Wall clock time and date at job start Mon Mar 30 2020 08:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.50216 * 2 1 4 4 C 1.53126 * 109.50206 * 239.92724 * 2 1 3 5 5 C 1.53117 * 109.15710 * 297.70838 * 4 2 1 6 6 C 1.53034 * 109.28583 * 302.35048 * 5 4 2 7 7 H 1.09009 * 109.45094 * 299.17069 * 6 5 4 8 8 C 1.52993 * 109.46876 * 179.19375 * 6 5 4 9 9 N 1.46894 * 109.47321 * 293.73814 * 8 6 5 10 10 N 1.46854 * 109.52309 * 59.17447 * 6 5 4 11 11 C 1.46898 * 110.99675 * 174.16387 * 10 6 5 12 12 C 1.52999 * 109.47072 * 66.34048 * 11 10 6 13 13 C 1.53004 * 109.46828 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46828 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.47195 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99518 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00286 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99737 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00175 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46950 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46941 * 240.00431 * 19 17 15 22 22 H 1.48491 * 109.47058 * 120.00080 * 19 17 15 23 23 C 1.46844 * 111.19653 * 298.26379 * 10 6 5 24 24 H 1.08998 * 109.46321 * 301.72175 * 23 10 6 25 25 C 1.53006 * 109.45826 * 181.75631 * 23 10 6 26 26 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47021 * 300.07507 * 1 2 3 28 28 H 1.09002 * 109.46978 * 60.07185 * 1 2 3 29 29 H 1.09001 * 109.51861 * 177.80877 * 4 2 1 30 30 H 1.08988 * 109.52481 * 57.61754 * 4 2 1 31 31 H 1.09001 * 109.50612 * 182.40106 * 5 4 2 32 32 H 1.09001 * 109.53518 * 62.31081 * 5 4 2 33 33 H 1.09007 * 109.46991 * 53.73537 * 8 6 5 34 34 H 1.09000 * 109.47549 * 173.73108 * 8 6 5 35 35 H 1.00899 * 111.00097 * 61.51047 * 9 8 6 36 36 H 1.00899 * 111.00613 * 185.46955 * 9 8 6 37 37 H 1.08996 * 109.47584 * 306.33890 * 11 10 6 38 38 H 1.09002 * 109.46530 * 186.33690 * 11 10 6 39 39 H 1.09002 * 109.47176 * 59.99911 * 12 11 10 40 40 H 1.09002 * 109.47151 * 299.99262 * 12 11 10 41 41 H 1.08996 * 109.47314 * 60.00157 * 13 12 11 42 42 H 1.08998 * 109.47539 * 299.99828 * 13 12 11 43 43 H 1.08997 * 109.47577 * 60.00541 * 14 13 12 44 44 H 1.09002 * 109.47151 * 299.99742 * 14 13 12 45 45 H 0.96995 * 120.00003 * 359.97438 * 18 17 15 46 46 H 1.08997 * 109.47082 * 59.99904 * 25 23 10 47 47 H 1.09005 * 109.46932 * 179.97438 * 25 23 10 48 48 H 1.08999 * 109.47313 * 300.00039 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2491 5 6 1.5750 -2.1813 -1.2116 6 6 2.0846 -2.8420 0.0712 7 1 3.1744 -2.8195 0.0830 8 6 1.6041 -4.2937 0.1227 9 7 0.1416 -4.3209 0.2572 10 7 1.5676 -2.1139 1.2371 11 6 1.9223 -2.8006 2.4863 12 6 3.4393 -2.7552 2.6801 13 6 3.8087 -3.4699 3.9816 14 6 5.3258 -3.4251 4.1751 15 6 5.6898 -4.1295 5.4566 16 1 4.9164 -4.5659 6.0713 17 6 7.0101 -4.2178 5.8438 18 7 7.9519 -3.6868 5.0949 19 14 7.4613 -5.0916 7.4320 20 1 6.2279 -5.5983 8.0858 21 1 8.1495 -4.1409 8.3417 22 1 8.3650 -6.2307 7.1307 23 6 2.0410 -0.7239 1.2477 24 1 3.1309 -0.7115 1.2541 25 6 1.5160 -0.0162 2.4985 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5150 0.8893 28 1 -0.3633 0.5127 -0.8906 29 1 3.1305 -0.6896 -1.2693 30 1 1.6442 -0.2367 -2.1399 31 1 1.9715 -2.7125 -2.0769 32 1 0.4857 -2.2163 -1.2310 33 1 1.8941 -4.8051 -0.7952 34 1 2.0571 -4.7963 0.9772 35 1 -0.3027 -3.8826 -0.5356 36 1 -0.1925 -5.2647 0.3828 37 1 1.5933 -3.8385 2.4365 38 1 1.4339 -2.3043 3.3249 39 1 3.7684 -1.7172 2.7299 40 1 3.9278 -3.2515 1.8415 41 1 3.4796 -4.5078 3.9322 42 1 3.3203 -2.9734 4.8200 43 1 5.6553 -2.3873 4.2244 44 1 5.8138 -3.9219 3.3366 45 1 7.7176 -3.2334 4.2701 46 1 1.8806 -0.5312 3.3873 47 1 1.8677 1.0155 2.5069 48 1 0.4261 -0.0289 2.4928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692628819.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:37:28 Heat of formation + Delta-G solvation = -48.227038 kcal Electronic energy + Delta-G solvation = -22155.372766 eV Core-core repulsion = 19242.818084 eV Total energy + Delta-G solvation = -2912.554683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.23228 -37.19277 -36.29449 -35.50201 -33.50447 -32.58015 -29.87881 -28.80432 -27.69652 -26.31927 -25.50382 -24.33705 -22.40713 -21.82946 -21.29338 -19.13805 -18.75127 -17.32269 -16.92057 -16.82819 -16.26673 -15.74657 -15.69203 -15.20586 -15.13636 -14.76588 -14.52695 -14.12946 -13.81724 -13.68037 -13.60994 -13.29646 -13.03933 -12.87659 -12.80109 -12.64230 -12.37222 -12.31582 -12.27705 -12.03678 -11.95723 -11.76904 -11.71365 -11.38590 -11.20942 -11.03833 -10.87291 -10.68762 -10.58892 -9.38484 -8.98702 -8.72927 -6.44217 1.49306 1.59617 1.76483 2.53626 2.96362 3.11634 3.71211 3.77737 3.85270 3.93652 3.97531 4.09151 4.11299 4.28213 4.36125 4.39426 4.44987 4.56175 4.61447 4.61922 4.64333 4.71555 4.79691 4.84203 4.87816 4.90986 4.94411 5.04751 5.07150 5.09447 5.12997 5.16267 5.20885 5.27909 5.34717 5.37873 5.43044 5.50417 5.54608 5.72183 5.96671 6.14254 6.23533 6.30169 6.46278 6.52970 6.76628 7.38991 8.66513 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.003979 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.413381 B = 7035.246990 C = 7384.839862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.106 4.106 6 C 0.081 3.919 7 H 0.018 0.982 8 C 0.071 3.929 9 N -0.832 5.832 10 N -0.489 5.489 11 C 0.067 3.933 12 C -0.140 4.140 13 C -0.085 4.085 14 C 0.010 3.990 15 C -0.620 4.620 16 H 0.051 0.949 17 C -0.042 4.042 18 N -0.939 5.939 19 Si 1.125 2.875 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.276 1.276 23 C 0.078 3.922 24 H 0.014 0.986 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.345 0.655 36 H 0.343 0.657 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.049 0.951 43 H -0.019 1.019 44 H -0.018 1.018 45 H 0.253 0.747 46 H 0.042 0.958 47 H 0.062 0.938 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 4.481 -14.215 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.144 4.144 6 C -0.028 4.028 7 H 0.036 0.964 8 C -0.060 4.060 9 N -0.364 5.364 10 N -0.212 5.212 11 C -0.061 4.061 12 C -0.179 4.179 13 C -0.124 4.124 14 C -0.028 4.028 15 C -0.657 4.657 16 H 0.069 0.931 17 C -0.238 4.238 18 N -0.576 5.576 19 Si 0.945 3.055 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.031 4.031 24 H 0.032 0.968 25 C -0.202 4.202 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.000 1.000 44 H 0.000 1.000 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.471 4.520 -12.670 22.050 hybrid contribution 0.437 -0.063 -1.752 1.806 sum -17.034 4.457 -14.421 22.760 Atomic orbital electron populations 1.21729 0.93491 1.02717 1.00960 1.21152 0.97625 0.98152 0.93004 0.91097 1.21618 0.99661 0.95905 0.98194 1.21617 1.02318 0.95296 0.95141 1.21708 0.95317 0.93820 0.91983 0.96397 1.21717 0.90145 0.94703 0.99475 1.58459 1.04003 1.24386 1.49510 1.62179 1.57751 1.00436 1.00862 1.22133 0.91117 1.00171 0.92653 1.22151 0.99282 0.99430 0.97009 1.21226 0.95294 0.99260 0.96584 1.19183 0.94319 0.94023 0.95230 1.22584 0.95386 1.39123 1.08649 0.93074 1.27562 0.93138 0.96714 1.06431 1.70867 1.35918 1.36246 1.14589 0.82856 0.76112 0.75582 0.70934 1.19283 1.20220 1.20209 1.21676 0.95570 0.89344 0.96475 0.96780 1.21920 1.02410 0.99679 0.96239 0.91440 0.93027 0.92656 0.93673 0.90190 0.91282 0.89644 0.94556 0.92668 0.84103 0.84406 0.90126 0.90925 0.93522 0.93850 0.93233 0.93227 1.00026 1.00006 0.93773 0.93865 0.91937 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.37 71.98 0.60 -1.67 16 2 C -0.08 -1.58 2.75 -10.74 -0.03 -1.61 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.12 -2.12 5.51 30.68 0.17 -1.95 16 5 C -0.11 -1.90 4.82 30.64 0.15 -1.75 16 6 C 0.08 1.88 1.80 44.93 0.08 1.96 16 7 H 0.02 0.52 6.76 -2.38 -0.02 0.50 16 8 C 0.07 1.51 5.69 86.30 0.49 2.00 16 9 N -0.83 -14.74 9.20 -186.73 -1.72 -16.46 16 10 N -0.49 -12.13 3.51 -846.03 -2.97 -15.10 16 11 C 0.07 1.98 4.43 86.30 0.38 2.36 16 12 C -0.14 -5.04 4.40 30.60 0.13 -4.91 16 13 C -0.09 -3.74 5.15 30.60 0.16 -3.58 16 14 C 0.01 0.53 4.28 29.85 0.13 0.66 16 15 C -0.62 -37.25 9.11 25.60 0.23 -37.01 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 17 C -0.04 -2.52 5.46 84.65 0.46 -2.06 16 18 N -0.94 -60.56 13.65 21.45 0.29 -60.27 16 19 Si 1.12 51.93 29.90 68.60 2.05 53.98 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 C 0.08 1.93 1.53 44.94 0.07 1.99 16 24 H 0.01 0.43 6.60 -2.39 -0.02 0.41 16 25 C -0.15 -3.46 8.30 71.98 0.60 -2.86 16 26 H 0.07 1.28 6.01 -2.39 -0.01 1.26 16 27 H 0.05 0.90 6.43 -2.39 -0.02 0.89 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.38 5.25 -2.39 -0.01 1.37 16 33 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.05 1.41 6.57 -2.39 -0.02 1.39 16 35 H 0.34 5.09 7.48 -89.69 -0.67 4.42 16 36 H 0.34 5.13 9.08 -89.69 -0.81 4.32 16 37 H 0.08 2.39 5.93 -2.39 -0.01 2.38 16 38 H 0.07 2.16 6.34 -2.39 -0.02 2.15 16 39 H 0.05 1.76 6.20 -2.39 -0.01 1.75 16 40 H 0.04 1.62 6.69 -2.39 -0.02 1.61 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H -0.02 -1.10 8.01 -2.39 -0.02 -1.12 16 44 H -0.02 -1.09 8.01 -2.39 -0.02 -1.10 16 45 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 46 H 0.04 1.17 6.05 -2.39 -0.01 1.16 16 47 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.07 1.64 6.42 -2.39 -0.02 1.62 16 Total: -1.00 -67.46 345.28 0.84 -66.62 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.45 Total: 19.66 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 3.63 Total: -48.43 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -4.39 Total: -91.83 kcal Atomic # 14 Polarization: 51.93 SS G_CDS: 2.05 Total: 53.98 kcal Total: -67.46 0.84 -66.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692628819.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.394 kcal (2) G-P(sol) polarization free energy of solvation -67.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds