Wall clock time and date at job start Mon Mar 30 2020 08:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47324 * 2 1 4 4 C 1.53005 * 109.47029 * 120.00179 * 2 1 3 5 5 N 1.46893 * 109.47198 * 58.47908 * 4 2 1 6 6 C 1.46903 * 111.00115 * 74.44748 * 5 4 2 7 7 C 1.50699 * 109.46547 * 284.83078 * 6 5 4 8 8 H 1.07995 * 120.00644 * 354.48488 * 7 6 5 9 9 C 1.37881 * 119.99539 * 174.48120 * 7 6 5 10 10 N 1.31520 * 120.00028 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00200 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47340 * 89.99370 * 11 9 7 13 13 H 1.48500 * 109.47175 * 210.00068 * 11 9 7 14 14 H 1.48510 * 109.46935 * 329.99544 * 11 9 7 15 15 C 1.46905 * 110.99927 * 198.39618 * 5 4 2 16 16 C 1.53004 * 109.46798 * 66.04896 * 15 5 4 17 17 N 1.46902 * 109.46898 * 178.16444 * 16 15 5 18 18 C 1.48570 * 110.99763 * 176.00231 * 17 16 15 19 19 C 1.54375 * 104.59049 * 200.95808 * 18 17 16 20 20 C 1.54267 * 105.06357 * 23.85161 * 19 18 17 21 21 H 1.09001 * 110.32460 * 241.10273 * 20 19 18 22 22 C 1.52998 * 110.32087 * 118.99968 * 20 19 18 23 23 C 1.48555 * 111.00389 * 60.58320 * 17 16 15 24 24 H 1.08999 * 109.47303 * 299.99933 * 1 2 3 25 25 H 1.08997 * 109.47085 * 60.00556 * 1 2 3 26 26 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47122 * 239.99897 * 2 1 3 28 28 H 1.09000 * 109.47615 * 179.97438 * 3 2 1 29 29 H 1.09009 * 109.47190 * 300.00064 * 3 2 1 30 30 H 1.09003 * 109.47578 * 59.99854 * 3 2 1 31 31 H 1.09003 * 109.46995 * 298.47604 * 4 2 1 32 32 H 1.08997 * 109.47046 * 178.48310 * 4 2 1 33 33 H 1.08994 * 109.47044 * 44.82942 * 6 5 4 34 34 H 1.08997 * 109.46816 * 164.83489 * 6 5 4 35 35 H 0.96995 * 120.00228 * 179.97438 * 10 9 7 36 36 H 1.09003 * 109.47167 * 306.05210 * 15 5 4 37 37 H 1.08999 * 109.47278 * 186.04382 * 15 5 4 38 38 H 1.08995 * 109.47622 * 58.16018 * 16 15 5 39 39 H 1.09008 * 109.46767 * 298.15883 * 16 15 5 40 40 H 1.08996 * 110.40894 * 82.17562 * 18 17 16 41 41 H 1.09004 * 110.40914 * 319.73459 * 18 17 16 42 42 H 1.08995 * 110.32393 * 264.95141 * 19 18 17 43 43 H 1.09000 * 110.41160 * 142.79453 * 19 18 17 44 44 H 1.08995 * 109.47634 * 62.82713 * 22 20 19 45 45 H 1.09003 * 109.46691 * 182.83274 * 22 20 19 46 46 H 1.09003 * 109.47078 * 302.82305 * 22 20 19 47 47 H 1.09000 * 110.41462 * 40.25879 * 23 17 16 48 48 H 1.08999 * 110.41123 * 277.82260 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.5206 -2.0952 1.2678 6 6 2.2203 -2.9359 0.2871 7 6 1.7345 -2.6003 -1.0995 8 1 0.9197 -1.9041 -1.2325 9 6 2.3305 -3.1821 -2.1983 10 7 1.9063 -2.8897 -3.4084 11 14 3.7394 -4.3869 -1.9683 12 1 3.1979 -5.7639 -1.8432 13 1 4.6473 -4.3165 -3.1413 14 1 4.4932 -4.0377 -0.7372 15 6 1.6093 -2.6735 2.6153 16 6 0.6710 -1.9169 3.5577 17 7 0.7269 -2.5230 4.8947 18 6 -0.0993 -1.7555 5.8620 19 6 0.4619 -2.1439 7.2467 20 6 1.9098 -2.6035 6.9780 21 1 2.0380 -3.6442 7.2756 22 6 2.8988 -1.7110 7.7303 23 6 2.1015 -2.4541 5.4536 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6991 -0.1919 2.1391 32 1 3.1296 -0.7449 1.2358 33 1 3.2928 -2.7522 0.3507 34 1 2.0181 -3.9858 0.4987 35 1 2.3257 -3.2987 -4.1814 36 1 2.6335 -2.5913 2.9792 37 1 1.3194 -3.7236 2.5798 38 1 -0.3486 -1.9714 3.1763 39 1 0.9810 -0.8736 3.6185 40 1 -1.1468 -2.0455 5.7813 41 1 0.0138 -0.6846 5.6928 42 1 -0.1205 -2.9590 7.6762 43 1 0.4559 -1.2825 7.9146 44 1 2.7327 -1.8081 8.8032 45 1 3.9177 -2.0158 7.4913 46 1 2.7509 -0.6730 7.4323 47 1 2.5590 -1.4926 5.2204 48 1 2.7111 -3.2701 5.0653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:35 Heat of formation + Delta-G solvation = -19.361182 kcal Electronic energy + Delta-G solvation = -21844.960611 eV Core-core repulsion = 18933.657645 eV Total energy + Delta-G solvation = -2911.302965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.33859 -39.07750 -35.58086 -34.83325 -33.96469 -31.24652 -29.93689 -28.37165 -27.82990 -27.06171 -25.81159 -23.40627 -22.25378 -21.70401 -20.86327 -20.55378 -18.71555 -17.29763 -16.91485 -16.58349 -16.14918 -15.91151 -15.46647 -15.22237 -14.91963 -14.46908 -14.39176 -14.08898 -13.93187 -13.78246 -13.58763 -13.21708 -13.19976 -12.99171 -12.82344 -12.60920 -12.55874 -12.29799 -12.18201 -11.88408 -11.75951 -11.73669 -11.61087 -11.57577 -11.41068 -11.34800 -11.32263 -10.93379 -10.56064 -9.43981 -8.96027 -8.18367 -6.16144 1.33985 1.35783 1.43965 2.38339 2.84149 3.12629 3.43343 3.67788 3.76409 3.96411 4.09436 4.14770 4.24473 4.32639 4.33432 4.45564 4.53117 4.57773 4.62508 4.67172 4.70185 4.74755 4.77191 4.85613 4.89290 4.91635 4.96324 5.00973 5.02147 5.06824 5.10402 5.12594 5.18300 5.24730 5.27854 5.29293 5.43214 5.45242 5.62669 5.73339 5.89499 5.92774 6.04488 6.12999 6.47017 6.71992 6.92647 7.43407 8.95954 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.004780 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.292790 B = 5855.989700 C = 6604.423539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.080 3.920 5 N -0.533 5.533 6 C 0.169 3.831 7 C -0.502 4.502 8 H 0.077 0.923 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.928 3.072 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.258 1.258 15 C 0.063 3.937 16 C 0.065 3.935 17 N -0.524 5.524 18 C 0.030 3.970 19 C -0.115 4.115 20 C -0.095 4.095 21 H 0.079 0.921 22 C -0.140 4.140 23 C 0.033 3.967 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.012 0.988 33 H -0.016 1.016 34 H 0.018 0.982 35 H 0.263 0.737 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.040 0.960 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 4.860 21.939 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.130 4.130 3 C -0.193 4.193 4 C -0.048 4.048 5 N -0.257 5.257 6 C 0.042 3.958 7 C -0.540 4.540 8 H 0.095 0.905 9 C -0.185 4.185 10 N -0.587 5.587 11 Si 0.754 3.246 12 H -0.196 1.196 13 H -0.212 1.212 14 H -0.183 1.183 15 C -0.065 4.065 16 C -0.063 4.063 17 N -0.249 5.249 18 C -0.097 4.097 19 C -0.153 4.153 20 C -0.115 4.115 21 H 0.097 0.903 22 C -0.198 4.198 23 C -0.095 4.095 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.002 0.998 34 H 0.036 0.964 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.332 4.280 21.563 21.987 hybrid contribution 1.771 -0.004 -0.589 1.866 sum 1.439 4.277 20.974 21.454 Atomic orbital electron populations 1.21466 0.95153 1.00968 0.99594 1.21427 0.96625 0.95530 0.99416 1.21744 1.00345 0.95502 1.01707 1.22017 0.95371 0.89094 0.98272 1.61775 1.57061 1.02448 1.04403 1.20039 0.91271 0.92803 0.91706 1.21589 1.17813 1.25360 0.89232 0.90502 1.25649 0.99487 0.98402 0.95000 1.70019 1.44027 1.46011 0.98627 0.86002 0.80408 0.80260 0.77976 1.19638 1.21187 1.18269 1.21999 0.96990 0.98994 0.88523 1.22080 1.00318 0.95367 0.88543 1.65337 1.08014 1.49983 1.01524 1.23166 0.98544 0.95936 0.92087 1.22381 0.95164 1.01946 0.95762 1.21888 0.95636 1.00733 0.93193 0.90288 1.21830 0.98532 0.98896 1.00499 1.23235 0.90772 1.00177 0.95348 0.92616 0.94770 0.93615 0.90861 0.93379 0.92992 0.91707 0.90536 0.96972 0.99799 0.96370 0.92837 0.95852 0.91631 0.90681 0.94440 0.89926 0.93780 0.90592 0.89792 0.91129 0.92571 0.92856 0.94181 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.34 71.98 0.60 -3.70 16 2 C -0.11 -4.33 2.39 -10.80 -0.03 -4.36 16 3 C -0.14 -4.22 9.19 71.98 0.66 -3.56 16 4 C 0.08 2.96 4.31 86.31 0.37 3.33 16 5 N -0.53 -21.57 3.63 -900.78 -3.27 -24.84 16 6 C 0.17 8.11 3.86 85.56 0.33 8.44 16 7 C -0.50 -27.96 7.51 25.60 0.19 -27.76 16 8 H 0.08 4.59 4.73 -2.91 -0.01 4.57 16 9 C 0.01 0.66 5.47 84.65 0.46 1.13 16 10 N -0.95 -58.34 13.96 21.45 0.30 -58.05 16 11 Si 0.93 44.53 27.58 68.60 1.89 46.43 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 14 H -0.26 -11.82 6.39 99.48 0.64 -11.19 16 15 C 0.06 2.15 4.77 86.30 0.41 2.56 16 16 C 0.07 1.86 4.83 86.30 0.42 2.28 16 17 N -0.52 -13.05 5.44 -881.49 -4.80 -17.85 16 18 C 0.03 0.60 6.49 86.45 0.56 1.16 16 19 C -0.11 -1.78 6.65 31.49 0.21 -1.57 16 20 C -0.10 -1.61 3.65 -9.90 -0.04 -1.65 16 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 22 C -0.14 -1.90 8.91 71.98 0.64 -1.26 16 23 C 0.03 0.72 4.92 86.45 0.43 1.15 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.97 6.62 -2.39 -0.02 1.95 16 27 H 0.07 3.62 5.00 -2.38 -0.01 3.61 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.42 5.93 -2.39 -0.01 2.40 16 32 H 0.01 0.46 7.77 -2.39 -0.02 0.45 16 33 H -0.02 -0.77 6.43 -2.39 -0.02 -0.78 16 34 H 0.02 0.88 7.44 -2.39 -0.02 0.86 16 35 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.02 0.77 7.03 -2.39 -0.02 0.76 16 37 H 0.07 2.35 7.83 -2.39 -0.02 2.34 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.03 6.16 -2.38 -0.01 1.02 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.04 0.85 7.91 -2.39 -0.02 0.83 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.05 7.71 -2.39 -0.02 1.03 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.04 0.91 7.69 -2.39 -0.02 0.89 16 48 H 0.07 1.66 7.71 -2.39 -0.02 1.64 16 Total: -1.00 -62.09 354.48 0.16 -61.93 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.81 Total: 16.21 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 5.22 Total: -23.83 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -7.77 Total: -100.74 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.89 Total: 46.43 kcal Total: -62.09 0.16 -61.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.571 kcal (2) G-P(sol) polarization free energy of solvation -62.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds