Wall clock time and date at job start Mon Mar 30 2020 08:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47324 * 2 1 4 4 C 1.53005 * 109.47029 * 120.00179 * 2 1 3 5 5 N 1.46893 * 109.47198 * 58.47908 * 4 2 1 6 6 C 1.46903 * 111.00115 * 74.44748 * 5 4 2 7 7 C 1.50699 * 109.46547 * 284.83078 * 6 5 4 8 8 H 1.07995 * 120.00644 * 354.48488 * 7 6 5 9 9 C 1.37881 * 119.99539 * 174.48120 * 7 6 5 10 10 N 1.31520 * 120.00028 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00200 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47340 * 89.99370 * 11 9 7 13 13 H 1.48500 * 109.47175 * 210.00068 * 11 9 7 14 14 H 1.48510 * 109.46935 * 329.99544 * 11 9 7 15 15 C 1.46905 * 110.99927 * 198.39618 * 5 4 2 16 16 C 1.53004 * 109.46798 * 66.04896 * 15 5 4 17 17 N 1.46902 * 109.46898 * 178.16444 * 16 15 5 18 18 C 1.48570 * 110.99763 * 176.00231 * 17 16 15 19 19 C 1.54375 * 104.59049 * 200.95808 * 18 17 16 20 20 C 1.54267 * 105.06357 * 23.85161 * 19 18 17 21 21 H 1.09001 * 110.32460 * 241.10273 * 20 19 18 22 22 C 1.52998 * 110.32087 * 118.99968 * 20 19 18 23 23 C 1.48555 * 111.00389 * 60.58320 * 17 16 15 24 24 H 1.08999 * 109.47303 * 299.99933 * 1 2 3 25 25 H 1.08997 * 109.47085 * 60.00556 * 1 2 3 26 26 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47122 * 239.99897 * 2 1 3 28 28 H 1.09000 * 109.47615 * 179.97438 * 3 2 1 29 29 H 1.09009 * 109.47190 * 300.00064 * 3 2 1 30 30 H 1.09003 * 109.47578 * 59.99854 * 3 2 1 31 31 H 1.09003 * 109.46995 * 298.47604 * 4 2 1 32 32 H 1.08997 * 109.47046 * 178.48310 * 4 2 1 33 33 H 1.08994 * 109.47044 * 44.82942 * 6 5 4 34 34 H 1.08997 * 109.46816 * 164.83489 * 6 5 4 35 35 H 0.96995 * 120.00228 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47167 * 306.05210 * 15 5 4 37 37 H 1.08999 * 109.47278 * 186.04382 * 15 5 4 38 38 H 1.08995 * 109.47622 * 58.16018 * 16 15 5 39 39 H 1.09008 * 109.46767 * 298.15883 * 16 15 5 40 40 H 1.08996 * 110.40894 * 82.17562 * 18 17 16 41 41 H 1.09004 * 110.40914 * 319.73459 * 18 17 16 42 42 H 1.08995 * 110.32393 * 264.95141 * 19 18 17 43 43 H 1.09000 * 110.41160 * 142.79453 * 19 18 17 44 44 H 1.08995 * 109.47634 * 62.82713 * 22 20 19 45 45 H 1.09003 * 109.46691 * 182.83274 * 22 20 19 46 46 H 1.09003 * 109.47078 * 302.82305 * 22 20 19 47 47 H 1.09000 * 110.41462 * 40.25879 * 23 17 16 48 48 H 1.08999 * 110.41123 * 277.82260 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5206 -2.0952 1.2678 6 6 2.2203 -2.9359 0.2871 7 6 1.7345 -2.6003 -1.0995 8 1 0.9197 -1.9041 -1.2325 9 6 2.3305 -3.1821 -2.1983 10 7 1.9063 -2.8897 -3.4084 11 14 3.7394 -4.3869 -1.9683 12 1 3.1979 -5.7639 -1.8432 13 1 4.6473 -4.3165 -3.1413 14 1 4.4932 -4.0377 -0.7372 15 6 1.6093 -2.6735 2.6153 16 6 0.6710 -1.9169 3.5577 17 7 0.7269 -2.5230 4.8947 18 6 -0.0993 -1.7555 5.8620 19 6 0.4619 -2.1439 7.2467 20 6 1.9098 -2.6035 6.9780 21 1 2.0380 -3.6442 7.2756 22 6 2.8988 -1.7110 7.7303 23 6 2.1015 -2.4541 5.4536 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6991 -0.1919 2.1391 32 1 3.1296 -0.7449 1.2358 33 1 3.2928 -2.7522 0.3507 34 1 2.0181 -3.9858 0.4987 35 1 2.3257 -3.2987 -4.1814 36 1 2.6335 -2.5913 2.9792 37 1 1.3194 -3.7236 2.5798 38 1 -0.3486 -1.9714 3.1763 39 1 0.9810 -0.8736 3.6185 40 1 -1.1468 -2.0455 5.7813 41 1 0.0138 -0.6846 5.6928 42 1 -0.1205 -2.9590 7.6762 43 1 0.4559 -1.2825 7.9146 44 1 2.7327 -1.8081 8.8032 45 1 3.9177 -2.0158 7.4913 46 1 2.7509 -0.6730 7.4323 47 1 2.5590 -1.4926 5.2204 48 1 2.7111 -3.2701 5.0653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:36 Heat of formation + Delta-G solvation = -1.963345 kcal Electronic energy + Delta-G solvation = -21844.206184 eV Core-core repulsion = 18933.657645 eV Total energy + Delta-G solvation = -2910.548539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.31421 -37.58143 -34.28293 -33.15467 -32.33662 -30.13376 -28.45063 -26.99818 -26.38086 -25.96818 -24.36357 -22.05911 -20.73403 -20.55203 -19.86894 -18.99987 -16.70599 -16.29419 -15.70844 -15.03390 -14.67127 -14.50299 -14.15580 -13.72147 -13.64029 -13.23963 -12.88518 -12.77946 -12.61586 -12.57157 -12.38714 -12.19752 -11.74111 -11.61502 -11.42418 -11.19048 -11.04316 -10.97765 -10.93302 -10.73647 -10.60302 -10.45160 -10.27834 -10.10807 -9.91613 -9.85679 -9.53680 -8.96678 -8.47779 -8.39813 -7.30114 -6.00973 -3.95692 3.30294 3.37840 3.39986 3.95832 4.45307 4.48608 4.54611 4.73726 4.98798 5.11601 5.24221 5.28326 5.33550 5.37347 5.40514 5.54183 5.59088 5.62642 5.68769 5.73177 5.79490 5.85681 5.88212 5.93694 6.02546 6.04027 6.12300 6.14021 6.20809 6.32911 6.35303 6.39557 6.53495 6.61338 6.75159 6.81969 6.88336 6.93068 7.03882 7.11611 7.33516 7.54479 7.70014 7.96647 8.12765 8.71359 9.11158 9.61022 11.10607 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.004780 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.292790 B = 5855.989700 C = 6604.423539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.076 3.924 5 N -0.524 5.524 6 C 0.160 3.840 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.068 3.932 10 N -0.900 5.900 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.059 3.941 16 C 0.051 3.949 17 N -0.511 5.511 18 C 0.033 3.967 19 C -0.120 4.120 20 C -0.098 4.098 21 H 0.078 0.922 22 C -0.144 4.144 23 C 0.035 3.965 24 H 0.028 0.972 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.019 0.981 33 H -0.009 1.009 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.018 0.982 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.043 0.957 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 4.259 19.097 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.129 4.129 3 C -0.200 4.200 4 C -0.052 4.052 5 N -0.248 5.248 6 C 0.034 3.966 7 C -0.546 4.546 8 H 0.118 0.882 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.695 3.305 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.070 4.070 16 C -0.077 4.077 17 N -0.235 5.235 18 C -0.095 4.095 19 C -0.158 4.158 20 C -0.118 4.118 21 H 0.096 0.904 22 C -0.202 4.202 23 C -0.093 4.093 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.008 0.992 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.821 3.677 18.688 19.064 hybrid contribution 1.998 0.140 0.256 2.020 sum 1.177 3.817 18.944 19.360 Atomic orbital electron populations 1.21597 0.95556 1.02573 0.98453 1.21561 0.96287 0.93790 1.01252 1.21832 1.00150 0.97706 1.00347 1.22010 0.95861 0.89814 0.97544 1.61870 1.57452 1.02051 1.03423 1.20274 0.91617 0.92393 0.92349 1.21342 1.18974 1.26810 0.87494 0.88158 1.24903 0.96769 0.96363 0.95282 1.69884 1.42126 1.44131 0.97749 0.86979 0.83326 0.82399 0.77757 1.20283 1.21372 1.19410 1.22013 0.95979 0.99316 0.89685 1.22330 1.01778 0.95637 0.87983 1.65362 1.06802 1.49454 1.01876 1.23080 0.98668 0.96037 0.91720 1.22381 0.95726 1.01052 0.96642 1.21893 0.94823 1.00184 0.94852 0.90388 1.21860 0.99023 0.99415 0.99855 1.23197 0.91663 1.00764 0.93655 0.95312 0.94509 0.90666 0.85990 0.93703 0.93145 0.94303 0.93229 0.96265 0.99168 0.96151 0.92774 0.96364 0.90574 0.89723 0.94836 0.90180 0.94067 0.91170 0.91467 0.92570 0.92561 0.92785 0.93911 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.34 37.16 0.31 -2.04 16 2 C -0.11 -2.17 2.39 -90.62 -0.22 -2.38 16 3 C -0.14 -2.35 9.19 37.15 0.34 -2.01 16 4 C 0.08 1.44 4.31 -3.82 -0.02 1.42 16 5 N -0.52 -10.67 3.63 -236.07 -0.86 -11.53 16 6 C 0.16 3.82 3.86 -4.97 -0.02 3.80 16 7 C -0.51 -13.78 7.51 -34.44 -0.26 -14.04 16 8 H 0.10 2.86 4.73 -52.49 -0.25 2.61 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 11 Si 0.87 21.36 27.58 -169.99 -4.69 16.67 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 14 H -0.27 -6.46 6.39 56.52 0.36 -6.10 16 15 C 0.06 1.03 4.77 -3.82 -0.02 1.01 16 16 C 0.05 0.76 4.83 -3.82 -0.02 0.74 16 17 N -0.51 -6.80 5.44 -229.97 -1.25 -8.05 16 18 C 0.03 0.37 6.49 -2.18 -0.01 0.35 16 19 C -0.12 -1.11 6.65 -25.35 -0.17 -1.28 16 20 C -0.10 -0.95 3.65 -89.24 -0.33 -1.28 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.14 -1.18 8.91 37.16 0.33 -0.85 16 23 C 0.04 0.42 4.92 -2.19 -0.01 0.41 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.60 6.62 -51.93 -0.34 1.25 16 27 H 0.12 2.91 5.00 -51.92 -0.26 2.65 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.85 5.93 -51.93 -0.31 0.54 16 32 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 33 H -0.01 -0.23 6.43 -51.93 -0.33 -0.56 16 34 H 0.02 0.49 7.44 -51.93 -0.39 0.11 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.02 0.31 7.03 -51.93 -0.37 -0.05 16 37 H 0.08 1.38 7.83 -51.93 -0.41 0.98 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.03 0.50 6.16 -51.92 -0.32 0.18 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.45 7.91 -51.93 -0.41 0.04 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.04 0.53 7.69 -51.93 -0.40 0.13 16 48 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -28.36 354.48 -10.10 -38.46 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.23 Total: -0.44 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.18 Total: -14.31 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.34 Total: -45.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.69 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.36 -10.10 -38.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.493 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds