Wall clock time and date at job start Mon Mar 30 2020 07:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 111.00082 * 2 1 4 4 C 1.46897 * 111.00039 * 123.95474 * 2 1 3 5 5 H 1.08999 * 112.84910 * 311.19857 * 4 2 1 6 6 C 1.53781 * 113.69238 * 82.46422 * 4 2 1 7 7 C 1.54049 * 87.08031 * 139.98787 * 6 4 2 8 8 H 1.09000 * 113.61076 * 89.06984 * 7 6 4 9 9 C 1.52990 * 113.70090 * 220.05426 * 7 6 4 10 10 N 1.46901 * 109.47276 * 272.42503 * 9 7 6 11 11 C 1.46896 * 111.00429 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47346 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47417 * 300.00052 * 12 11 10 14 14 C 1.52995 * 109.47145 * 60.00209 * 12 11 10 15 15 C 1.52999 * 109.47268 * 179.97438 * 12 11 10 16 16 C 1.50703 * 109.47421 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99911 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00005 * 180.02562 * 16 15 12 19 19 N 1.31514 * 119.99760 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00312 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46832 * 89.99880 * 20 18 16 22 22 H 1.48493 * 109.47307 * 209.99963 * 20 18 16 23 23 H 1.48498 * 109.47155 * 330.00472 * 20 18 16 24 24 C 1.53781 * 113.61516 * 180.02562 * 4 2 1 25 25 H 1.09000 * 109.46699 * 296.04532 * 1 2 3 26 26 H 1.09001 * 109.46883 * 56.04277 * 1 2 3 27 27 H 1.08996 * 109.47000 * 176.04728 * 1 2 3 28 28 H 1.08998 * 109.47428 * 183.95233 * 3 2 1 29 29 H 1.09000 * 109.46999 * 303.95751 * 3 2 1 30 30 H 1.08999 * 109.47177 * 63.95253 * 3 2 1 31 31 H 1.09005 * 113.61471 * 254.54369 * 6 4 2 32 32 H 1.08996 * 113.61178 * 25.35712 * 6 4 2 33 33 H 1.09007 * 109.47036 * 32.41747 * 9 7 6 34 34 H 1.08994 * 109.47734 * 152.42153 * 9 7 6 35 35 H 1.00905 * 111.00058 * 56.03938 * 10 9 7 36 36 H 1.09006 * 109.46905 * 299.99844 * 11 10 9 37 37 H 1.08998 * 109.47088 * 59.99460 * 11 10 9 38 38 H 1.09008 * 109.47146 * 59.99405 * 13 12 11 39 39 H 1.08997 * 109.47464 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46850 * 300.00329 * 13 12 11 41 41 H 1.08998 * 109.47589 * 59.99736 * 14 12 11 42 42 H 1.09000 * 109.47659 * 180.02562 * 14 12 11 43 43 H 1.09006 * 109.47003 * 300.00007 * 14 12 11 44 44 H 1.09006 * 109.46984 * 300.00123 * 15 12 11 45 45 H 1.08998 * 109.47088 * 59.99787 * 15 12 11 46 46 H 0.96999 * 120.00001 * 180.02562 * 19 18 16 47 47 H 1.09002 * 113.61445 * 334.48392 * 24 4 2 48 48 H 1.09002 * 113.61408 * 105.30123 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.5295 -0.4922 2.0841 6 6 2.0445 -2.2831 0.8912 7 6 3.4022 -2.2779 1.6191 8 1 3.3201 -2.4166 2.6971 9 6 4.4469 -3.1938 0.9786 10 7 4.3171 -4.5478 1.5335 11 6 5.3063 -5.4572 0.9398 12 6 5.1407 -6.8541 1.5416 13 6 5.3543 -6.7861 3.0551 14 6 3.7313 -7.3720 1.2482 15 6 6.1706 -7.8014 0.9228 16 6 6.0071 -9.1775 1.5150 17 1 5.2446 -9.3584 2.2582 18 6 6.8309 -10.2054 1.1082 19 7 6.6879 -11.4064 1.6247 20 14 8.1493 -9.8927 -0.1777 21 1 9.4083 -9.4815 0.4941 22 1 8.3864 -11.1350 -0.9558 23 1 7.7015 -8.8128 -1.0933 24 6 3.5317 -0.8046 1.1961 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9233 31 1 1.2680 -2.8366 1.4193 32 1 2.1137 -2.5523 -0.1627 33 1 4.2894 -3.2265 -0.0995 34 1 5.4449 -2.8093 1.1886 35 1 3.3804 -4.9016 1.4086 36 1 5.1543 -5.5054 -0.1385 37 1 6.3104 -5.0885 1.1491 38 1 4.6203 -6.1112 3.4956 39 1 5.2367 -7.7813 3.4837 40 1 6.3584 -6.4171 3.2641 41 1 3.5790 -7.4205 0.1700 42 1 3.6131 -8.3670 1.6773 43 1 2.9972 -6.6972 1.6887 44 1 6.0179 -7.8498 -0.1555 45 1 7.1748 -7.4326 1.1313 46 1 7.2677 -12.1295 1.3388 47 1 4.0092 -0.6694 0.2256 48 1 3.9554 -0.1637 1.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594522993.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:49 Heat of formation + Delta-G solvation = -11.429888 kcal Electronic energy + Delta-G solvation = -20947.829156 eV Core-core repulsion = 18036.870118 eV Total energy + Delta-G solvation = -2910.959039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58102 -39.10062 -36.73562 -35.11682 -33.94925 -29.89877 -28.73663 -28.49464 -27.90498 -26.41077 -26.00457 -24.80305 -23.43068 -21.69240 -20.29015 -19.39715 -18.85936 -17.13334 -16.50317 -16.41492 -16.34851 -15.88590 -15.60081 -15.25846 -15.15609 -14.61878 -14.53870 -14.02242 -13.85290 -13.67324 -13.39819 -13.26666 -13.13650 -12.88949 -12.78218 -12.70012 -12.51639 -12.40571 -12.23469 -12.13618 -11.97989 -11.71924 -11.63800 -11.34992 -11.33766 -11.00606 -10.90389 -10.72312 -10.69313 -9.29821 -9.22455 -8.21099 -6.21220 1.36261 1.37670 1.48905 2.40102 3.03715 3.13859 3.29547 3.63957 3.83397 3.89494 4.04798 4.13107 4.21622 4.26826 4.34570 4.48589 4.52263 4.57548 4.68113 4.69061 4.76830 4.79529 4.87707 4.90729 4.93163 4.94062 5.00613 5.02860 5.04510 5.05802 5.10100 5.13569 5.20211 5.35764 5.38012 5.46290 5.53869 5.55811 5.64011 5.77630 5.83433 6.10955 6.17420 6.21935 6.43297 6.59647 6.86079 7.41188 8.95152 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.040594 B = 0.002981 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.599518 B = 9389.159285 C = 9534.123385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.024 3.976 4 C 0.054 3.946 5 H 0.066 0.934 6 C -0.120 4.120 7 C -0.100 4.100 8 H 0.096 0.904 9 C 0.074 3.926 10 N -0.685 5.685 11 C 0.079 3.921 12 C -0.049 4.049 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.004 4.004 16 C -0.502 4.502 17 H 0.045 0.955 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.250 1.250 24 C -0.116 4.116 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.342 0.658 36 H 0.023 0.977 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.085 0.915 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 26.642 -3.024 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.124 4.124 4 C -0.054 4.054 5 H 0.083 0.917 6 C -0.158 4.158 7 C -0.120 4.120 8 H 0.114 0.886 9 C -0.055 4.055 10 N -0.317 5.317 11 C -0.050 4.050 12 C -0.049 4.049 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.042 4.042 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.196 4.196 19 N -0.597 5.597 20 Si 0.766 3.234 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.174 1.174 24 C -0.154 4.154 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.029 0.971 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.468 26.410 -2.920 28.207 hybrid contribution 0.065 -0.463 -0.545 0.719 sum -9.403 25.946 -3.466 27.814 Atomic orbital electron populations 1.22376 0.86932 1.02363 1.00733 1.62222 1.08503 1.14488 1.42340 1.22376 1.01178 0.88226 1.00645 1.23109 0.95885 0.94450 0.91941 0.91654 1.23084 0.97145 0.94918 1.00683 1.22395 0.94665 0.94562 1.00336 0.88591 1.21896 0.99407 0.88469 0.95773 1.60511 1.08332 1.02199 1.60637 1.21858 0.96226 0.91686 0.95227 1.20350 0.95542 0.92990 0.96029 1.21509 1.00464 0.99732 0.94866 1.21687 0.95816 1.00375 1.00213 1.19611 0.95092 0.93956 0.95543 1.21431 1.16542 0.93794 1.22290 0.93711 1.25929 1.00012 0.94872 0.98760 1.70065 1.41263 1.02342 1.46024 0.85791 0.79736 0.77914 0.79984 1.19601 1.21429 1.17363 1.22984 0.94653 0.95781 1.01994 0.95498 0.90744 0.91566 0.91056 0.90869 0.95578 0.91538 0.90301 0.95527 0.91381 0.83832 0.95858 0.91745 0.91449 0.95369 0.94389 0.93851 0.94509 0.91516 0.96972 0.97058 0.92904 0.89628 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.56 127.69 1.22 1.54 16 2 N -0.55 -8.62 4.98 -920.17 -4.58 -13.21 16 3 C 0.02 0.30 9.33 127.69 1.19 1.49 16 4 C 0.05 0.85 3.21 45.44 0.15 0.99 16 5 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 6 C -0.12 -2.04 7.35 31.21 0.23 -1.81 16 7 C -0.10 -1.75 3.91 -10.16 -0.04 -1.79 16 8 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 9 C 0.07 1.56 5.53 86.30 0.48 2.04 16 10 N -0.68 -17.48 5.71 -513.91 -2.94 -20.41 16 11 C 0.08 2.46 4.65 86.30 0.40 2.87 16 12 C -0.05 -1.85 0.60 -52.18 -0.03 -1.88 16 13 C -0.11 -4.15 8.07 71.98 0.58 -3.57 16 14 C -0.12 -4.50 7.89 71.98 0.57 -3.93 16 15 C 0.00 -0.20 3.11 29.85 0.09 -0.10 16 16 C -0.50 -28.55 8.20 25.60 0.21 -28.34 16 17 H 0.04 2.78 5.92 -2.91 -0.02 2.77 16 18 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 19 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 20 Si 0.94 45.21 27.47 68.60 1.88 47.10 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 24 C -0.12 -1.75 6.16 31.14 0.19 -1.56 16 25 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 27 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 28 H 0.07 0.87 7.05 -2.39 -0.02 0.86 16 29 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 30 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.50 7.91 -2.39 -0.02 1.49 16 33 H 0.03 0.58 7.85 -2.38 -0.02 0.56 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.34 8.40 6.77 -89.69 -0.61 7.79 16 36 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.25 7.60 -2.38 -0.02 2.23 16 39 H 0.03 1.22 6.62 -2.39 -0.02 1.21 16 40 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 43 H 0.07 1.99 6.57 -2.38 -0.02 1.97 16 44 H 0.01 0.56 7.20 -2.38 -0.02 0.55 16 45 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 46 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 47 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 48 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -63.78 363.64 0.59 -63.19 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.22 Total: 17.21 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 5.70 Total: -33.60 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -7.22 Total: -93.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -63.78 0.59 -63.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594522993.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.761 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds