Wall clock time and date at job start Mon Mar 30 2020 08:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 C 1.53000 * 109.47221 * 120.00171 * 2 1 3 5 5 N 1.46893 * 109.47156 * 58.68033 * 4 2 1 6 6 C 1.46900 * 111.00468 * 74.41387 * 5 4 2 7 7 C 1.50701 * 109.47108 * 284.75950 * 6 5 4 8 8 H 1.07998 * 120.00041 * 354.44380 * 7 6 5 9 9 C 1.37871 * 120.00012 * 174.43857 * 7 6 5 10 10 N 1.31521 * 119.99970 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00075 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47000 * 60.00309 * 11 9 7 13 13 H 1.48504 * 109.47330 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47171 * 300.00039 * 11 9 7 15 15 C 1.46899 * 110.99808 * 198.36891 * 5 4 2 16 16 C 1.53001 * 109.47201 * 66.04690 * 15 5 4 17 17 N 1.46905 * 109.47282 * 183.30708 * 16 15 5 18 18 C 1.47892 * 111.00034 * 183.85927 * 17 16 15 19 19 C 1.54000 * 107.05666 * 145.84346 * 18 17 16 20 20 C 1.54587 * 105.13798 * 358.77828 * 19 18 17 21 21 H 1.09000 * 110.72774 * 96.57934 * 20 19 18 22 22 C 1.53001 * 110.72101 * 219.68247 * 20 19 18 23 23 C 1.48733 * 111.04152 * 301.44081 * 17 16 15 24 24 H 1.09000 * 109.47315 * 299.99674 * 1 2 3 25 25 H 1.09004 * 109.47261 * 60.00065 * 1 2 3 26 26 H 1.09004 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47315 * 240.00326 * 2 1 3 28 28 H 1.09004 * 109.47528 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47198 * 300.00479 * 3 2 1 30 30 H 1.09001 * 109.47218 * 60.00406 * 3 2 1 31 31 H 1.08999 * 109.46954 * 298.67281 * 4 2 1 32 32 H 1.09005 * 109.47043 * 178.67915 * 4 2 1 33 33 H 1.09006 * 109.46820 * 44.75667 * 6 5 4 34 34 H 1.09003 * 109.47110 * 164.75601 * 6 5 4 35 35 H 0.96996 * 119.99878 * 179.97438 * 10 9 7 36 36 H 1.08998 * 109.47504 * 306.04511 * 15 5 4 37 37 H 1.09007 * 109.47401 * 186.04322 * 15 5 4 38 38 H 1.08992 * 109.47166 * 63.30814 * 16 15 5 39 39 H 1.09001 * 109.47045 * 303.30315 * 16 15 5 40 40 H 1.09002 * 109.91844 * 26.49777 * 18 17 16 41 41 H 1.08998 * 109.92260 * 265.19917 * 18 17 16 42 42 H 1.08995 * 110.30801 * 239.85731 * 19 18 17 43 43 H 1.08997 * 110.30704 * 117.69329 * 19 18 17 44 44 H 1.09002 * 109.47539 * 56.15243 * 22 20 19 45 45 H 1.09000 * 109.47274 * 296.14821 * 22 20 19 46 46 H 1.09007 * 109.47493 * 176.14692 * 22 20 19 47 47 H 1.08998 * 110.84192 * 81.95894 * 23 17 16 48 48 H 1.08998 * 110.58233 * 318.76562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5245 -2.0967 1.2652 6 6 2.2276 -2.9340 0.2842 7 6 1.7412 -2.5993 -1.1023 8 1 0.9235 -1.9064 -1.2351 9 6 2.3402 -3.1774 -2.2013 10 7 3.3358 -4.0215 -2.0396 11 14 1.7368 -2.7631 -3.9199 12 1 1.8830 -1.3045 -4.1575 13 1 2.5408 -3.5100 -4.9204 14 1 0.3075 -3.1447 -4.0481 15 6 1.6133 -2.6765 2.6120 16 6 0.6718 -1.9239 3.5544 17 7 0.8189 -2.4514 4.9176 18 6 -0.1427 -1.8104 5.8405 19 6 -0.5562 -2.8754 6.8732 20 6 0.2031 -4.1564 6.4582 21 1 1.1224 -4.2636 7.0341 22 6 -0.6854 -5.3907 6.6257 23 6 0.5193 -3.9076 4.9620 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6962 -0.1939 2.1390 32 1 3.1298 -0.7418 1.2374 33 1 3.2995 -2.7464 0.3483 34 1 2.0294 -3.9849 0.4950 35 1 3.7570 -4.4285 -2.8128 36 1 2.6368 -2.5920 2.9772 37 1 1.3264 -3.7275 2.5749 38 1 -0.3576 -2.0573 3.2224 39 1 0.9216 -0.8629 3.5466 40 1 -1.0181 -1.4703 5.2872 41 1 0.3313 -0.9685 6.3449 42 1 -1.6324 -3.0437 6.8329 43 1 -0.2580 -2.5667 7.8751 44 1 -1.6032 -5.2582 6.0528 45 1 -0.9306 -5.5215 7.6797 46 1 -0.1553 -6.2718 6.2639 47 1 1.3852 -4.4913 4.6495 48 1 -0.3465 -4.1397 4.3420 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:51:38 Heat of formation + Delta-G solvation = -23.232397 kcal Electronic energy + Delta-G solvation = -21756.565514 eV Core-core repulsion = 18845.094680 eV Total energy + Delta-G solvation = -2911.470834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.28750 -39.03405 -35.55351 -34.91425 -33.88964 -31.15340 -29.65118 -28.19941 -27.78449 -27.13604 -25.89869 -23.61480 -22.30865 -21.58874 -20.91763 -20.55217 -18.42467 -17.28073 -16.85657 -16.51586 -16.28827 -15.90228 -15.50502 -15.13978 -14.63658 -14.53103 -14.09812 -14.01931 -13.95206 -13.90742 -13.60540 -13.17151 -13.10769 -12.88034 -12.78997 -12.73722 -12.51071 -12.36519 -12.22356 -12.00290 -11.76847 -11.72708 -11.60373 -11.56891 -11.40528 -11.33677 -11.17851 -10.84749 -10.47100 -9.39319 -8.98901 -8.13228 -6.18154 1.42400 1.44715 1.51894 2.42704 2.87561 3.18471 3.47723 3.67255 3.74161 4.02556 4.03676 4.16082 4.27967 4.32188 4.35598 4.50992 4.52645 4.60468 4.62698 4.72078 4.75714 4.78020 4.81392 4.85873 4.93436 4.96142 4.99676 5.02902 5.09313 5.10317 5.15301 5.18077 5.24258 5.25523 5.30283 5.33419 5.44797 5.46918 5.67728 5.82642 5.88127 5.95717 6.05744 6.15333 6.41870 6.67976 6.95780 7.47401 8.97709 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.004560 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.014080 B = 6138.469290 C = 7015.405096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C -0.137 4.137 4 C 0.079 3.921 5 N -0.533 5.533 6 C 0.209 3.791 7 C -0.505 4.505 8 H 0.087 0.913 9 C -0.002 4.002 10 N -0.940 5.940 11 Si 0.957 3.043 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.065 3.935 16 C 0.070 3.930 17 N -0.532 5.532 18 C 0.034 3.966 19 C -0.120 4.120 20 C -0.093 4.093 21 H 0.081 0.919 22 C -0.140 4.140 23 C 0.035 3.965 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.001 0.999 33 H -0.039 1.039 34 H -0.007 1.007 35 H 0.260 0.740 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 5.272 15.843 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.130 4.130 3 C -0.194 4.194 4 C -0.049 4.049 5 N -0.257 5.257 6 C 0.083 3.917 7 C -0.543 4.543 8 H 0.105 0.895 9 C -0.199 4.199 10 N -0.582 5.582 11 Si 0.782 3.218 12 H -0.190 1.190 13 H -0.215 1.215 14 H -0.193 1.193 15 C -0.064 4.064 16 C -0.059 4.059 17 N -0.256 5.256 18 C -0.094 4.094 19 C -0.158 4.158 20 C -0.112 4.112 21 H 0.099 0.901 22 C -0.197 4.197 23 C -0.093 4.093 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.020 0.980 33 H -0.022 1.022 34 H 0.011 0.989 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.055 0.945 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.235 5.299 15.769 18.562 hybrid contribution 0.431 -0.540 -1.289 1.462 sum -7.804 4.759 14.480 17.124 Atomic orbital electron populations 1.21536 0.94621 1.01257 1.00288 1.21442 0.96935 0.95450 0.99149 1.21762 1.00215 0.95445 1.02027 1.22027 0.95018 0.89209 0.98662 1.62024 1.56773 1.02643 1.04264 1.19425 0.89947 0.91019 0.91309 1.21713 1.17023 1.25239 0.90359 0.89476 1.25872 0.95345 0.95290 1.03390 1.70107 1.25256 1.31376 1.31425 0.85607 0.78434 0.78677 0.79036 1.18995 1.21476 1.19315 1.21951 0.97269 0.98145 0.89031 1.22076 0.97449 0.99153 0.87195 1.64733 1.49613 1.04145 1.07152 1.22923 0.93933 0.98264 0.94276 1.22475 1.00418 0.93699 0.99221 1.22059 0.99398 0.95537 0.94205 0.90088 1.21753 0.98966 0.96508 1.02501 1.23360 0.99413 0.89118 0.97426 0.92655 0.93596 0.93351 0.90721 0.93821 0.92270 0.91730 0.90435 0.98041 1.02161 0.98855 0.93116 0.96482 0.92715 0.94527 0.90357 0.93749 0.89838 0.90533 0.89658 0.92807 0.90965 0.92610 0.91437 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 8.34 71.98 0.60 -3.48 16 2 C -0.11 -4.16 2.39 -10.80 -0.03 -4.19 16 3 C -0.14 -4.09 9.19 71.98 0.66 -3.43 16 4 C 0.08 3.06 4.31 86.30 0.37 3.43 16 5 N -0.53 -23.06 3.64 -900.78 -3.28 -26.34 16 6 C 0.21 11.28 4.76 85.56 0.41 11.69 16 7 C -0.51 -27.94 6.95 25.60 0.18 -27.76 16 8 H 0.09 4.59 4.51 -2.91 -0.01 4.58 16 9 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 10 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 11 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 C 0.06 2.45 4.68 86.30 0.40 2.86 16 16 C 0.07 2.13 4.87 86.30 0.42 2.55 16 17 N -0.53 -14.31 5.34 -882.47 -4.72 -19.02 16 18 C 0.03 0.70 6.70 86.45 0.58 1.28 16 19 C -0.12 -2.01 6.51 31.47 0.20 -1.81 16 20 C -0.09 -1.77 3.65 -9.59 -0.03 -1.81 16 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 22 C -0.14 -2.22 9.15 71.98 0.66 -1.56 16 23 C 0.03 0.88 4.83 86.61 0.42 1.30 16 24 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.05 1.89 6.64 -2.38 -0.02 1.88 16 27 H 0.07 3.44 4.99 -2.39 -0.01 3.42 16 28 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 2.59 5.85 -2.39 -0.01 2.57 16 32 H 0.00 0.06 7.77 -2.38 -0.02 0.04 16 33 H -0.04 -2.36 7.76 -2.38 -0.02 -2.38 16 34 H -0.01 -0.39 7.74 -2.39 -0.02 -0.41 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 37 H 0.05 2.17 6.78 -2.38 -0.02 2.15 16 38 H 0.04 1.15 7.98 -2.39 -0.02 1.13 16 39 H 0.08 2.31 6.14 -2.39 -0.01 2.30 16 40 H 0.04 0.92 7.67 -2.39 -0.02 0.91 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.14 7.84 -2.39 -0.02 1.12 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.07 1.88 7.75 -2.39 -0.02 1.86 16 48 H 0.04 1.05 7.92 -2.39 -0.02 1.04 16 Total: -1.00 -62.36 358.24 0.50 -61.86 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.88 Total: 14.76 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 5.31 Total: -20.57 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -7.71 Total: -102.40 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.36 0.50 -61.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.624 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds