Wall clock time and date at job start Mon Mar 30 2020 08:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.50377 * 2 1 4 4 C 1.53126 * 109.49891 * 239.92334 * 2 1 3 5 5 C 1.53119 * 109.16079 * 297.71631 * 4 2 1 6 6 C 1.53028 * 109.27963 * 302.34434 * 5 4 2 7 7 H 1.08999 * 109.45629 * 299.17207 * 6 5 4 8 8 C 1.53000 * 109.46427 * 179.19939 * 6 5 4 9 9 N 1.46900 * 109.47100 * 175.83491 * 8 6 5 10 10 N 1.46847 * 109.52309 * 59.18091 * 6 5 4 11 11 C 1.46900 * 111.00246 * 174.16185 * 10 6 5 12 12 C 1.52999 * 109.47561 * 167.19385 * 11 10 6 13 13 C 1.52996 * 109.47223 * 174.39346 * 12 11 10 14 14 C 1.53006 * 109.46760 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47029 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00335 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47387 * 89.99645 * 19 17 15 21 21 H 1.48505 * 109.46926 * 210.00026 * 19 17 15 22 22 H 1.48507 * 109.47172 * 329.99181 * 19 17 15 23 23 C 1.46846 * 111.19788 * 298.25790 * 10 6 5 24 24 H 1.09003 * 109.45940 * 181.75666 * 23 10 6 25 25 C 1.52999 * 109.46547 * 301.72192 * 23 10 6 26 26 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47136 * 300.07611 * 1 2 3 28 28 H 1.09011 * 109.46976 * 60.07000 * 1 2 3 29 29 H 1.09000 * 109.52163 * 177.80954 * 4 2 1 30 30 H 1.09008 * 109.51980 * 57.62276 * 4 2 1 31 31 H 1.09006 * 109.49703 * 182.40356 * 5 4 2 32 32 H 1.08997 * 109.53726 * 62.31099 * 5 4 2 33 33 H 1.09004 * 109.46534 * 295.83000 * 8 6 5 34 34 H 1.08990 * 109.47043 * 55.83111 * 8 6 5 35 35 H 1.00900 * 110.99730 * 179.97438 * 9 8 6 36 36 H 1.00899 * 111.00258 * 303.95396 * 9 8 6 37 37 H 1.08997 * 109.47067 * 47.19229 * 11 10 6 38 38 H 1.08999 * 109.46909 * 287.19289 * 11 10 6 39 39 H 1.09003 * 109.47177 * 294.39877 * 12 11 10 40 40 H 1.09006 * 109.46732 * 54.39037 * 12 11 10 41 41 H 1.08996 * 109.47080 * 299.99801 * 13 12 11 42 42 H 1.08997 * 109.47358 * 60.00116 * 13 12 11 43 43 H 1.08996 * 109.47114 * 299.99722 * 14 13 12 44 44 H 1.08997 * 109.47138 * 59.99923 * 14 13 12 45 45 H 0.96998 * 119.99831 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.46405 * 55.33598 * 25 23 10 47 47 H 1.08998 * 109.47313 * 175.33199 * 25 23 10 48 48 H 1.09003 * 109.47229 * 295.34023 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2491 5 6 1.5748 -2.1813 -1.2117 6 6 2.0844 -2.8421 0.0711 7 1 3.1741 -2.8196 0.0829 8 6 1.6039 -4.2938 0.1225 9 7 2.1746 -4.9570 1.3024 10 7 1.5675 -2.1140 1.2369 11 6 1.9222 -2.8006 2.4862 12 6 1.6561 -1.8715 3.6723 13 6 1.8920 -2.6318 4.9788 14 6 1.6252 -1.7027 6.1648 15 6 1.8570 -2.4518 7.4518 16 1 2.1643 -3.4869 7.4262 17 6 1.6768 -1.8159 8.6617 18 7 1.3031 -0.5553 8.6927 19 14 1.9648 -2.7442 10.2569 20 1 3.3830 -2.5911 10.6696 21 1 1.0792 -2.1960 11.3154 22 1 1.6609 -4.1836 10.0538 23 6 2.0409 -0.7240 1.2476 24 1 1.6670 -0.2199 2.1388 25 6 3.5708 -0.7066 1.2566 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3633 0.5128 -0.8907 29 1 3.1304 -0.6898 -1.2694 30 1 1.6441 -0.2366 -2.1400 31 1 1.9714 -2.7125 -2.0770 32 1 0.4856 -2.2162 -1.2311 33 1 0.5158 -4.3143 0.1849 34 1 1.9261 -4.8152 -0.7788 35 1 1.8716 -5.9178 1.3591 36 1 3.1817 -4.8947 1.3006 37 1 2.9782 -3.0700 2.4655 38 1 1.3190 -3.7027 2.5889 39 1 2.3304 -1.0165 3.6225 40 1 0.6239 -1.5227 3.6361 41 1 1.2177 -3.4867 5.0285 42 1 2.9241 -2.9806 5.0149 43 1 2.2993 -0.8476 6.1153 44 1 0.5931 -1.3544 6.1284 45 1 1.1766 -0.1077 9.5440 46 1 3.9456 -1.2821 0.4101 47 1 3.9229 0.3222 1.1809 48 1 3.9338 -1.1476 2.1850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692628817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:37:22 Heat of formation + Delta-G solvation = -14.755999 kcal Electronic energy + Delta-G solvation = -22070.774203 eV Core-core repulsion = 19159.670934 eV Total energy + Delta-G solvation = -2911.103270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30334 -35.68493 -35.07183 -33.34545 -31.71880 -31.46350 -29.27288 -28.04829 -26.36144 -24.37196 -23.77589 -23.07797 -21.28221 -20.51722 -19.67627 -18.04614 -16.23709 -16.09868 -15.70981 -15.53120 -14.99489 -14.64758 -14.38163 -14.09354 -13.75212 -13.28974 -13.12984 -12.86125 -12.70857 -12.36346 -12.23342 -11.97023 -11.79180 -11.54690 -11.37314 -11.25282 -11.12296 -10.91804 -10.85395 -10.54745 -10.42949 -10.40442 -10.23010 -10.06270 -9.88286 -9.45090 -9.12255 -8.89322 -8.37419 -8.24679 -7.83155 -5.90057 -3.91542 3.37555 3.43346 3.47310 4.10231 4.38788 4.54059 4.67749 4.77320 4.91175 5.09793 5.16955 5.28234 5.32276 5.43764 5.45353 5.50912 5.52529 5.64960 5.73249 5.76680 5.77948 5.84909 5.88907 5.91183 6.00484 6.11521 6.13356 6.20220 6.22174 6.30528 6.45414 6.46935 6.57332 6.74558 6.86934 7.01476 7.06401 7.19803 7.30304 7.31617 7.55403 7.57643 7.81342 7.99565 8.12780 8.56243 9.16376 9.71775 11.21391 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.003968 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.080536 B = 7055.554037 C = 7688.829144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.066 0.934 4 C -0.115 4.115 5 C -0.111 4.111 6 C 0.083 3.917 7 H 0.039 0.961 8 C 0.067 3.933 9 N -0.839 5.839 10 N -0.518 5.518 11 C 0.068 3.932 12 C -0.126 4.126 13 C -0.103 4.103 14 C 0.021 3.979 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.077 3.923 24 H 0.093 0.907 25 C -0.187 4.187 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.337 0.663 36 H 0.337 0.663 37 H 0.024 0.976 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.012 0.988 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -3.335 -22.747 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.026 4.026 7 H 0.056 0.944 8 C -0.064 4.064 9 N -0.369 5.369 10 N -0.242 5.242 11 C -0.059 4.059 12 C -0.164 4.164 13 C -0.142 4.142 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.032 4.032 24 H 0.111 0.889 25 C -0.245 4.245 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.042 0.958 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.806 -2.666 -22.249 22.423 hybrid contribution 1.655 -0.978 0.346 1.953 sum 2.461 -3.644 -21.903 22.340 Atomic orbital electron populations 1.21747 0.94608 1.02763 1.00490 1.21177 0.96633 0.98261 0.94200 0.91524 1.21616 1.00259 0.95583 0.97787 1.21600 1.01969 0.95499 0.95901 1.21635 0.96763 0.92618 0.91582 0.94363 1.21846 1.00789 0.93326 0.90464 1.59322 1.14241 1.20983 1.42321 1.62259 1.58653 1.00912 1.02372 1.22527 0.99234 0.97742 0.86394 1.21930 1.01144 0.98325 0.95021 1.21516 0.99665 0.98911 0.94068 1.19096 0.96750 0.94415 0.91352 1.21319 1.45253 0.97651 0.91259 0.92814 1.25029 0.95504 0.94900 0.99128 1.69976 1.47791 1.10352 1.25592 0.86634 0.77962 0.80127 0.83511 1.20785 1.21294 1.19902 1.21819 0.92322 0.90485 0.98533 0.88896 1.22499 0.98235 1.01853 1.01947 0.91139 0.92923 0.93976 0.92355 0.92246 0.92412 0.90782 0.90181 0.95706 0.85025 0.85054 0.95758 0.87430 0.93274 0.92321 0.93490 0.94005 0.97008 0.96775 0.93164 0.92726 0.92626 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.75 37.16 0.33 -1.20 16 2 C -0.08 -0.91 2.73 -90.54 -0.25 -1.16 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -1.08 5.20 -26.60 -0.14 -1.22 16 5 C -0.11 -1.04 5.02 -26.66 -0.13 -1.17 16 6 C 0.08 0.89 1.86 -67.73 -0.13 0.77 16 7 H 0.04 0.44 6.09 -51.93 -0.32 0.12 16 8 C 0.07 0.65 6.14 -3.82 -0.02 0.63 16 9 N -0.84 -8.31 5.80 -10.37 -0.06 -8.37 16 10 N -0.52 -6.69 3.89 -218.77 -0.85 -7.54 16 11 C 0.07 1.02 3.05 -3.82 -0.01 1.01 16 12 C -0.13 -2.30 4.04 -26.73 -0.11 -2.41 16 13 C -0.10 -2.25 5.15 -26.73 -0.14 -2.39 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 16 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 19 Si 0.89 22.27 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.08 0.98 1.84 -67.73 -0.12 0.86 16 24 H 0.09 1.38 5.94 -51.93 -0.31 1.08 16 25 C -0.19 -2.30 7.91 37.16 0.29 -2.00 16 26 H 0.07 0.83 6.01 -51.93 -0.31 0.52 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.06 0.55 6.67 -51.93 -0.35 0.21 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.34 2.82 9.08 -39.29 -0.36 2.46 16 36 H 0.34 3.16 8.59 -39.29 -0.34 2.82 16 37 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 38 H 0.11 1.70 6.10 -51.93 -0.32 1.39 16 39 H 0.05 0.90 5.82 -51.93 -0.30 0.60 16 40 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.05 0.62 4.80 -51.93 -0.25 0.37 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.85 6.49 -51.93 -0.34 0.51 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -30.58 345.77 -9.87 -40.45 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.91 Total: 1.98 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -0.98 Total: -21.87 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.17 Total: -43.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.58 -9.87 -40.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692628817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.698 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds