Wall clock time and date at job start Mon Mar 30 2020 08:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 C 1.53000 * 109.47221 * 120.00171 * 2 1 3 5 5 N 1.46893 * 109.47156 * 58.68033 * 4 2 1 6 6 C 1.46900 * 111.00468 * 74.41387 * 5 4 2 7 7 C 1.50701 * 109.47108 * 284.75950 * 6 5 4 8 8 H 1.07998 * 120.00041 * 354.44380 * 7 6 5 9 9 C 1.37871 * 120.00012 * 174.43857 * 7 6 5 10 10 N 1.31521 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00075 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47000 * 60.00309 * 11 9 7 13 13 H 1.48504 * 109.47330 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47171 * 300.00039 * 11 9 7 15 15 C 1.46899 * 110.99808 * 198.36891 * 5 4 2 16 16 C 1.53001 * 109.47201 * 66.04690 * 15 5 4 17 17 N 1.46905 * 109.47282 * 183.30708 * 16 15 5 18 18 C 1.47892 * 111.00034 * 183.85927 * 17 16 15 19 19 C 1.54000 * 107.05666 * 145.84346 * 18 17 16 20 20 C 1.54587 * 105.13798 * 358.77828 * 19 18 17 21 21 H 1.09000 * 110.72774 * 96.57934 * 20 19 18 22 22 C 1.53001 * 110.72101 * 219.68247 * 20 19 18 23 23 C 1.48733 * 111.04152 * 301.44081 * 17 16 15 24 24 H 1.09000 * 109.47315 * 299.99674 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.00065 * 1 2 3 26 26 H 1.09004 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47315 * 240.00326 * 2 1 3 28 28 H 1.09004 * 109.47528 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47198 * 300.00479 * 3 2 1 30 30 H 1.09001 * 109.47218 * 60.00406 * 3 2 1 31 31 H 1.08999 * 109.46954 * 298.67281 * 4 2 1 32 32 H 1.09005 * 109.47043 * 178.67915 * 4 2 1 33 33 H 1.09006 * 109.46820 * 44.75667 * 6 5 4 34 34 H 1.09003 * 109.47110 * 164.75601 * 6 5 4 35 35 H 0.96996 * 119.99878 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47504 * 306.04511 * 15 5 4 37 37 H 1.09007 * 109.47401 * 186.04322 * 15 5 4 38 38 H 1.08992 * 109.47166 * 63.30814 * 16 15 5 39 39 H 1.09001 * 109.47045 * 303.30315 * 16 15 5 40 40 H 1.09002 * 109.91844 * 26.49777 * 18 17 16 41 41 H 1.08998 * 109.92260 * 265.19917 * 18 17 16 42 42 H 1.08995 * 110.30801 * 239.85731 * 19 18 17 43 43 H 1.08997 * 110.30704 * 117.69329 * 19 18 17 44 44 H 1.09002 * 109.47539 * 56.15243 * 22 20 19 45 45 H 1.09000 * 109.47274 * 296.14821 * 22 20 19 46 46 H 1.09007 * 109.47493 * 176.14692 * 22 20 19 47 47 H 1.08998 * 110.84192 * 81.95894 * 23 17 16 48 48 H 1.08998 * 110.58233 * 318.76562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5245 -2.0967 1.2652 6 6 2.2276 -2.9340 0.2842 7 6 1.7412 -2.5993 -1.1023 8 1 0.9235 -1.9064 -1.2351 9 6 2.3402 -3.1774 -2.2013 10 7 3.3358 -4.0215 -2.0396 11 14 1.7368 -2.7631 -3.9199 12 1 1.8830 -1.3045 -4.1575 13 1 2.5408 -3.5100 -4.9204 14 1 0.3075 -3.1447 -4.0481 15 6 1.6133 -2.6765 2.6120 16 6 0.6718 -1.9239 3.5544 17 7 0.8189 -2.4514 4.9176 18 6 -0.1427 -1.8104 5.8405 19 6 -0.5562 -2.8754 6.8732 20 6 0.2031 -4.1564 6.4582 21 1 1.1224 -4.2636 7.0341 22 6 -0.6854 -5.3907 6.6257 23 6 0.5193 -3.9076 4.9620 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6962 -0.1939 2.1390 32 1 3.1298 -0.7418 1.2374 33 1 3.2995 -2.7464 0.3483 34 1 2.0294 -3.9849 0.4950 35 1 3.7570 -4.4285 -2.8128 36 1 2.6368 -2.5920 2.9772 37 1 1.3264 -3.7275 2.5749 38 1 -0.3576 -2.0573 3.2224 39 1 0.9216 -0.8629 3.5466 40 1 -1.0181 -1.4703 5.2872 41 1 0.3313 -0.9685 6.3449 42 1 -1.6324 -3.0437 6.8329 43 1 -0.2580 -2.5667 7.8751 44 1 -1.6032 -5.2582 6.0528 45 1 -0.9306 -5.5215 7.6797 46 1 -0.1553 -6.2718 6.2639 47 1 1.3852 -4.4913 4.6495 48 1 -0.3465 -4.1397 4.3420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:39 Heat of formation + Delta-G solvation = -6.589612 kcal Electronic energy + Delta-G solvation = -21755.843829 eV Core-core repulsion = 18845.094680 eV Total energy + Delta-G solvation = -2910.749149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.18746 -37.46359 -34.22483 -33.13936 -32.32203 -30.04736 -28.09334 -26.67580 -26.37927 -25.95680 -24.33860 -22.07299 -20.87004 -20.42671 -19.90221 -18.93088 -16.42640 -16.13189 -15.54159 -14.98181 -14.64984 -14.48271 -13.99091 -13.84701 -13.43915 -13.13354 -12.97895 -12.89442 -12.47568 -12.28095 -12.17643 -12.07756 -11.73609 -11.56823 -11.30604 -11.07921 -11.02662 -10.94935 -10.75158 -10.69696 -10.58894 -10.46402 -10.35382 -10.14622 -10.03472 -9.81137 -9.26981 -9.00245 -8.34585 -8.28611 -7.17045 -5.98377 -3.96685 3.34765 3.39245 3.41791 4.03063 4.45500 4.55409 4.62237 4.81502 5.12466 5.19174 5.32497 5.35598 5.41008 5.44982 5.56586 5.60631 5.67904 5.70969 5.73040 5.78705 5.81062 5.93416 5.98335 6.02233 6.05195 6.11765 6.16867 6.23998 6.31352 6.32750 6.44187 6.46434 6.49170 6.61399 6.76373 6.88302 7.00509 7.14587 7.24426 7.32677 7.41088 7.50253 7.90779 8.17946 8.26824 8.61147 9.09862 9.64481 11.12098 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.004560 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.014080 B = 6138.469290 C = 7015.405096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.077 3.923 5 N -0.535 5.535 6 C 0.194 3.806 7 C -0.504 4.504 8 H 0.078 0.922 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.061 3.939 16 C 0.052 3.948 17 N -0.521 5.521 18 C 0.037 3.963 19 C -0.126 4.126 20 C -0.098 4.098 21 H 0.080 0.920 22 C -0.143 4.143 23 C 0.039 3.961 24 H 0.031 0.969 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.021 0.979 33 H -0.004 1.004 34 H 0.021 0.979 35 H 0.260 0.740 36 H 0.028 0.972 37 H 0.065 0.935 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.587 3.499 14.771 16.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.128 4.128 3 C -0.201 4.201 4 C -0.052 4.052 5 N -0.260 5.260 6 C 0.068 3.932 7 C -0.542 4.542 8 H 0.096 0.904 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.068 4.068 16 C -0.076 4.076 17 N -0.245 5.245 18 C -0.091 4.091 19 C -0.164 4.164 20 C -0.117 4.117 21 H 0.099 0.901 22 C -0.201 4.201 23 C -0.089 4.089 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.014 0.986 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.101 0.899 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.416 3.509 14.674 16.395 hybrid contribution -0.156 0.019 -1.039 1.050 sum -6.572 3.528 13.635 15.542 Atomic orbital electron populations 1.21639 0.95847 1.02447 0.98557 1.21534 0.95928 0.93849 1.01484 1.21842 1.00406 0.97602 1.00300 1.21961 0.96173 0.90078 0.96956 1.62053 1.57913 1.02256 1.03760 1.19762 0.91719 0.91773 0.89897 1.21394 1.17206 1.25768 0.89876 0.90386 1.25004 0.95191 0.95387 0.99156 1.69958 1.23695 1.29899 1.30363 0.86669 0.78812 0.78489 0.84144 1.20182 1.21489 1.20211 1.21952 0.96973 0.98171 0.89722 1.22340 0.98886 0.99596 0.86759 1.64746 1.48268 1.03445 1.08044 1.22820 0.94405 0.97539 0.94381 1.22476 0.99902 0.95003 0.99057 1.22076 0.98846 0.94319 0.96433 0.90131 1.21777 0.99472 0.97415 1.01413 1.23339 1.00387 0.89755 0.95411 0.94979 0.94769 0.90755 0.86693 0.93476 0.93416 0.94070 0.93229 0.96041 0.98581 0.96068 0.93015 0.95384 0.91644 0.94163 0.90814 0.93879 0.90711 0.91601 0.91329 0.92681 0.92677 0.92364 0.89944 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.34 37.15 0.31 -1.99 16 2 C -0.11 -2.10 2.39 -90.62 -0.22 -2.32 16 3 C -0.14 -2.32 9.19 37.16 0.34 -1.98 16 4 C 0.08 1.49 4.31 -3.83 -0.02 1.48 16 5 N -0.54 -11.28 3.64 -236.07 -0.86 -12.14 16 6 C 0.19 4.96 4.76 -4.98 -0.02 4.93 16 7 C -0.50 -13.56 6.95 -34.44 -0.24 -13.80 16 8 H 0.08 2.03 4.51 -52.49 -0.24 1.80 16 9 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 10 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 11 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.06 1.12 4.68 -3.82 -0.02 1.10 16 16 C 0.05 0.82 4.87 -3.82 -0.02 0.80 16 17 N -0.52 -7.25 5.34 -230.28 -1.23 -8.48 16 18 C 0.04 0.43 6.70 -2.76 -0.02 0.41 16 19 C -0.13 -1.23 6.51 -25.38 -0.17 -1.39 16 20 C -0.10 -1.01 3.65 -88.76 -0.32 -1.33 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 22 C -0.14 -1.26 9.15 37.16 0.34 -0.92 16 23 C 0.04 0.50 4.83 -1.78 -0.01 0.49 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.50 6.64 -51.93 -0.34 1.15 16 27 H 0.12 2.63 4.99 -51.93 -0.26 2.37 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.87 5.85 -51.93 -0.30 0.57 16 32 H 0.02 0.45 7.77 -51.93 -0.40 0.04 16 33 H 0.00 -0.10 7.76 -51.93 -0.40 -0.51 16 34 H 0.02 0.58 7.74 -51.93 -0.40 0.18 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.07 1.23 6.78 -51.92 -0.35 0.88 16 38 H 0.04 0.65 7.98 -51.93 -0.41 0.24 16 39 H 0.07 1.16 6.14 -51.93 -0.32 0.84 16 40 H 0.04 0.50 7.67 -51.93 -0.40 0.10 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 47 H 0.08 1.11 7.75 -51.93 -0.40 0.70 16 48 H 0.05 0.63 7.92 -51.93 -0.41 0.22 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -28.11 358.24 -10.39 -38.51 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -9.26 Total: -0.76 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -0.15 Total: -13.14 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.35 Total: -46.38 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.11 -10.39 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.917 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds