Wall clock time and date at job start Mon Mar 30 2020 07:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00082 * 2 1 4 4 C 1.46897 * 111.00039 * 123.95474 * 2 1 3 5 5 H 1.08999 * 112.84910 * 311.19857 * 4 2 1 6 6 C 1.53781 * 113.69238 * 82.46422 * 4 2 1 7 7 C 1.54049 * 87.08031 * 139.98787 * 6 4 2 8 8 H 1.09000 * 113.61076 * 89.06984 * 7 6 4 9 9 C 1.52990 * 113.70090 * 220.05426 * 7 6 4 10 10 N 1.46901 * 109.47276 * 272.42503 * 9 7 6 11 11 C 1.46896 * 111.00429 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47346 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47417 * 300.00052 * 12 11 10 14 14 C 1.52995 * 109.47145 * 60.00209 * 12 11 10 15 15 C 1.52999 * 109.47268 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47421 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00005 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99760 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00312 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46832 * 89.99880 * 20 18 16 22 22 H 1.48493 * 109.47307 * 209.99963 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00472 * 20 18 16 24 24 C 1.53781 * 113.61516 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.46699 * 296.04532 * 1 2 3 26 26 H 1.09001 * 109.46883 * 56.04277 * 1 2 3 27 27 H 1.08996 * 109.47000 * 176.04728 * 1 2 3 28 28 H 1.08998 * 109.47428 * 183.95233 * 3 2 1 29 29 H 1.09000 * 109.46999 * 303.95751 * 3 2 1 30 30 H 1.08999 * 109.47177 * 63.95253 * 3 2 1 31 31 H 1.09005 * 113.61471 * 254.54369 * 6 4 2 32 32 H 1.08996 * 113.61178 * 25.35712 * 6 4 2 33 33 H 1.09007 * 109.47036 * 32.41747 * 9 7 6 34 34 H 1.08994 * 109.47734 * 152.42153 * 9 7 6 35 35 H 1.00905 * 111.00058 * 56.03938 * 10 9 7 36 36 H 1.09006 * 109.46905 * 299.99844 * 11 10 9 37 37 H 1.08998 * 109.47088 * 59.99460 * 11 10 9 38 38 H 1.09008 * 109.47146 * 59.99405 * 13 12 11 39 39 H 1.08997 * 109.47464 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46850 * 300.00329 * 13 12 11 41 41 H 1.08998 * 109.47589 * 59.99736 * 14 12 11 42 42 H 1.09000 * 109.47659 * 180.02562 * 14 12 11 43 43 H 1.09006 * 109.47003 * 300.00007 * 14 12 11 44 44 H 1.09006 * 109.46984 * 300.00123 * 15 12 11 45 45 H 1.08998 * 109.47088 * 59.99787 * 15 12 11 46 46 H 0.96999 * 120.00001 * 180.02562 * 19 18 16 47 47 H 1.09002 * 113.61445 * 334.48392 * 24 4 2 48 48 H 1.09002 * 113.61408 * 105.30123 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5295 -0.4922 2.0841 6 6 2.0445 -2.2831 0.8912 7 6 3.4022 -2.2779 1.6191 8 1 3.3201 -2.4166 2.6971 9 6 4.4469 -3.1938 0.9786 10 7 4.3171 -4.5478 1.5335 11 6 5.3063 -5.4572 0.9398 12 6 5.1407 -6.8541 1.5416 13 6 5.3543 -6.7861 3.0551 14 6 3.7313 -7.3720 1.2482 15 6 6.1706 -7.8014 0.9228 16 6 6.0071 -9.1775 1.5150 17 1 5.2446 -9.3584 2.2582 18 6 6.8309 -10.2054 1.1082 19 7 6.6879 -11.4064 1.6247 20 14 8.1493 -9.8927 -0.1777 21 1 9.4083 -9.4815 0.4941 22 1 8.3864 -11.1350 -0.9558 23 1 7.7015 -8.8128 -1.0933 24 6 3.5317 -0.8046 1.1961 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.2680 -2.8366 1.4193 32 1 2.1137 -2.5523 -0.1627 33 1 4.2894 -3.2265 -0.0995 34 1 5.4449 -2.8093 1.1886 35 1 3.3804 -4.9016 1.4086 36 1 5.1543 -5.5054 -0.1385 37 1 6.3104 -5.0885 1.1491 38 1 4.6203 -6.1112 3.4956 39 1 5.2367 -7.7813 3.4837 40 1 6.3584 -6.4171 3.2641 41 1 3.5790 -7.4205 0.1700 42 1 3.6131 -8.3670 1.6773 43 1 2.9972 -6.6972 1.6887 44 1 6.0179 -7.8498 -0.1555 45 1 7.1748 -7.4326 1.1313 46 1 7.2677 -12.1295 1.3388 47 1 4.0092 -0.6694 0.2256 48 1 3.9554 -0.1637 1.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594522993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:50 Heat of formation + Delta-G solvation = 7.118839 kcal Electronic energy + Delta-G solvation = -20947.024823 eV Core-core repulsion = 18036.870118 eV Total energy + Delta-G solvation = -2910.154706 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83997 -37.66513 -35.88740 -33.71583 -32.04015 -28.22183 -28.15965 -27.18409 -26.33132 -25.53686 -24.96260 -23.71553 -21.75380 -20.89929 -19.55027 -17.80881 -16.77371 -16.22924 -15.77259 -15.46621 -15.12530 -14.69152 -14.33045 -14.12542 -13.69464 -13.28493 -13.00538 -12.76208 -12.64929 -12.55996 -12.49942 -12.23432 -12.13532 -11.94856 -11.74413 -11.32902 -11.05783 -10.92293 -10.87375 -10.78103 -10.54037 -10.45639 -10.29444 -10.23867 -9.74501 -9.64842 -9.22299 -8.85987 -8.68065 -8.46794 -8.08060 -5.97147 -3.93017 3.34589 3.42049 3.45875 3.65755 4.22636 4.39379 4.51090 4.58161 4.67112 4.83011 4.85991 5.03376 5.21151 5.23278 5.30938 5.36176 5.41349 5.53853 5.57106 5.57602 5.63188 5.64981 5.69393 5.73421 5.84261 5.89764 5.95108 6.09683 6.20613 6.28215 6.34306 6.47330 6.64190 6.69234 6.74396 6.83087 6.84081 7.12212 7.18258 7.24370 7.37049 7.38403 7.51159 7.71723 7.88942 8.63177 9.09001 9.66186 11.16023 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.040594 B = 0.002981 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.599518 B = 9389.159285 C = 9534.123385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.537 5.537 3 C 0.024 3.976 4 C 0.051 3.949 5 H 0.064 0.936 6 C -0.123 4.123 7 C -0.105 4.105 8 H 0.098 0.902 9 C 0.071 3.929 10 N -0.685 5.685 11 C 0.067 3.933 12 C -0.049 4.049 13 C -0.117 4.117 14 C -0.130 4.130 15 C -0.005 4.005 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 C -0.124 4.124 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.339 0.661 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.069 0.931 43 H 0.035 0.965 44 H 0.012 0.988 45 H 0.010 0.990 46 H 0.261 0.739 47 H 0.088 0.912 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 24.010 -2.091 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.261 5.261 3 C -0.124 4.124 4 C -0.057 4.057 5 H 0.082 0.918 6 C -0.161 4.161 7 C -0.124 4.124 8 H 0.116 0.884 9 C -0.059 4.059 10 N -0.317 5.317 11 C -0.062 4.062 12 C -0.049 4.049 13 C -0.175 4.175 14 C -0.187 4.187 15 C -0.043 4.043 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.704 3.296 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.162 4.162 25 H 0.042 0.958 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.158 0.842 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.435 23.748 -1.986 25.630 hybrid contribution 0.141 0.343 -0.894 0.968 sum -9.294 24.090 -2.880 25.981 Atomic orbital electron populations 1.22360 0.87519 1.02350 1.00183 1.62221 1.07796 1.13672 1.42362 1.22350 1.01108 0.88846 1.00143 1.23169 0.95851 0.94923 0.91776 0.91811 1.23139 0.97354 0.94217 1.01361 1.22477 0.95056 0.94222 1.00651 0.88398 1.21873 0.98719 0.89591 0.95724 1.60558 1.08753 1.01689 1.60694 1.22123 0.95398 0.93253 0.95380 1.20410 0.96425 0.91867 0.96209 1.21611 0.99837 1.01170 0.94842 1.21774 0.95392 1.01545 1.00028 1.19637 0.93629 0.95324 0.95699 1.21146 1.18038 0.91676 1.23500 0.90423 1.25021 0.97267 0.95134 0.96235 1.69911 1.39643 1.01173 1.43892 0.86843 0.82657 0.77601 0.82535 1.20458 1.21608 1.19178 1.23050 0.94616 0.96619 1.01936 0.95832 0.91553 0.91240 0.91148 0.91613 0.95877 0.91692 0.89380 0.95509 0.91342 0.84215 0.96022 0.91723 0.93661 0.92197 0.94286 0.94188 0.91218 0.94569 0.96966 0.97179 0.92925 0.89347 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.56 60.07 0.57 0.76 16 2 N -0.54 -4.72 4.98 -242.20 -1.21 -5.93 16 3 C 0.02 0.17 9.33 60.06 0.56 0.73 16 4 C 0.05 0.45 3.21 -66.90 -0.22 0.23 16 5 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 6 C -0.12 -1.16 7.35 -25.78 -0.19 -1.35 16 7 C -0.10 -1.03 3.91 -89.65 -0.35 -1.39 16 8 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 9 C 0.07 0.83 5.53 -3.83 -0.02 0.81 16 10 N -0.69 -9.63 5.71 -113.79 -0.65 -10.28 16 11 C 0.07 1.12 4.65 -3.83 -0.02 1.11 16 12 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 13 C -0.12 -2.28 8.07 37.16 0.30 -1.98 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 15 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 16 C -0.51 -14.08 8.20 -34.44 -0.28 -14.36 16 17 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 18 C 0.06 1.85 5.47 -17.82 -0.10 1.76 16 19 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 20 Si 0.88 21.98 27.47 -169.99 -4.67 17.32 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 24 C -0.12 -1.08 6.16 -25.90 -0.16 -1.24 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 27 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.07 0.50 7.05 -51.93 -0.37 0.14 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 30 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.92 7.91 -51.93 -0.41 0.51 16 33 H 0.03 0.33 7.85 -51.93 -0.41 -0.08 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.34 4.63 6.77 -39.29 -0.27 4.37 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.79 7.60 -51.92 -0.39 0.40 16 39 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 43 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 44 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 45 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.09 0.81 7.85 -51.93 -0.41 0.40 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 363.64 15.07 5.48 5.48 Total: -1.00 -29.57 363.64 -9.50 -39.06 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.44 Total: -0.14 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 0.21 Total: -18.30 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -1.08 Total: -43.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.57 -9.50 -39.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594522993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.183 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds