Wall clock time and date at job start Mon Mar 30 2020 08:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50216 * 2 1 4 4 C 1.53126 * 109.50206 * 239.92724 * 2 1 3 5 5 C 1.53117 * 109.15710 * 297.70838 * 4 2 1 6 6 C 1.53034 * 109.28583 * 302.35048 * 5 4 2 7 7 H 1.09009 * 109.45094 * 299.17069 * 6 5 4 8 8 C 1.52993 * 109.46876 * 179.19375 * 6 5 4 9 9 N 1.46894 * 109.47321 * 293.73814 * 8 6 5 10 10 N 1.46854 * 109.52309 * 59.17447 * 6 5 4 11 11 C 1.46898 * 110.99675 * 174.16387 * 10 6 5 12 12 C 1.52999 * 109.47072 * 66.34048 * 11 10 6 13 13 C 1.53004 * 109.46828 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46828 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47195 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99518 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00286 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99737 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46950 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46941 * 240.00431 * 19 17 15 22 22 H 1.48491 * 109.47058 * 120.00080 * 19 17 15 23 23 C 1.46844 * 111.19653 * 298.26379 * 10 6 5 24 24 H 1.08998 * 109.46321 * 301.72175 * 23 10 6 25 25 C 1.53006 * 109.45826 * 181.75631 * 23 10 6 26 26 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47021 * 300.07507 * 1 2 3 28 28 H 1.09002 * 109.46978 * 60.07185 * 1 2 3 29 29 H 1.09001 * 109.51861 * 177.80877 * 4 2 1 30 30 H 1.08988 * 109.52481 * 57.61754 * 4 2 1 31 31 H 1.09001 * 109.50612 * 182.40106 * 5 4 2 32 32 H 1.09001 * 109.53518 * 62.31081 * 5 4 2 33 33 H 1.09007 * 109.46991 * 53.73537 * 8 6 5 34 34 H 1.09000 * 109.47549 * 173.73108 * 8 6 5 35 35 H 1.00899 * 111.00097 * 61.51047 * 9 8 6 36 36 H 1.00899 * 111.00613 * 185.46955 * 9 8 6 37 37 H 1.08996 * 109.47584 * 306.33890 * 11 10 6 38 38 H 1.09002 * 109.46530 * 186.33690 * 11 10 6 39 39 H 1.09002 * 109.47176 * 59.99911 * 12 11 10 40 40 H 1.09002 * 109.47151 * 299.99262 * 12 11 10 41 41 H 1.08996 * 109.47314 * 60.00157 * 13 12 11 42 42 H 1.08998 * 109.47539 * 299.99828 * 13 12 11 43 43 H 1.08997 * 109.47577 * 60.00541 * 14 13 12 44 44 H 1.09002 * 109.47151 * 299.99742 * 14 13 12 45 45 H 0.96995 * 120.00003 * 359.97438 * 18 17 15 46 46 H 1.08997 * 109.47082 * 59.99904 * 25 23 10 47 47 H 1.09005 * 109.46932 * 179.97438 * 25 23 10 48 48 H 1.08999 * 109.47313 * 300.00039 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2491 5 6 1.5750 -2.1813 -1.2116 6 6 2.0846 -2.8420 0.0712 7 1 3.1744 -2.8195 0.0830 8 6 1.6041 -4.2937 0.1227 9 7 0.1416 -4.3209 0.2572 10 7 1.5676 -2.1139 1.2371 11 6 1.9223 -2.8006 2.4863 12 6 3.4393 -2.7552 2.6801 13 6 3.8087 -3.4699 3.9816 14 6 5.3258 -3.4251 4.1751 15 6 5.6898 -4.1295 5.4566 16 1 4.9164 -4.5659 6.0713 17 6 7.0101 -4.2178 5.8438 18 7 7.9519 -3.6868 5.0949 19 14 7.4613 -5.0916 7.4320 20 1 6.2279 -5.5983 8.0858 21 1 8.1495 -4.1409 8.3417 22 1 8.3650 -6.2307 7.1307 23 6 2.0410 -0.7239 1.2477 24 1 3.1309 -0.7115 1.2541 25 6 1.5160 -0.0162 2.4985 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3633 0.5127 -0.8906 29 1 3.1305 -0.6896 -1.2693 30 1 1.6442 -0.2367 -2.1399 31 1 1.9715 -2.7125 -2.0769 32 1 0.4857 -2.2163 -1.2310 33 1 1.8941 -4.8051 -0.7952 34 1 2.0571 -4.7963 0.9772 35 1 -0.3027 -3.8826 -0.5356 36 1 -0.1925 -5.2647 0.3828 37 1 1.5933 -3.8385 2.4365 38 1 1.4339 -2.3043 3.3249 39 1 3.7684 -1.7172 2.7299 40 1 3.9278 -3.2515 1.8415 41 1 3.4796 -4.5078 3.9322 42 1 3.3203 -2.9734 4.8200 43 1 5.6553 -2.3873 4.2244 44 1 5.8138 -3.9219 3.3366 45 1 7.7176 -3.2334 4.2701 46 1 1.8806 -0.5312 3.3873 47 1 1.8677 1.0155 2.5069 48 1 0.4261 -0.0289 2.4928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692628819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:37:29 Heat of formation + Delta-G solvation = -28.514036 kcal Electronic energy + Delta-G solvation = -22154.517947 eV Core-core repulsion = 19242.818084 eV Total energy + Delta-G solvation = -2911.699863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22407 -35.76750 -35.27054 -33.76115 -31.87534 -31.56943 -28.45295 -27.62109 -26.70851 -24.85037 -24.36750 -22.66654 -20.88041 -20.48106 -20.28596 -18.00526 -16.60641 -16.30599 -15.92008 -15.85927 -15.10702 -14.67614 -13.94566 -13.80463 -13.73180 -13.42981 -13.28103 -12.85291 -12.72729 -12.38000 -12.25895 -12.12635 -12.01464 -11.70927 -11.44601 -11.36287 -11.24051 -10.97520 -10.73965 -10.67084 -10.49790 -10.29874 -10.10249 -10.07396 -9.91982 -9.70765 -9.67514 -8.59925 -8.51375 -8.27709 -7.79997 -6.31839 -4.00102 3.45654 3.50005 3.63494 4.00496 4.57719 4.60100 4.64337 4.71842 4.82638 4.97942 5.19167 5.28850 5.32859 5.44764 5.46447 5.50960 5.52805 5.59006 5.61507 5.67077 5.72870 5.78744 5.81622 5.85710 5.90882 5.97275 6.08467 6.09068 6.13667 6.20169 6.27670 6.36664 6.41451 6.52892 6.58314 6.71228 6.87272 7.05497 7.08297 7.39797 7.44171 7.46198 7.48902 7.61866 8.29093 8.52682 8.94096 9.72544 11.08769 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.003979 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.413381 B = 7035.246990 C = 7384.839862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.065 0.935 4 C -0.116 4.116 5 C -0.113 4.113 6 C 0.085 3.915 7 H 0.043 0.957 8 C 0.066 3.934 9 N -0.829 5.829 10 N -0.501 5.501 11 C 0.055 3.945 12 C -0.157 4.157 13 C -0.097 4.097 14 C 0.008 3.992 15 C -0.600 4.600 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.917 5.917 19 Si 1.073 2.927 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.081 3.919 24 H 0.040 0.960 25 C -0.149 4.149 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.336 0.664 36 H 0.334 0.666 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.268 0.732 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.481 4.642 -13.871 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.024 4.024 7 H 0.061 0.939 8 C -0.065 4.065 9 N -0.359 5.359 10 N -0.225 5.225 11 C -0.072 4.072 12 C -0.196 4.196 13 C -0.136 4.136 14 C -0.029 4.029 15 C -0.638 4.638 16 H 0.067 0.933 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.902 3.098 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.214 1.214 23 C -0.027 4.027 24 H 0.058 0.942 25 C -0.206 4.206 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.613 4.672 -12.296 20.415 hybrid contribution -0.145 -0.143 -1.816 1.827 sum -15.758 4.530 -14.112 21.633 Atomic orbital electron populations 1.21799 0.94578 1.03017 1.00217 1.21154 0.96862 0.98174 0.93968 0.91611 1.21603 1.00305 0.95729 0.97738 1.21652 1.01789 0.95486 0.96167 1.21615 0.96652 0.92894 0.91256 0.93887 1.21853 0.89281 0.95584 0.99795 1.58517 1.04950 1.23464 1.48937 1.62099 1.58455 1.00393 1.01513 1.22302 0.93771 0.99780 0.91379 1.22325 0.96914 1.00817 0.99498 1.21389 0.99185 0.98516 0.94477 1.19224 0.90820 0.96044 0.96801 1.22158 0.94915 1.39016 1.07720 0.93323 1.25862 0.92886 0.96826 1.03520 1.70720 1.35279 1.34865 1.14486 0.83488 0.75207 0.76198 0.74884 1.21520 1.21358 1.21391 1.21605 0.96993 0.89171 0.94958 0.94179 1.21951 1.01943 0.99442 0.97289 0.90713 0.92923 0.94208 0.92462 0.92124 0.92457 0.90710 0.95756 0.90575 0.85134 0.85444 0.90216 0.90926 0.92610 0.93063 0.93497 0.93387 0.97835 0.97909 0.92154 0.92040 0.92836 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.37 37.16 0.31 -1.06 16 2 C -0.08 -0.88 2.75 -90.54 -0.25 -1.13 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -1.16 5.51 -26.61 -0.15 -1.31 16 5 C -0.11 -1.12 4.82 -26.65 -0.13 -1.25 16 6 C 0.08 1.01 1.80 -67.72 -0.12 0.89 16 7 H 0.04 0.60 6.76 -51.92 -0.35 0.25 16 8 C 0.07 0.73 5.69 -3.83 -0.02 0.71 16 9 N -0.83 -8.11 9.20 -10.37 -0.10 -8.20 16 10 N -0.50 -6.35 3.51 -218.76 -0.77 -7.12 16 11 C 0.06 0.81 4.43 -3.83 -0.02 0.80 16 12 C -0.16 -2.74 4.40 -26.73 -0.12 -2.86 16 13 C -0.10 -2.09 5.15 -26.73 -0.14 -2.22 16 14 C 0.01 0.22 4.28 -27.88 -0.12 0.10 16 15 C -0.60 -17.76 9.11 -34.44 -0.31 -18.07 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 18 N -0.92 -28.98 13.65 55.43 0.76 -28.22 16 19 Si 1.07 26.11 29.90 -169.99 -5.08 21.03 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 23 C 0.08 1.02 1.53 -67.72 -0.10 0.91 16 24 H 0.04 0.58 6.60 -51.93 -0.34 0.24 16 25 C -0.15 -1.82 8.30 37.16 0.31 -1.51 16 26 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 27 H 0.05 0.53 6.43 -51.93 -0.33 0.19 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.14 -51.94 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.71 5.25 -51.93 -0.27 0.44 16 33 H 0.02 0.25 8.14 -51.92 -0.42 -0.18 16 34 H 0.08 0.98 6.57 -51.93 -0.34 0.64 16 35 H 0.34 2.90 7.48 -39.29 -0.29 2.60 16 36 H 0.33 2.81 9.08 -39.29 -0.36 2.45 16 37 H 0.08 1.20 5.93 -51.93 -0.31 0.89 16 38 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 39 H 0.06 1.01 6.20 -51.93 -0.32 0.69 16 40 H 0.05 0.92 6.69 -51.93 -0.35 0.57 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 44 H 0.00 0.07 8.01 -51.93 -0.42 -0.34 16 45 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 46 H 0.06 0.84 6.05 -51.93 -0.31 0.52 16 47 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.77 6.42 -51.93 -0.33 0.43 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -31.04 345.28 -9.63 -40.67 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.69 Total: 2.37 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -0.95 Total: -25.73 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.11 Total: -43.54 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.08 Total: 21.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.04 -9.63 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692628819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.157 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds