Wall clock time and date at job start Mon Mar 30 2020 08:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.50031 * 2 1 4 4 C 1.53037 * 109.50218 * 239.88182 * 2 1 3 5 5 N 1.46850 * 109.52175 * 180.87653 * 4 2 1 6 6 C 1.46896 * 111.00099 * 185.83972 * 5 4 2 7 7 C 1.53005 * 109.47189 * 301.83854 * 6 5 4 8 8 C 1.52996 * 109.47090 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.47153 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99503 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00434 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99826 * 359.72891 * 12 10 9 14 14 Si 1.86800 * 120.00406 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47364 * 179.72558 * 14 12 10 16 16 H 1.48508 * 109.46883 * 299.72681 * 14 12 10 17 17 H 1.48497 * 109.46870 * 59.72491 * 14 12 10 18 18 C 1.46847 * 111.19554 * 61.74245 * 5 4 2 19 19 C 1.53034 * 109.52366 * 298.25671 * 18 5 4 20 20 C 1.53114 * 109.50410 * 120.07747 * 2 1 3 21 21 H 1.08996 * 109.58047 * 57.65933 * 20 2 1 22 22 N 1.46898 * 109.52589 * 297.50013 * 20 2 1 23 23 C 1.46896 * 111.00409 * 175.31713 * 22 20 2 24 24 C 1.46908 * 111.00155 * 299.27430 * 22 20 2 25 25 H 1.09007 * 109.47149 * 299.91912 * 1 2 3 26 26 H 1.08995 * 109.47617 * 59.92357 * 1 2 3 27 27 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46450 * 60.86327 * 4 2 1 29 29 H 1.08997 * 109.46321 * 300.89466 * 4 2 1 30 30 H 1.08994 * 109.47695 * 181.83856 * 6 5 4 31 31 H 1.09001 * 109.46987 * 61.83369 * 6 5 4 32 32 H 1.09007 * 109.47086 * 59.99578 * 7 6 5 33 33 H 1.09001 * 109.46760 * 299.99655 * 7 6 5 34 34 H 1.08999 * 109.46983 * 60.00393 * 8 7 6 35 35 H 1.08993 * 109.47310 * 299.99833 * 8 7 6 36 36 H 1.09004 * 109.47178 * 60.00488 * 9 8 7 37 37 H 1.08993 * 109.47411 * 300.00171 * 9 8 7 38 38 H 0.97000 * 120.00236 * 0.27947 * 13 12 10 39 39 H 1.08995 * 109.46165 * 58.27642 * 18 5 4 40 40 H 1.09000 * 109.45776 * 178.24963 * 18 5 4 41 41 H 1.09002 * 109.50569 * 179.12542 * 19 18 5 42 42 H 1.09009 * 109.50524 * 299.23557 * 19 18 5 43 43 H 1.09003 * 109.47305 * 60.00296 * 23 22 20 44 44 H 1.08997 * 109.47392 * 180.02562 * 23 22 20 45 45 H 1.08995 * 109.47243 * 300.00243 * 23 22 20 46 46 H 1.09004 * 109.46965 * 59.99450 * 24 22 20 47 47 H 1.08996 * 109.47217 * 179.97438 * 24 22 20 48 48 H 1.08999 * 109.46851 * 300.00080 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0409 -0.7239 -1.2478 5 7 3.5092 -0.7425 -1.2377 6 6 4.0372 -1.3066 -2.4870 7 6 3.4929 -2.7239 -2.6767 8 6 4.0423 -3.3112 -3.9782 9 6 3.4985 -4.7287 -4.1676 10 6 4.0391 -5.3071 -5.4499 11 1 4.7044 -4.7223 -6.0677 12 6 3.6844 -6.5828 -5.8344 13 7 2.8785 -7.2969 -5.0793 14 14 4.3552 -7.2999 -7.4235 15 1 3.8320 -8.6779 -7.6043 16 1 3.9282 -6.4543 -8.5671 17 1 5.8384 -7.3376 -7.3622 18 6 4.0229 -1.4729 -0.0719 19 6 3.5712 -0.7714 1.2110 20 6 2.0412 -0.7233 1.2489 21 1 1.6453 -1.7386 1.2708 22 7 1.6025 0.0005 2.4496 23 6 1.9806 -0.7254 3.6695 24 6 2.1370 1.3688 2.4642 25 1 -0.3634 0.5126 0.8908 26 1 -0.3634 0.5150 -0.8892 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6905 -0.2030 -2.1389 29 1 1.6647 -1.7469 -1.2538 30 1 5.1257 -1.3388 -2.4397 31 1 3.7282 -0.6834 -3.3262 32 1 2.4043 -2.6918 -2.7240 33 1 3.8019 -3.3471 -1.8375 34 1 5.1308 -3.3434 -3.9313 35 1 3.7330 -2.6880 -4.8172 36 1 2.4099 -4.6970 -4.2144 37 1 3.8081 -5.3518 -3.3286 38 1 2.5304 -6.9247 -4.2540 39 1 3.6375 -2.4924 -0.0835 40 1 5.1121 -1.4960 -0.1089 41 1 3.9396 -1.3225 2.0762 42 1 3.9678 0.2438 1.2297 43 1 3.0643 -0.8366 3.7050 44 1 1.6434 -0.1678 4.5433 45 1 1.5142 -1.7105 3.6654 46 1 1.7842 1.9060 1.5837 47 1 1.7965 1.8823 3.3633 48 1 3.2263 1.3334 2.4559 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776598.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:59:11 Heat of formation + Delta-G solvation = -39.239911 kcal Electronic energy + Delta-G solvation = -21446.764613 eV Core-core repulsion = 18534.599641 eV Total energy + Delta-G solvation = -2912.164972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06875 -38.44011 -36.52211 -34.84016 -33.75018 -32.24979 -29.53855 -28.52233 -27.52762 -26.80462 -25.38936 -23.96591 -22.74845 -22.47636 -21.57721 -20.03885 -18.90160 -17.19126 -16.79974 -16.11981 -16.10366 -16.03499 -15.66956 -15.64271 -15.24109 -14.83103 -14.65886 -14.34378 -14.02991 -13.98330 -13.58347 -13.16672 -13.05226 -12.87120 -12.79789 -12.67850 -12.61299 -12.52988 -12.32753 -12.08552 -11.99947 -11.94750 -11.76127 -11.63694 -11.60942 -11.34599 -11.15033 -10.71330 -10.58234 -9.29191 -9.16155 -8.73085 -6.44129 1.49992 1.59074 1.78567 2.54543 2.88246 3.02759 3.11743 3.65368 3.78648 3.89643 3.92041 4.07902 4.12694 4.28176 4.31254 4.31881 4.43301 4.45364 4.51510 4.57092 4.59455 4.66983 4.67857 4.72270 4.80082 4.81537 4.84849 4.88604 4.91543 5.01474 5.04186 5.05831 5.10783 5.14221 5.16114 5.19574 5.36581 5.42140 5.45760 5.50078 5.95915 6.01394 6.08693 6.11153 6.14326 6.16580 6.53064 7.39152 8.67038 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.035438 B = 0.003108 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.915138 B = 9005.711947 C = 9061.138591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 H 0.082 0.918 4 C 0.056 3.944 5 N -0.533 5.533 6 C 0.064 3.936 7 C -0.141 4.141 8 C -0.088 4.088 9 C 0.008 3.992 10 C -0.622 4.622 11 H 0.052 0.948 12 C -0.043 4.043 13 N -0.938 5.938 14 Si 1.120 2.880 15 H -0.283 1.283 16 H -0.267 1.267 17 H -0.267 1.267 18 C 0.055 3.945 19 C -0.140 4.140 20 C 0.090 3.910 21 H 0.064 0.936 22 N -0.543 5.543 23 C 0.020 3.980 24 C 0.018 3.982 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.023 0.977 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.053 0.947 36 H -0.017 1.017 37 H -0.018 1.018 38 H 0.253 0.747 39 H 0.022 0.978 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.030 0.970 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 18.815 15.877 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 H 0.100 0.900 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.064 4.064 7 C -0.180 4.180 8 C -0.126 4.126 9 C -0.029 4.029 10 C -0.659 4.659 11 H 0.071 0.929 12 C -0.239 4.239 13 N -0.576 5.576 14 Si 0.940 3.060 15 H -0.208 1.208 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.074 4.074 19 C -0.179 4.179 20 C -0.019 4.019 21 H 0.082 0.918 22 N -0.266 5.266 23 C -0.128 4.128 24 C -0.130 4.130 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.001 0.999 37 H 0.000 1.000 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.162 18.031 14.994 23.479 hybrid contribution 0.444 -0.084 1.024 1.119 sum -0.718 17.947 16.018 24.066 Atomic orbital electron populations 1.21640 0.93807 1.01404 1.02211 1.21141 0.96252 0.99745 0.91983 0.89977 1.22212 0.87238 0.98710 0.99120 1.62289 1.08296 1.52826 1.02153 1.22170 1.00085 0.92019 0.92122 1.22147 1.00263 0.98244 0.97393 1.21252 0.99458 0.95349 0.96563 1.19192 0.94240 0.94266 0.95210 1.22558 1.31898 1.02903 1.08590 0.92931 1.27569 0.94804 0.95099 1.06475 1.70925 1.32290 1.40031 1.14347 0.82922 0.76354 0.75663 0.71083 1.20791 1.19179 1.19227 1.22050 1.00097 0.94784 0.90469 1.22186 0.97366 1.01769 0.96577 1.21734 0.92587 0.97168 0.90370 0.91801 1.62235 1.59259 1.03180 1.01909 1.22431 0.98885 0.99144 0.92302 1.22497 0.97861 0.89491 1.03126 0.91086 0.92517 0.93955 0.90391 0.95895 0.90206 0.90064 0.93059 0.93432 0.92977 0.92855 0.99876 0.99959 0.93757 0.95996 0.90487 0.90969 0.90468 0.95142 0.90303 0.91891 0.91086 0.90615 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.07 71.98 0.65 -1.85 16 2 C -0.07 -1.44 2.11 -10.74 -0.02 -1.46 16 3 H 0.08 1.61 6.30 -2.38 -0.02 1.59 16 4 C 0.06 1.33 4.12 86.32 0.36 1.69 16 5 N -0.53 -13.17 4.86 -896.38 -4.35 -17.52 16 6 C 0.06 1.75 5.36 86.31 0.46 2.21 16 7 C -0.14 -4.85 4.52 30.59 0.14 -4.72 16 8 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 9 C 0.01 0.44 4.28 29.85 0.13 0.56 16 10 C -0.62 -36.89 9.11 25.60 0.23 -36.65 16 11 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 12 C -0.04 -2.56 5.46 84.65 0.46 -2.10 16 13 N -0.94 -60.24 13.65 21.45 0.29 -59.94 16 14 Si 1.12 51.24 29.90 68.60 2.05 53.29 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 18 C 0.05 1.28 5.05 86.32 0.44 1.72 16 19 C -0.14 -2.70 4.69 30.65 0.14 -2.56 16 20 C 0.09 1.78 1.72 44.99 0.08 1.86 16 21 H 0.06 1.47 8.13 -2.39 -0.02 1.45 16 22 N -0.54 -9.31 4.36 -922.83 -4.03 -13.34 16 23 C 0.02 0.30 9.31 127.69 1.19 1.49 16 24 C 0.02 0.26 8.82 127.69 1.13 1.39 16 25 H 0.07 1.29 7.68 -2.38 -0.02 1.27 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 29 H 0.02 0.63 6.61 -2.39 -0.02 0.62 16 30 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.82 6.51 -2.38 -0.02 1.81 16 33 H 0.05 1.69 6.68 -2.39 -0.02 1.68 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H -0.02 -0.99 8.01 -2.39 -0.02 -1.01 16 37 H -0.02 -1.04 8.00 -2.39 -0.02 -1.06 16 38 H 0.25 16.52 7.22 -92.71 -0.67 15.85 16 39 H 0.02 0.59 6.75 -2.39 -0.02 0.57 16 40 H 0.08 1.74 8.06 -2.39 -0.02 1.72 16 41 H 0.07 1.30 6.65 -2.39 -0.02 1.28 16 42 H 0.08 1.47 6.27 -2.38 -0.01 1.45 16 43 H 0.03 0.43 6.50 -2.39 -0.02 0.42 16 44 H 0.08 0.96 8.12 -2.39 -0.02 0.94 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.07 1.04 6.27 -2.39 -0.01 1.02 16 47 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 48 H 0.03 0.44 6.23 -2.39 -0.01 0.43 16 Total: -1.00 -66.31 353.76 0.49 -65.82 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.98 Total: 13.66 kcal Atomic # 6 Polarization: -47.51 SS G_CDS: 5.54 Total: -41.98 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -8.09 Total: -90.80 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -66.31 0.49 -65.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776598.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.582 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds