Wall clock time and date at job start Mon Mar 30 2020 08:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.50377 * 2 1 4 4 C 1.53126 * 109.49891 * 239.92334 * 2 1 3 5 5 C 1.53119 * 109.16079 * 297.71631 * 4 2 1 6 6 C 1.53028 * 109.27963 * 302.34434 * 5 4 2 7 7 H 1.08999 * 109.45629 * 299.17207 * 6 5 4 8 8 C 1.53000 * 109.46427 * 179.19939 * 6 5 4 9 9 N 1.46900 * 109.47100 * 175.83491 * 8 6 5 10 10 N 1.46847 * 109.52309 * 59.18091 * 6 5 4 11 11 C 1.46900 * 111.00246 * 174.16185 * 10 6 5 12 12 C 1.52999 * 109.47561 * 167.19385 * 11 10 6 13 13 C 1.52996 * 109.47223 * 174.39346 * 12 11 10 14 14 C 1.53006 * 109.46760 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47029 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99649 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00335 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47387 * 89.99645 * 19 17 15 21 21 H 1.48505 * 109.46926 * 210.00026 * 19 17 15 22 22 H 1.48507 * 109.47172 * 329.99181 * 19 17 15 23 23 C 1.46846 * 111.19788 * 298.25790 * 10 6 5 24 24 H 1.09003 * 109.45940 * 181.75666 * 23 10 6 25 25 C 1.52999 * 109.46547 * 301.72192 * 23 10 6 26 26 H 1.08995 * 109.47299 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47136 * 300.07611 * 1 2 3 28 28 H 1.09011 * 109.46976 * 60.07000 * 1 2 3 29 29 H 1.09000 * 109.52163 * 177.80954 * 4 2 1 30 30 H 1.09008 * 109.51980 * 57.62276 * 4 2 1 31 31 H 1.09006 * 109.49703 * 182.40356 * 5 4 2 32 32 H 1.08997 * 109.53726 * 62.31099 * 5 4 2 33 33 H 1.09004 * 109.46534 * 295.83000 * 8 6 5 34 34 H 1.08990 * 109.47043 * 55.83111 * 8 6 5 35 35 H 1.00900 * 110.99730 * 179.97438 * 9 8 6 36 36 H 1.00899 * 111.00258 * 303.95396 * 9 8 6 37 37 H 1.08997 * 109.47067 * 47.19229 * 11 10 6 38 38 H 1.08999 * 109.46909 * 287.19289 * 11 10 6 39 39 H 1.09003 * 109.47177 * 294.39877 * 12 11 10 40 40 H 1.09006 * 109.46732 * 54.39037 * 12 11 10 41 41 H 1.08996 * 109.47080 * 299.99801 * 13 12 11 42 42 H 1.08997 * 109.47358 * 60.00116 * 13 12 11 43 43 H 1.08996 * 109.47114 * 299.99722 * 14 13 12 44 44 H 1.08997 * 109.47138 * 59.99923 * 14 13 12 45 45 H 0.96998 * 119.99831 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.46405 * 55.33598 * 25 23 10 47 47 H 1.08998 * 109.47313 * 175.33199 * 25 23 10 48 48 H 1.09003 * 109.47229 * 295.34023 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7234 -1.2491 5 6 1.5748 -2.1813 -1.2117 6 6 2.0844 -2.8421 0.0711 7 1 3.1741 -2.8196 0.0829 8 6 1.6039 -4.2938 0.1225 9 7 2.1746 -4.9570 1.3024 10 7 1.5675 -2.1140 1.2369 11 6 1.9222 -2.8006 2.4862 12 6 1.6561 -1.8715 3.6723 13 6 1.8920 -2.6318 4.9788 14 6 1.6252 -1.7027 6.1648 15 6 1.8570 -2.4518 7.4518 16 1 2.1643 -3.4869 7.4262 17 6 1.6768 -1.8159 8.6617 18 7 1.3031 -0.5553 8.6927 19 14 1.9648 -2.7442 10.2569 20 1 3.3830 -2.5911 10.6696 21 1 1.0792 -2.1960 11.3154 22 1 1.6609 -4.1836 10.0538 23 6 2.0409 -0.7240 1.2476 24 1 1.6670 -0.2199 2.1388 25 6 3.5708 -0.7066 1.2566 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3633 0.5128 -0.8907 29 1 3.1304 -0.6898 -1.2694 30 1 1.6441 -0.2366 -2.1400 31 1 1.9714 -2.7125 -2.0770 32 1 0.4856 -2.2162 -1.2311 33 1 0.5158 -4.3143 0.1849 34 1 1.9261 -4.8152 -0.7788 35 1 1.8716 -5.9178 1.3591 36 1 3.1817 -4.8947 1.3006 37 1 2.9782 -3.0700 2.4655 38 1 1.3190 -3.7027 2.5889 39 1 2.3304 -1.0165 3.6225 40 1 0.6239 -1.5227 3.6361 41 1 1.2177 -3.4867 5.0285 42 1 2.9241 -2.9806 5.0149 43 1 2.2993 -0.8476 6.1153 44 1 0.5931 -1.3544 6.1284 45 1 1.1766 -0.1077 9.5440 46 1 3.9456 -1.2821 0.4101 47 1 3.9229 0.3222 1.1809 48 1 3.9338 -1.1476 2.1850 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692628817.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:37:22 Heat of formation + Delta-G solvation = -33.779829 kcal Electronic energy + Delta-G solvation = -22071.599139 eV Core-core repulsion = 19159.670934 eV Total energy + Delta-G solvation = -2911.928205 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26536 -36.93234 -36.23893 -35.06524 -33.44046 -32.31530 -30.53709 -29.48516 -27.48959 -26.02582 -24.63801 -24.30788 -22.69263 -21.66331 -21.22872 -19.00816 -18.36705 -17.20138 -16.70820 -16.47132 -16.45220 -16.17879 -15.47718 -15.24873 -14.81760 -14.45823 -14.41190 -14.07078 -13.92082 -13.71620 -13.43868 -13.32331 -13.00453 -12.89079 -12.77681 -12.60809 -12.44617 -12.27481 -12.20938 -11.95661 -11.89418 -11.74098 -11.35243 -11.33244 -11.20522 -11.02258 -10.96399 -10.73805 -10.54258 -9.21600 -8.87156 -8.18405 -6.30079 1.39478 1.41773 1.53084 2.41995 3.10066 3.13936 3.65082 3.79689 3.91273 4.08394 4.21742 4.27789 4.30374 4.39049 4.46450 4.48959 4.54821 4.61600 4.65548 4.71710 4.83525 4.88357 4.90624 4.93045 4.97452 5.05457 5.08244 5.11432 5.18758 5.21812 5.23528 5.29554 5.34871 5.39422 5.42656 5.53401 5.59748 5.70903 5.75018 5.83089 5.88876 6.27340 6.29708 6.43526 6.52580 6.64115 6.87250 7.39111 8.93652 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026382 B = 0.003968 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.080536 B = 7055.554037 C = 7688.829144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.108 4.108 6 C 0.082 3.918 7 H 0.037 0.963 8 C 0.071 3.929 9 N -0.853 5.853 10 N -0.522 5.522 11 C 0.087 3.913 12 C -0.114 4.114 13 C -0.089 4.089 14 C 0.025 3.975 15 C -0.543 4.543 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.075 3.925 24 H 0.063 0.937 25 C -0.180 4.180 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.346 0.654 36 H 0.340 0.660 37 H 0.025 0.975 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.045 0.955 43 H -0.015 1.015 44 H -0.014 1.014 45 H 0.263 0.737 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -4.676 -24.104 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.146 4.146 6 C -0.027 4.027 7 H 0.055 0.945 8 C -0.060 4.060 9 N -0.384 5.384 10 N -0.246 5.246 11 C -0.041 4.041 12 C -0.152 4.152 13 C -0.127 4.127 14 C -0.012 4.012 15 C -0.581 4.581 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.576 5.576 19 Si 0.791 3.209 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.186 1.186 23 C -0.034 4.034 24 H 0.081 0.919 25 C -0.239 4.239 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.160 0.840 36 H 0.153 0.847 37 H 0.043 0.957 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.003 0.997 44 H 0.004 0.996 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.446 -4.018 -23.629 24.012 hybrid contribution 1.436 -0.508 0.761 1.703 sum 2.882 -4.526 -22.868 23.489 Atomic orbital electron populations 1.21700 0.94766 1.02212 1.00520 1.21168 0.96458 0.98463 0.94019 0.91115 1.21599 1.00447 0.95513 0.97271 1.21595 1.01817 0.95497 0.95658 1.21756 0.96649 0.93169 0.91088 0.94514 1.21798 1.00141 0.92789 0.91280 1.59238 1.14593 1.21820 1.42731 1.62234 1.59051 1.01054 1.02273 1.22258 0.99080 0.96567 0.86172 1.21777 1.00069 0.98400 0.94945 1.21313 0.99755 0.97975 0.93658 1.19012 0.94246 0.94466 0.93477 1.21742 1.45731 0.98179 0.92461 0.92218 1.26033 0.94807 0.95835 1.03347 1.70119 1.48426 1.12165 1.26897 0.85420 0.78267 0.79007 0.78194 1.19673 1.20626 1.18616 1.21783 0.92675 0.90431 0.98510 0.91886 1.22429 0.97747 1.02326 1.01350 0.91933 0.94576 0.92253 0.92016 0.90665 0.90297 0.91100 0.91150 0.93618 0.84020 0.84680 0.95688 0.87747 0.93910 0.93730 0.93300 0.93630 0.99693 0.99587 0.92814 0.91351 0.91980 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.75 71.98 0.63 -2.22 16 2 C -0.08 -1.69 2.73 -10.74 -0.03 -1.72 16 3 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.11 -1.79 5.20 30.68 0.16 -1.63 16 5 C -0.11 -1.71 5.02 30.64 0.15 -1.56 16 6 C 0.08 1.60 1.86 44.94 0.08 1.68 16 7 H 0.04 0.75 6.09 -2.39 -0.01 0.74 16 8 C 0.07 1.23 6.14 86.30 0.53 1.76 16 9 N -0.85 -15.60 5.80 -186.72 -1.08 -16.68 16 10 N -0.52 -13.22 3.89 -846.05 -3.29 -16.51 16 11 C 0.09 2.59 3.05 86.30 0.26 2.86 16 12 C -0.11 -4.30 4.04 30.59 0.12 -4.17 16 13 C -0.09 -3.97 5.15 30.60 0.16 -3.81 16 14 C 0.03 1.42 4.97 29.85 0.15 1.57 16 15 C -0.54 -32.59 9.11 25.60 0.23 -32.36 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 17 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 18 N -0.94 -59.28 13.29 21.45 0.28 -59.00 16 19 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.07 1.91 1.84 44.94 0.08 1.99 16 24 H 0.06 1.97 5.94 -2.39 -0.01 1.96 16 25 C -0.18 -4.33 7.91 71.98 0.57 -3.76 16 26 H 0.06 1.42 6.01 -2.39 -0.01 1.41 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 0.98 6.67 -2.39 -0.02 0.96 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.07 1.21 6.58 -2.39 -0.02 1.19 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.35 5.24 9.08 -89.69 -0.81 4.43 16 36 H 0.34 5.83 8.59 -89.70 -0.77 5.06 16 37 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 38 H 0.10 3.25 6.10 -2.39 -0.01 3.24 16 39 H 0.04 1.65 5.82 -2.39 -0.01 1.64 16 40 H 0.04 1.78 8.13 -2.38 -0.02 1.77 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 43 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.07 1.44 4.80 -2.39 -0.01 1.43 16 47 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.04 1.11 6.49 -2.39 -0.02 1.10 16 Total: -1.00 -66.67 345.77 0.85 -65.82 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.66 Total: 19.71 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 3.57 Total: -41.09 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.09 Total: -92.19 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -66.67 0.85 -65.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692628817.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.040 kcal (2) G-P(sol) polarization free energy of solvation -66.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds