93099 0.93360 0.99364 0.99295 0.92769 0.92611 0.91090 0.90204 0.95430 0.83632 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.38 71.98 0.60 -1.97 16 2 C -0.08 -1.37 2.40 -10.74 -0.03 -1.39 16 3 H 0.09 1.22 6.44 -2.39 -0.02 1.20 16 4 C -0.11 -1.83 5.51 30.67 0.17 -1.66 16 5 C -0.11 -2.22 5.74 30.64 0.18 -2.05 16 6 C 0.05 1.22 5.29 86.32 0.46 1.68 16 7 N -0.54 -13.51 3.78 -871.13 -3.30 -16.81 16 8 C 0.06 1.81 4.66 86.30 0.40 2.21 16 9 C -0.10 -3.61 5.12 30.59 0.16 -3.46 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.93 16 11 C 0.02 1.34 4.97 29.84 0.15 1.49 16 12 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 14 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 15 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 16 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 C 0.09 1.94 1.65 44.94 0.07 2.01 16 21 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 22 C -0.11 -2.28 4.30 30.59 0.13 -2.15 16 23 C 0.07 1.07 6.53 86.30 0.56 1.64 16 24 N -0.86 -13.19 9.62 -186.71 -1.80 -14.99 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.05 1.01 6.40 -2.39 -0.02 1.00 16 27 H 0.05 1.22 6.01 -2.39 -0.01 1.20 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.41 6.58 -2.38 -0.02 1.40 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 1.79 6.17 -2.38 -0.01 1.77 16 34 H 0.08 2.29 5.68 -2.39 -0.01 2.27 16 35 H 0.03 0.79 8.13 -2.38 -0.02 0.77 16 36 H 0.05 1.85 6.40 -2.39 -0.02 1.83 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.06 1.21 6.06 -2.39 -0.01 1.20 16 44 H 0.07 1.66 6.36 -2.38 -0.02 1.64 16 45 H 0.08 1.18 6.34 -2.39 -0.02 1.17 16 46 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.35 3.97 9.08 -89.69 -0.81 3.16 16 48 H 0.34 4.99 8.99 -89.69 -0.81 4.19 16 Total: -1.00 -65.49 354.21 0.23 -65.26 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.69 Total: 16.65 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 3.71 Total: -39.14 kcal Atomic # 7 Polarization: -85.13 SS G_CDS: -4.81 Total: -89.94 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.49 0.23 -65.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404371413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.135 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds