Wall clock time and date at job start Mon Mar 30 2020 08:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50031 * 2 1 4 4 C 1.53037 * 109.50218 * 239.88182 * 2 1 3 5 5 N 1.46850 * 109.52175 * 180.87653 * 4 2 1 6 6 C 1.46896 * 111.00099 * 185.83972 * 5 4 2 7 7 C 1.53005 * 109.47189 * 301.83854 * 6 5 4 8 8 C 1.52996 * 109.47090 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47153 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.46847 * 111.19554 * 61.74245 * 5 4 2 19 19 C 1.53034 * 109.52366 * 298.25671 * 18 5 4 20 20 C 1.53114 * 109.50410 * 120.07747 * 2 1 3 21 21 H 1.08996 * 109.58047 * 57.65933 * 20 2 1 22 22 N 1.46898 * 109.52589 * 297.50013 * 20 2 1 23 23 C 1.46896 * 111.00409 * 175.31713 * 22 20 2 24 24 C 1.46908 * 111.00155 * 299.27430 * 22 20 2 25 25 H 1.09007 * 109.47149 * 299.91912 * 1 2 3 26 26 H 1.08995 * 109.47617 * 59.92357 * 1 2 3 27 27 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46450 * 60.86327 * 4 2 1 29 29 H 1.08997 * 109.46321 * 300.89466 * 4 2 1 30 30 H 1.08994 * 109.47695 * 181.83856 * 6 5 4 31 31 H 1.09001 * 109.46987 * 61.83369 * 6 5 4 32 32 H 1.09007 * 109.47086 * 59.99578 * 7 6 5 33 33 H 1.09001 * 109.46760 * 299.99655 * 7 6 5 34 34 H 1.08999 * 109.46983 * 60.00393 * 8 7 6 35 35 H 1.08993 * 109.47310 * 299.99833 * 8 7 6 36 36 H 1.09004 * 109.47178 * 60.00488 * 9 8 7 37 37 H 1.08993 * 109.47411 * 300.00171 * 9 8 7 38 38 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 39 39 H 1.08995 * 109.46165 * 58.27642 * 18 5 4 40 40 H 1.09000 * 109.45776 * 178.24963 * 18 5 4 41 41 H 1.09002 * 109.50569 * 179.12542 * 19 18 5 42 42 H 1.09009 * 109.50524 * 299.23557 * 19 18 5 43 43 H 1.09003 * 109.47305 * 60.00296 * 23 22 20 44 44 H 1.08997 * 109.47392 * 180.02562 * 23 22 20 45 45 H 1.08995 * 109.47243 * 300.00243 * 23 22 20 46 46 H 1.09004 * 109.46965 * 59.99450 * 24 22 20 47 47 H 1.08996 * 109.47217 * 179.97438 * 24 22 20 48 48 H 1.08999 * 109.46851 * 300.00080 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7239 -1.2478 5 7 3.5092 -0.7425 -1.2377 6 6 4.0372 -1.3066 -2.4870 7 6 3.4929 -2.7239 -2.6767 8 6 4.0423 -3.3112 -3.9782 9 6 3.4985 -4.7287 -4.1676 10 6 4.0391 -5.3071 -5.4499 11 1 4.7044 -4.7223 -6.0677 12 6 3.6844 -6.5828 -5.8344 13 7 2.8785 -7.2969 -5.0793 14 14 4.3552 -7.2999 -7.4235 15 1 3.8320 -8.6779 -7.6043 16 1 3.9282 -6.4543 -8.5671 17 1 5.8384 -7.3376 -7.3622 18 6 4.0229 -1.4729 -0.0719 19 6 3.5712 -0.7714 1.2110 20 6 2.0412 -0.7233 1.2489 21 1 1.6453 -1.7386 1.2708 22 7 1.6025 0.0005 2.4496 23 6 1.9806 -0.7254 3.6695 24 6 2.1370 1.3688 2.4642 25 1 -0.3634 0.5126 0.8908 26 1 -0.3634 0.5150 -0.8892 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6905 -0.2030 -2.1389 29 1 1.6647 -1.7469 -1.2538 30 1 5.1257 -1.3388 -2.4397 31 1 3.7282 -0.6834 -3.3262 32 1 2.4043 -2.6918 -2.7240 33 1 3.8019 -3.3471 -1.8375 34 1 5.1308 -3.3434 -3.9313 35 1 3.7330 -2.6880 -4.8172 36 1 2.4099 -4.6970 -4.2144 37 1 3.8081 -5.3518 -3.3286 38 1 2.5304 -6.9247 -4.2540 39 1 3.6375 -2.4924 -0.0835 40 1 5.1121 -1.4960 -0.1089 41 1 3.9396 -1.3225 2.0762 42 1 3.9678 0.2438 1.2297 43 1 3.0643 -0.8366 3.7050 44 1 1.6434 -0.1678 4.5433 45 1 1.5142 -1.7105 3.6654 46 1 1.7842 1.9060 1.5837 47 1 1.7965 1.8823 3.3633 48 1 3.2263 1.3334 2.4559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:59:12 Heat of formation + Delta-G solvation = -20.038539 kcal Electronic energy + Delta-G solvation = -21445.931979 eV Core-core repulsion = 18534.599641 eV Total energy + Delta-G solvation = -2911.332338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.15467 -37.41829 -34.80387 -33.47770 -32.33265 -31.01396 -27.94893 -27.86078 -26.63540 -25.49179 -23.86497 -22.57861 -21.89627 -20.79411 -20.40263 -19.08084 -16.67845 -16.33735 -15.70983 -15.24696 -15.01490 -14.91895 -14.57740 -14.00049 -13.78482 -13.70542 -13.56990 -12.86779 -12.76660 -12.52256 -12.50006 -12.23116 -12.00559 -11.95542 -11.88200 -11.64153 -11.30920 -11.13507 -10.94756 -10.81729 -10.71616 -10.61158 -10.40314 -10.25930 -10.11707 -9.75726 -9.75139 -8.57494 -8.45512 -8.30477 -8.08497 -6.34004 -4.02620 3.44466 3.46741 3.65467 3.72153 3.96384 4.51430 4.56462 4.66317 4.85087 4.93176 5.03444 5.10259 5.21770 5.25971 5.30254 5.32788 5.38557 5.41336 5.43462 5.46077 5.58027 5.62290 5.67487 5.68074 5.74849 5.77602 5.81188 5.87205 5.97374 6.02046 6.05515 6.18661 6.21861 6.29162 6.41400 6.62889 6.77671 6.81142 6.83822 6.99269 7.14114 7.16211 7.44250 7.57708 8.25619 8.49068 8.91237 9.70014 11.06541 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.003108 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.915138 B = 9005.711947 C = 9061.138591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 H 0.077 0.923 4 C 0.056 3.944 5 N -0.538 5.538 6 C 0.055 3.945 7 C -0.155 4.155 8 C -0.099 4.099 9 C 0.008 3.992 10 C -0.602 4.602 11 H 0.048 0.952 12 C 0.012 3.988 13 N -0.915 5.915 14 Si 1.069 2.931 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.288 1.288 18 C 0.057 3.943 19 C -0.149 4.149 20 C 0.087 3.913 21 H 0.079 0.921 22 N -0.537 5.537 23 C 0.021 3.979 24 C 0.017 3.983 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.268 0.732 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.028 0.972 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.573 17.277 15.901 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 H 0.096 0.904 4 C -0.072 4.072 5 N -0.261 5.261 6 C -0.072 4.072 7 C -0.194 4.194 8 C -0.137 4.137 9 C -0.029 4.029 10 C -0.640 4.640 11 H 0.066 0.934 12 C -0.191 4.191 13 N -0.551 5.551 14 Si 0.897 3.103 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.215 1.215 18 C -0.072 4.072 19 C -0.189 4.189 20 C -0.022 4.022 21 H 0.098 0.902 22 N -0.259 5.259 23 C -0.127 4.127 24 C -0.131 4.131 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.951 16.459 14.989 22.347 hybrid contribution 0.720 0.391 0.961 1.262 sum -1.232 16.850 15.950 23.234 Atomic orbital electron populations 1.21695 0.94321 1.01893 1.01732 1.21207 0.95921 0.99919 0.92790 0.90437 1.22175 0.87634 0.99467 0.97964 1.62221 1.07962 1.53400 1.02531 1.22268 0.99754 0.94174 0.91052 1.22299 1.00784 0.96443 0.99885 1.21411 0.99441 0.98561 0.94329 1.19219 0.95534 0.91250 0.96873 1.22093 1.31911 1.02397 1.07595 0.93398 1.25873 0.95414 0.94230 1.03566 1.70782 1.30647 1.39491 1.14186 0.83552 0.75808 0.76220 0.74723 1.20760 1.21439 1.21461 1.21992 0.99873 0.95480 0.89865 1.22264 0.97393 1.01795 0.97403 1.21845 0.92707 0.97819 0.89784 0.90238 1.62237 1.59007 1.02635 1.02024 1.22397 0.98762 0.99187 0.92395 1.22471 0.97892 0.90210 1.02521 0.91474 0.93139 0.93000 0.90598 0.94090 0.90961 0.90785 0.92382 0.92677 0.93345 0.93256 0.97759 0.97815 0.92189 0.94335 0.90934 0.91719 0.90864 0.95347 0.91597 0.91483 0.90971 0.91854 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.07 37.16 0.34 -1.03 16 2 C -0.08 -0.83 2.11 -90.54 -0.19 -1.02 16 3 H 0.08 0.83 6.30 -51.93 -0.33 0.50 16 4 C 0.06 0.69 4.12 -3.83 -0.02 0.67 16 5 N -0.54 -6.95 4.86 -234.68 -1.14 -8.09 16 6 C 0.06 0.79 5.36 -3.82 -0.02 0.77 16 7 C -0.16 -2.66 4.52 -26.73 -0.12 -2.78 16 8 C -0.10 -2.09 5.15 -26.73 -0.14 -2.23 16 9 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 10 C -0.60 -17.72 9.11 -34.44 -0.31 -18.04 16 11 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 12 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 13 N -0.91 -28.80 13.65 55.43 0.76 -28.04 16 14 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.06 0.69 5.05 -3.84 -0.02 0.67 16 19 C -0.15 -1.54 4.69 -26.65 -0.12 -1.66 16 20 C 0.09 0.89 1.72 -67.59 -0.12 0.78 16 21 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 22 N -0.54 -5.01 4.36 -243.04 -1.06 -6.07 16 23 C 0.02 0.17 9.31 60.06 0.56 0.73 16 24 C 0.02 0.14 8.82 60.07 0.53 0.67 16 25 H 0.07 0.65 7.68 -51.93 -0.40 0.26 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.04 0.56 6.61 -51.93 -0.34 0.21 16 30 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.01 6.51 -51.93 -0.34 0.68 16 33 H 0.05 0.97 6.68 -51.93 -0.35 0.62 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 37 H 0.00 0.10 8.00 -51.93 -0.42 -0.32 16 38 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 39 H 0.04 0.51 6.75 -51.93 -0.35 0.16 16 40 H 0.07 0.86 8.06 -51.93 -0.42 0.45 16 41 H 0.06 0.63 6.65 -51.93 -0.35 0.28 16 42 H 0.07 0.77 6.27 -51.92 -0.33 0.45 16 43 H 0.03 0.23 6.50 -51.93 -0.34 -0.11 16 44 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.60 6.27 -51.93 -0.33 0.28 16 47 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 48 H 0.03 0.25 6.23 -51.93 -0.32 -0.07 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -30.92 353.76 -10.20 -41.11 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -9.15 Total: -2.91 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 0.15 Total: -22.11 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -1.44 Total: -42.19 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.92 -10.20 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.076 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds